Wall clock time and date at job start Fri Apr 10 2020 14:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47513 * 2 1 4 4 C 1.50699 * 109.47388 * 239.99993 * 2 1 3 5 5 H 1.08002 * 120.00307 * 275.00017 * 4 2 1 6 6 C 1.37879 * 120.00018 * 94.99999 * 4 2 1 7 7 N 1.31515 * 119.99813 * 184.92183 * 6 4 2 8 8 Si 1.86801 * 119.99979 * 4.91622 * 6 4 2 9 9 H 1.48492 * 109.47169 * 84.83623 * 8 6 4 10 10 H 1.48499 * 109.46943 * 204.83532 * 8 6 4 11 11 H 1.48500 * 109.47080 * 324.83257 * 8 6 4 12 12 O 1.45203 * 109.47026 * 120.00199 * 2 1 3 13 13 C 1.34229 * 116.99889 * 269.99670 * 12 2 1 14 14 O 1.20825 * 120.00303 * 0.02562 * 13 12 2 15 15 C 1.50704 * 119.99813 * 179.97438 * 13 12 2 16 16 N 1.46501 * 109.46834 * 180.02562 * 15 13 12 17 17 C 1.33790 * 124.17757 * 90.02647 * 16 15 13 18 18 O 1.21535 * 123.77193 * 0.21831 * 17 16 15 19 19 N 1.34531 * 112.45508 * 179.97438 * 17 16 15 20 20 C 1.47314 * 106.62069 * 359.97438 * 19 17 16 21 21 C 1.52998 * 110.59358 * 118.52561 * 20 19 17 22 22 C 1.52999 * 110.60014 * 241.31936 * 20 19 17 23 23 C 1.52997 * 117.49716 * 7.29559 * 22 20 19 24 24 C 1.52991 * 117.49923 * 298.63556 * 22 20 19 25 25 C 1.34761 * 124.17588 * 269.96888 * 16 15 13 26 26 O 1.21243 * 127.16109 * 0.08585 * 25 16 15 27 27 H 1.09003 * 109.46809 * 55.02963 * 1 2 3 28 28 H 1.08996 * 109.47215 * 175.03176 * 1 2 3 29 29 H 1.09002 * 109.47077 * 295.03415 * 1 2 3 30 30 H 0.97005 * 119.99403 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.47164 * 60.00090 * 15 13 12 32 32 H 1.09001 * 109.46923 * 299.99960 * 15 13 12 33 33 H 0.97003 * 126.68594 * 180.02562 * 19 17 16 34 34 H 1.08998 * 109.47248 * 60.70583 * 21 20 19 35 35 H 1.09002 * 109.46821 * 180.70147 * 21 20 19 36 36 H 1.08993 * 109.47328 * 300.70156 * 21 20 19 37 37 H 1.08995 * 115.54772 * 152.96225 * 22 20 19 38 38 H 1.09001 * 117.50184 * 359.97438 * 23 22 20 39 39 H 1.09001 * 117.49806 * 145.01822 * 23 22 20 40 40 H 1.09002 * 117.49897 * 214.98211 * 24 22 20 41 41 H 1.09001 * 117.50338 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1356 -1.7855 -1.2290 6 6 2.3603 0.0121 -2.3580 7 7 2.7060 -0.6132 -3.4622 8 14 2.3136 1.8791 -2.3174 9 1 3.5991 2.3949 -1.7822 10 1 2.1058 2.3991 -3.6928 11 1 1.1986 2.3275 -1.4450 12 8 2.0140 -0.6845 1.1856 13 6 2.2172 0.0639 2.2811 14 8 1.9974 1.2517 2.2507 15 6 2.7182 -0.5774 3.5495 16 7 2.8563 0.4434 4.5912 17 6 1.8836 0.7823 5.4450 18 8 0.7798 0.2736 5.4481 19 7 2.2656 1.7454 6.3032 20 6 3.6616 2.0774 5.9698 21 6 3.7792 3.5418 5.5426 22 6 4.5819 1.7891 7.1575 23 6 3.9727 1.0761 8.3664 24 6 4.3271 2.5627 8.4526 25 6 3.9791 1.1563 4.8085 26 8 5.0254 1.0779 4.2010 27 1 -0.3633 0.5890 -0.8422 28 1 -0.3633 -1.0238 -0.0890 29 1 -0.3633 0.4349 0.9311 30 1 2.9363 -0.1048 -4.2556 31 1 3.6871 -1.0411 3.3640 32 1 2.0086 -1.3370 3.8774 33 1 1.7270 2.1430 7.0051 34 1 3.4598 4.1860 6.3618 35 1 4.8156 3.7640 5.2886 36 1 3.1460 3.7187 4.6733 37 1 5.6165 1.5571 6.9051 38 1 2.9162 0.8127 8.3157 39 1 4.6068 0.3752 8.9095 40 1 5.1941 2.8394 9.0525 41 1 3.5041 3.2773 8.4585 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733709814.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:35:22 Heat of formation + Delta-G solvation = -118.963096 kcal Electronic energy + Delta-G solvation = -26605.025569 eV Core-core repulsion = 22679.458306 eV Total energy + Delta-G solvation = -3925.567264 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.87018 -41.42217 -39.90463 -39.00914 -37.82835 -36.93688 -35.42332 -35.21791 -32.75406 -31.66552 -30.20327 -27.52008 -26.36670 -24.46293 -24.17170 -23.14815 -22.32990 -21.38612 -21.32663 -19.64985 -19.21012 -18.79212 -18.09794 -17.72452 -17.41839 -17.05967 -16.85750 -16.68802 -16.24484 -15.88378 -15.50921 -15.26252 -14.87344 -14.72399 -14.52002 -14.31323 -14.00916 -13.68790 -13.55048 -13.33971 -13.11315 -12.98728 -12.74936 -12.66607 -12.35650 -12.16907 -12.10645 -11.91382 -11.70324 -11.53772 -11.31858 -11.28435 -11.07246 -11.00807 -10.92705 -10.60997 -8.51458 -6.61287 0.40903 0.77762 1.06729 1.21158 1.24748 1.34654 1.57256 1.92172 2.08417 2.15258 2.66908 2.85173 2.86561 3.31040 3.62448 3.66020 3.74799 3.99769 4.02741 4.11783 4.14653 4.15389 4.29726 4.34517 4.51498 4.55634 4.60103 4.68038 4.80645 4.83007 5.00880 5.08743 5.15759 5.24863 5.27705 5.31444 5.51861 5.66578 5.80758 6.07280 6.15835 6.47429 6.70218 6.93589 7.05793 8.63770 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.024213 B = 0.003695 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.147147 B = 7575.395401 C = 7942.225581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.184 3.816 3 H 0.035 0.965 4 C -0.532 4.532 5 H 0.053 0.947 6 C 0.038 3.962 7 N -0.919 5.919 8 Si 0.926 3.074 9 H -0.271 1.271 10 H -0.262 1.262 11 H -0.253 1.253 12 O -0.352 6.352 13 C 0.435 3.565 14 O -0.545 6.545 15 C 0.128 3.872 16 N -0.569 5.569 17 C 0.708 3.292 18 O -0.571 6.571 19 N -0.695 5.695 20 C 0.166 3.834 21 C -0.143 4.143 22 C -0.174 4.174 23 C -0.174 4.174 24 C -0.140 4.140 25 C 0.529 3.471 26 O -0.486 6.486 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.043 0.957 30 H 0.277 0.723 31 H 0.158 0.842 32 H 0.161 0.839 33 H 0.453 0.547 34 H 0.114 0.886 35 H 0.089 0.911 36 H 0.048 0.952 37 H 0.124 0.876 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.117 0.883 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.346 8.213 27.624 29.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.130 3.870 3 H 0.053 0.947 4 C -0.570 4.570 5 H 0.071 0.929 6 C -0.164 4.164 7 N -0.556 5.556 8 Si 0.749 3.251 9 H -0.196 1.196 10 H -0.187 1.187 11 H -0.178 1.178 12 O -0.267 6.267 13 C 0.278 3.722 14 O -0.436 6.436 15 C 0.005 3.995 16 N -0.315 5.315 17 C 0.408 3.592 18 O -0.447 6.447 19 N -0.360 5.360 20 C 0.076 3.924 21 C -0.201 4.201 22 C -0.193 4.193 23 C -0.211 4.211 24 C -0.176 4.176 25 C 0.317 3.683 26 O -0.356 6.356 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.176 0.824 32 H 0.179 0.821 33 H 0.301 0.699 34 H 0.133 0.867 35 H 0.108 0.892 36 H 0.067 0.933 37 H 0.142 0.858 38 H 0.115 0.885 39 H 0.125 0.875 40 H 0.135 0.865 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.306 8.194 26.950 28.362 hybrid contribution -0.214 0.631 -0.742 0.998 sum 3.092 8.826 26.208 27.826 Atomic orbital electron populations 1.22137 0.95261 1.02440 1.00551 1.20867 0.93034 0.92921 0.80147 0.94721 1.20910 1.46101 0.95101 0.94847 0.92907 1.25622 0.92998 1.03089 0.94644 1.69946 1.44983 1.38224 1.02487 0.86062 0.79990 0.80303 0.78758 1.19623 1.18686 1.17752 1.86612 1.75835 1.43472 1.20787 1.24541 0.74278 0.86274 0.87114 1.90573 1.49920 1.18071 1.85040 1.21239 1.07967 0.89415 0.80892 1.46086 1.15258 1.38587 1.31555 1.15865 0.82950 0.80781 0.79564 1.91005 1.20686 1.58910 1.74096 1.45504 1.14256 1.39737 1.36536 1.20922 0.82405 0.96605 0.92496 1.22021 1.04503 0.90338 1.03248 1.22298 0.99199 1.10241 0.87596 1.23159 1.02200 0.96772 0.98929 1.23142 1.04631 0.94104 0.95743 1.21451 0.82321 0.79926 0.84581 1.90799 1.26328 1.65904 1.52523 0.91518 0.91587 0.93846 0.91302 0.82443 0.82117 0.69912 0.86719 0.89200 0.93262 0.85835 0.88455 0.87533 0.86480 0.86887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.62 9.53 71.98 0.69 -5.94 16 2 C 0.18 9.48 2.22 29.85 0.07 9.54 16 3 H 0.03 1.87 4.31 -2.39 -0.01 1.86 16 4 C -0.53 -31.28 9.25 25.60 0.24 -31.05 16 5 H 0.05 3.38 8.06 -2.91 -0.02 3.36 16 6 C 0.04 2.22 5.47 84.65 0.46 2.68 16 7 N -0.92 -55.90 13.96 21.45 0.30 -55.60 16 8 Si 0.93 44.86 26.99 68.60 1.85 46.71 16 9 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 10 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.25 -11.88 6.82 99.48 0.68 -11.20 16 12 O -0.35 -16.54 9.86 -51.40 -0.51 -17.04 16 13 C 0.43 17.98 8.00 71.24 0.57 18.55 16 14 O -0.54 -25.26 15.65 21.97 0.34 -24.91 16 15 C 0.13 3.78 6.29 85.63 0.54 4.32 16 16 N -0.57 -16.04 2.09 -777.21 -1.63 -17.67 16 17 C 0.71 18.90 8.62 179.44 1.55 20.44 16 18 O -0.57 -18.95 17.48 -3.83 -0.07 -19.02 16 19 N -0.69 -11.79 4.34 -439.81 -1.91 -13.70 16 20 C 0.17 2.82 1.15 2.98 0.00 2.82 16 21 C -0.14 -2.09 8.81 71.98 0.63 -1.46 16 22 C -0.17 -2.00 5.22 -10.80 -0.06 -2.05 16 23 C -0.17 -1.53 9.87 30.62 0.30 -1.23 16 24 C -0.14 -0.76 9.79 30.61 0.30 -0.46 16 25 C 0.53 14.06 6.99 87.94 0.61 14.67 16 26 O -0.49 -15.59 17.76 -2.92 -0.05 -15.64 16 27 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 28 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 29 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.28 15.55 8.31 -92.70 -0.77 14.78 16 31 H 0.16 3.95 8.01 -2.39 -0.02 3.93 16 32 H 0.16 3.96 7.86 -2.39 -0.02 3.94 16 33 H 0.45 4.82 8.75 -92.71 -0.81 4.00 16 34 H 0.11 0.85 7.57 -2.39 -0.02 0.83 16 35 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.10 0.95 6.86 -2.39 -0.02 0.94 16 39 H 0.11 0.83 8.14 -2.39 -0.02 0.82 16 40 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.11 0.30 7.78 -2.39 -0.02 0.28 16 Total: -1.00 -78.81 353.01 4.47 -74.34 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 0.23 Total: 11.66 kcal Atomic # 6 Polarization: 24.95 SS G_CDS: 5.91 Total: 30.85 kcal Atomic # 7 Polarization: -83.72 SS G_CDS: -3.24 Total: -86.96 kcal Atomic # 8 Polarization: -76.33 SS G_CDS: -0.28 Total: -76.62 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.85 Total: 46.71 kcal Total: -78.81 4.47 -74.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733709814.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.621 kcal (2) G-P(sol) polarization free energy of solvation -78.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds