Wall clock time and date at job start Fri Apr 10 2020 14:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47389 * 2 1 4 4 C 1.50705 * 109.46782 * 240.00020 * 2 1 3 5 5 H 1.08004 * 120.00066 * 239.99453 * 4 2 1 6 6 C 1.37876 * 119.99923 * 60.00308 * 4 2 1 7 7 N 1.31514 * 120.00038 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99634 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47135 * 89.99970 * 8 6 4 10 10 H 1.48505 * 109.46798 * 209.99499 * 8 6 4 11 11 H 1.48497 * 109.47451 * 329.99779 * 8 6 4 12 12 O 1.45202 * 109.47404 * 120.00037 * 2 1 3 13 13 C 1.34227 * 117.00265 * 270.00071 * 12 2 1 14 14 O 1.20830 * 119.99445 * 359.97438 * 13 12 2 15 15 C 1.50696 * 120.00302 * 180.02562 * 13 12 2 16 16 N 1.46494 * 109.47466 * 179.97438 * 15 13 12 17 17 C 1.34009 * 124.22468 * 89.96979 * 16 15 13 18 18 O 1.21541 * 123.81505 * 359.94235 * 17 16 15 19 19 N 1.34980 * 112.36947 * 179.97438 * 17 16 15 20 20 C 1.45939 * 105.99523 * 0.02562 * 19 17 16 21 21 C 1.53571 * 112.01135 * 238.41429 * 20 19 17 22 22 C 1.54499 * 104.08611 * 275.02034 * 21 20 19 23 23 C 1.53977 * 106.66178 * 337.67240 * 22 21 20 24 24 C 1.53571 * 112.01079 * 121.58181 * 20 19 17 25 25 C 1.35208 * 124.22026 * 269.95417 * 16 15 13 26 26 O 1.21235 * 127.46858 * 0.03162 * 25 16 15 27 27 H 1.08994 * 109.47089 * 60.00098 * 1 2 3 28 28 H 1.09001 * 109.47105 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46774 * 299.99903 * 1 2 3 30 30 H 0.96995 * 119.99772 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.47200 * 59.99252 * 15 13 12 32 32 H 1.09000 * 109.46739 * 299.99853 * 15 13 12 33 33 H 0.97002 * 127.00288 * 180.02562 * 19 17 16 34 34 H 1.08999 * 110.50635 * 156.36822 * 21 20 19 35 35 H 1.08999 * 110.50963 * 33.67130 * 21 20 19 36 36 H 1.08999 * 110.02012 * 218.37913 * 22 21 20 37 37 H 1.08993 * 110.02517 * 96.97182 * 22 21 20 38 38 H 1.08997 * 110.01708 * 119.30557 * 23 22 21 39 39 H 1.09001 * 110.01783 * 240.70100 * 23 22 21 40 40 H 1.09000 * 110.51149 * 326.32653 * 24 20 19 41 41 H 1.09003 * 110.50881 * 203.63378 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.3447 -2.1615 -4.4124 10 1 2.4871 -0.1402 -5.1121 11 1 3.6307 -1.7566 -3.7120 12 8 2.0141 -0.6845 1.1855 13 6 2.2172 0.0639 2.2811 14 8 1.9982 1.2518 2.2503 15 6 2.7195 -0.5771 3.5491 16 7 2.8584 0.4438 4.5906 17 6 1.8852 0.7847 5.4464 18 8 0.7790 0.2813 5.4482 19 7 2.2721 1.7510 6.3058 20 6 3.6544 2.0666 5.9602 21 6 4.6071 1.8537 7.1457 22 6 4.5234 3.1775 7.9379 23 6 4.0313 4.2521 6.9511 24 6 3.8318 3.5467 5.5911 25 6 3.9847 1.1593 4.8085 26 8 5.0337 1.0855 4.2051 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 0.7081 1.1609 -3.4843 31 1 3.6885 -1.0401 3.3630 32 1 2.0106 -1.3373 3.8773 33 1 1.7398 2.1536 7.0098 34 1 5.6242 1.6837 6.7925 35 1 4.2710 1.0188 7.7606 36 1 5.5077 3.4458 8.3214 37 1 3.8166 3.0755 8.7614 38 1 3.0862 4.6710 7.2964 39 1 4.7773 5.0413 6.8564 40 1 2.9400 3.9254 5.0917 41 1 4.7100 3.6802 4.9593 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733709472.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:35:05 Heat of formation + Delta-G solvation = -157.385327 kcal Electronic energy + Delta-G solvation = -26465.892248 eV Core-core repulsion = 22538.658872 eV Total energy + Delta-G solvation = -3927.233377 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.88683 -41.37524 -39.96272 -38.99741 -37.79163 -36.88591 -35.40928 -34.86027 -31.93440 -30.20293 -29.93272 -29.20987 -27.50422 -24.83922 -24.40189 -22.62995 -21.72195 -21.46040 -21.30665 -19.28516 -19.15118 -18.67157 -17.84629 -17.72769 -17.15003 -17.01479 -16.97711 -16.75761 -16.27333 -15.98136 -15.61331 -15.38579 -14.91145 -14.59636 -14.48564 -14.02104 -13.66908 -13.59823 -13.19342 -13.07059 -12.92528 -12.83425 -12.74378 -12.45560 -12.23263 -12.19238 -12.16386 -12.08058 -11.97770 -11.67501 -11.36642 -11.32998 -11.11032 -11.03037 -10.63766 -10.52189 -8.32114 -6.49845 0.38132 0.79400 1.10714 1.40845 1.43601 1.53916 1.61227 2.00931 2.10439 2.39561 2.75442 2.98663 3.36341 3.37549 3.67215 3.72329 4.00931 4.04910 4.14120 4.22775 4.37200 4.42697 4.43798 4.45409 4.65141 4.71550 4.75791 4.76923 4.97404 5.01622 5.05651 5.21760 5.27140 5.43297 5.44383 5.54824 5.69452 5.81245 5.82891 5.98375 6.16716 6.52977 6.77336 6.94977 7.21437 8.75913 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.026018 B = 0.003250 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.902097 B = 8613.301030 C = 8872.482448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.219 3.781 3 H 0.006 0.994 4 C -0.550 4.550 5 H 0.071 0.929 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.987 3.013 9 H -0.265 1.265 10 H -0.278 1.278 11 H -0.264 1.264 12 O -0.355 6.355 13 C 0.433 3.567 14 O -0.547 6.547 15 C 0.131 3.869 16 N -0.572 5.572 17 C 0.704 3.296 18 O -0.572 6.572 19 N -0.685 5.685 20 C 0.118 3.882 21 C -0.111 4.111 22 C -0.115 4.115 23 C -0.116 4.116 24 C -0.122 4.122 25 C 0.533 3.467 26 O -0.483 6.483 27 H 0.083 0.917 28 H 0.049 0.951 29 H 0.018 0.982 30 H 0.272 0.728 31 H 0.162 0.838 32 H 0.160 0.840 33 H 0.455 0.545 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.885 3.343 23.784 25.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.166 3.834 3 H 0.023 0.977 4 C -0.588 4.588 5 H 0.090 0.910 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.810 3.190 9 H -0.190 1.190 10 H -0.203 1.203 11 H -0.188 1.188 12 O -0.270 6.270 13 C 0.276 3.724 14 O -0.438 6.438 15 C 0.008 3.992 16 N -0.318 5.318 17 C 0.405 3.595 18 O -0.448 6.448 19 N -0.350 5.350 20 C 0.027 3.973 21 C -0.149 4.149 22 C -0.153 4.153 23 C -0.153 4.153 24 C -0.161 4.161 25 C 0.322 3.678 26 O -0.353 6.353 27 H 0.101 0.899 28 H 0.068 0.932 29 H 0.037 0.963 30 H 0.081 0.919 31 H 0.180 0.820 32 H 0.178 0.822 33 H 0.303 0.697 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.711 3.450 23.206 24.696 hybrid contribution -0.447 0.151 -1.148 1.242 sum 7.265 3.601 22.058 23.501 Atomic orbital electron populations 1.21987 0.96707 1.00585 1.00651 1.20401 0.92022 0.92047 0.78942 0.97660 1.21309 1.33646 1.14081 0.89721 0.91036 1.25891 0.94643 0.95644 1.02289 1.70023 1.36536 1.23681 1.25335 0.85120 0.79081 0.78061 0.76774 1.19043 1.20288 1.18791 1.86454 1.75955 1.43403 1.21214 1.24592 0.74387 0.86202 0.87220 1.90592 1.49780 1.18413 1.85048 1.21222 1.07995 0.89289 0.80657 1.46293 1.15295 1.38734 1.31497 1.16105 0.82955 0.80871 0.79617 1.91001 1.20485 1.59232 1.74043 1.45100 1.13994 1.39454 1.36494 1.21539 0.84437 0.96668 0.94645 1.22554 0.98107 1.01148 0.93105 1.22222 1.03584 0.91679 0.97774 1.22221 1.03010 0.98424 0.91682 1.22548 1.03217 0.89608 1.00706 1.21128 0.82342 0.79865 0.84492 1.90793 1.25885 1.65994 1.52597 0.89881 0.93213 0.96300 0.91915 0.82025 0.82228 0.69720 0.88990 0.88606 0.89302 0.89420 0.90008 0.89750 0.91166 0.89912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.63 9.33 71.98 0.67 -6.96 16 2 C 0.22 12.48 2.56 29.85 0.08 12.56 16 3 H 0.01 0.36 7.16 -2.39 -0.02 0.34 16 4 C -0.55 -31.89 8.90 25.60 0.23 -31.66 16 5 H 0.07 4.02 7.81 -2.91 -0.02 3.99 16 6 C 0.02 0.84 5.30 84.65 0.45 1.29 16 7 N -0.92 -53.74 11.32 21.45 0.24 -53.50 16 8 Si 0.99 43.41 29.54 68.60 2.03 45.43 16 9 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 10 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 11 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 12 O -0.35 -17.61 9.86 -51.39 -0.51 -18.11 16 13 C 0.43 19.15 8.00 71.23 0.57 19.72 16 14 O -0.55 -27.88 15.65 21.95 0.34 -27.53 16 15 C 0.13 4.04 6.31 85.63 0.54 4.58 16 16 N -0.57 -16.92 2.11 -777.49 -1.64 -18.56 16 17 C 0.70 20.17 8.64 179.23 1.55 21.72 16 18 O -0.57 -20.33 17.50 -3.85 -0.07 -20.40 16 19 N -0.69 -12.86 6.03 -441.71 -2.66 -15.53 16 20 C 0.12 2.18 1.04 3.22 0.00 2.18 16 21 C -0.11 -1.22 6.02 31.30 0.19 -1.03 16 22 C -0.12 -0.73 6.82 31.43 0.21 -0.52 16 23 C -0.12 -1.04 6.82 31.43 0.21 -0.83 16 24 C -0.12 -2.09 6.03 31.30 0.19 -1.90 16 25 C 0.53 14.63 7.02 87.46 0.61 15.24 16 26 O -0.48 -15.61 17.79 -2.89 -0.05 -15.67 16 27 H 0.08 4.76 6.07 -2.39 -0.01 4.74 16 28 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 31 H 0.16 4.04 8.02 -2.39 -0.02 4.02 16 32 H 0.16 4.12 7.87 -2.39 -0.02 4.10 16 33 H 0.45 5.68 8.96 -92.71 -0.83 4.85 16 34 H 0.09 1.10 8.07 -2.39 -0.02 1.08 16 35 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.08 1.60 8.07 -2.39 -0.02 1.58 16 Total: -1.00 -78.72 349.38 3.42 -75.30 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.23 Total: 14.17 kcal Atomic # 6 Polarization: 28.88 SS G_CDS: 5.51 Total: 34.39 kcal Atomic # 7 Polarization: -83.53 SS G_CDS: -4.06 Total: -87.59 kcal Atomic # 8 Polarization: -81.42 SS G_CDS: -0.28 Total: -81.71 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -78.72 3.42 -75.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733709472.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.083 kcal (2) G-P(sol) polarization free energy of solvation -78.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds