Wall clock time and date at job start Fri Apr 10 2020 14:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.91541 * 2 1 4 4 C 1.55124 * 111.15891 * 236.07413 * 2 1 3 5 5 N 1.47432 * 104.93692 * 205.13156 * 4 2 1 6 6 C 1.34778 * 125.64292 * 203.96487 * 5 4 2 7 7 O 1.21604 * 119.99766 * 180.02562 * 6 5 4 8 8 C 1.47441 * 120.00212 * 0.04531 * 6 5 4 9 9 C 1.37987 * 124.15564 * 179.72277 * 8 6 5 10 10 S 1.72107 * 104.03652 * 179.89898 * 9 8 6 11 11 N 1.56406 * 96.15135 * 0.32900 * 10 9 8 12 12 N 1.27422 * 109.87509 * 359.79544 * 11 10 9 13 13 C 1.47017 * 108.70437 * 24.00488 * 5 4 2 14 14 C 1.54318 * 107.27462 * 358.93764 * 13 5 4 15 15 H 1.08998 * 110.72058 * 96.34446 * 14 13 5 16 16 C 1.52999 * 110.72472 * 219.44863 * 14 13 5 17 17 C 1.53006 * 109.46623 * 291.15597 * 16 14 13 18 18 N 1.46500 * 109.46998 * 179.97438 * 17 16 14 19 19 C 1.36931 * 120.00396 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99774 * 359.97438 * 19 18 17 21 21 C 1.38806 * 120.00545 * 180.02562 * 19 18 17 22 22 N 1.31622 * 119.99833 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00256 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47136 * 89.99695 * 23 21 19 25 25 H 1.48503 * 109.47098 * 209.99762 * 23 21 19 26 26 H 1.48496 * 109.47087 * 329.99418 * 23 21 19 27 27 H 1.09000 * 109.46825 * 296.09903 * 1 2 3 28 28 H 1.09007 * 109.46961 * 56.09603 * 1 2 3 29 29 H 1.08993 * 109.47349 * 176.09561 * 1 2 3 30 30 H 1.08996 * 110.42102 * 86.20771 * 4 2 1 31 31 H 1.09002 * 110.30029 * 323.99385 * 4 2 1 32 32 H 1.07997 * 127.97935 * 359.97334 * 9 8 6 33 33 H 1.09004 * 109.87932 * 239.52049 * 13 5 4 34 34 H 1.08999 * 110.00889 * 118.42901 * 13 5 4 35 35 H 1.09000 * 109.47486 * 171.15768 * 16 14 13 36 36 H 1.09001 * 109.47362 * 51.15045 * 16 14 13 37 37 H 1.08993 * 109.46955 * 300.00075 * 17 16 14 38 38 H 1.09000 * 109.47050 * 59.99904 * 17 16 14 39 39 H 0.97010 * 119.99909 * 359.97438 * 18 17 16 40 40 H 0.97001 * 119.99731 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0899 -0.8074 -1.2004 5 7 3.4298 -1.2474 -0.7705 6 6 4.4510 -1.5690 -1.5892 7 8 5.5171 -1.9211 -1.1219 8 6 4.2758 -1.4935 -3.0512 9 6 5.2628 -1.7970 -3.9664 10 16 4.5104 -1.5392 -5.4927 11 7 3.1233 -1.0949 -4.9228 12 7 3.1502 -1.1197 -3.6491 13 6 3.4671 -1.2781 0.6988 14 6 2.0862 -0.8079 1.2022 15 1 1.4450 -1.6614 1.4228 16 6 2.2349 0.0876 2.4338 17 6 2.7237 -0.7500 3.6173 18 7 2.8668 0.1076 4.7964 19 6 3.2950 -0.4254 5.9828 20 1 3.5268 -1.4781 6.0494 21 6 3.4300 0.3870 7.1002 22 7 3.1470 1.6699 7.0192 23 14 4.0135 -0.3403 8.7188 24 1 5.4947 -0.2630 8.7909 25 1 3.4224 0.4239 9.8465 26 1 3.5871 -1.7601 8.8058 27 1 -0.3633 0.4521 0.9229 28 1 -0.3633 0.5733 -0.8530 29 1 -0.3633 -1.0252 -0.0700 30 1 2.1642 -0.1733 -2.0838 31 1 1.4552 -1.6695 -1.4053 32 1 6.2738 -2.1224 -3.7703 33 1 4.2434 -0.6057 1.0641 34 1 3.6624 -2.2928 1.0458 35 1 1.2706 0.5332 2.6777 36 1 2.9572 0.8766 2.2242 37 1 2.0015 -1.5389 3.8268 38 1 3.6881 -1.1956 3.3733 39 1 2.6589 1.0532 4.7365 40 1 3.2417 2.2376 7.7999 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104461410.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:31:53 Heat of formation + Delta-G solvation = 48.245089 kcal Electronic energy + Delta-G solvation = -22880.810637 eV Core-core repulsion = 19437.539686 eV Total energy + Delta-G solvation = -3443.270950 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.51224 -39.92591 -38.10881 -35.14345 -33.39263 -32.47732 -32.02047 -30.21111 -28.02041 -26.91373 -26.49632 -24.67220 -23.21859 -22.21286 -21.00468 -20.48668 -19.99237 -18.87426 -17.12515 -16.86869 -16.49233 -16.35967 -15.84287 -15.25754 -14.68801 -14.58308 -14.35548 -13.75837 -13.41277 -13.25509 -13.19068 -13.03006 -12.67441 -12.59359 -12.43031 -12.21069 -11.74446 -11.43863 -11.15834 -10.99782 -10.82439 -10.64981 -10.56885 -10.49393 -10.43618 -10.35378 -10.33349 -10.21534 -9.91962 -9.62342 -8.83402 -8.79160 -6.88214 -5.73095 -3.01476 -0.36577 0.48504 1.08169 1.10446 2.69827 2.86333 3.43223 3.46510 3.51360 3.53078 4.21942 4.33845 4.43908 4.57927 4.66925 4.75390 4.90458 5.20657 5.28049 5.40689 5.53288 5.54753 5.59808 5.69528 5.76802 5.84503 5.88636 6.05095 6.06674 6.08403 6.18534 6.32981 6.40107 6.43409 6.87588 6.91733 7.04693 7.25447 7.73637 7.81116 8.46228 9.57089 10.15728 10.50081 11.50017 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.027035 B = 0.002515 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.454710 B =11132.159855 C =11902.133030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.103 4.103 3 H 0.086 0.914 4 C 0.102 3.898 5 N -0.597 5.597 6 C 0.612 3.388 7 O -0.525 6.525 8 C -0.015 4.015 9 C -0.236 4.236 10 S 0.460 5.540 11 N -0.292 5.292 12 N -0.207 5.207 13 C 0.111 3.889 14 C -0.090 4.090 15 H 0.088 0.912 16 C -0.115 4.115 17 C 0.151 3.849 18 N -0.734 5.734 19 C -0.238 4.238 20 H 0.070 0.930 21 C -0.016 4.016 22 N -0.935 5.935 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.209 0.791 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.018 0.982 38 H 0.019 0.981 39 H 0.383 0.617 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.874 -6.020 -28.764 29.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.122 4.122 3 H 0.105 0.895 4 C -0.021 4.021 5 N -0.329 5.329 6 C 0.395 3.605 7 O -0.401 6.401 8 C -0.163 4.163 9 C -0.393 4.393 10 S 0.596 5.404 11 N -0.273 5.273 12 N -0.078 5.078 13 C -0.010 4.010 14 C -0.109 4.109 15 H 0.106 0.894 16 C -0.153 4.153 17 C 0.023 3.977 18 N -0.378 5.378 19 C -0.369 4.369 20 H 0.088 0.912 21 C -0.212 4.212 22 N -0.584 5.584 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.114 0.886 31 H 0.090 0.910 32 H 0.226 0.774 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.036 0.964 38 H 0.037 0.963 39 H 0.217 0.783 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.404 -5.949 -29.844 30.464 hybrid contribution 1.086 -0.332 2.276 2.544 sum -0.319 -6.281 -27.568 28.277 Atomic orbital electron populations 1.21673 0.93465 1.02133 1.02378 1.22500 0.96469 0.99539 0.93690 0.89515 1.22767 0.82013 0.98985 0.98312 1.48280 1.12495 1.64486 1.07592 1.16237 0.83333 0.78612 0.82338 1.90871 1.25674 1.48159 1.75372 1.22659 0.89722 1.05934 0.97936 1.28899 1.07234 1.05357 0.97814 1.81549 1.02290 1.44931 1.11672 1.78694 1.19424 1.22262 1.06880 1.71704 1.22447 1.13790 0.99839 1.22234 0.98857 1.02526 0.77411 1.22308 0.94757 0.98967 0.94871 0.89411 1.21741 1.02099 0.98053 0.93419 1.20690 0.97114 0.93243 0.86604 1.42369 1.80840 1.08402 1.06215 1.19241 1.36370 0.93686 0.87583 0.91204 1.24744 1.02585 0.95665 0.98163 1.69663 1.55317 1.03862 1.29535 0.86184 0.78352 0.77972 0.83673 1.21723 1.21785 1.20769 0.91585 0.92410 0.92401 0.88577 0.91030 0.77379 0.90257 0.90758 0.91189 0.91657 0.96410 0.96333 0.78327 0.93556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.32 37.16 0.35 -0.91 16 2 C -0.10 -1.08 3.10 -88.35 -0.27 -1.36 16 3 H 0.09 0.95 8.05 -51.93 -0.42 0.53 16 4 C 0.10 1.09 5.56 -2.41 -0.01 1.08 16 5 N -0.60 -7.68 3.33 -171.64 -0.57 -8.25 16 6 C 0.61 8.35 7.84 -12.51 -0.10 8.25 16 7 O -0.53 -8.61 17.12 5.27 0.09 -8.52 16 8 C -0.02 -0.17 6.76 -83.78 -0.57 -0.74 16 9 C -0.24 -1.79 11.21 30.64 0.34 -1.45 16 10 S 0.46 2.57 23.38 -107.50 -2.51 0.06 16 11 N -0.29 -2.75 12.49 60.35 0.75 -1.99 16 12 N -0.21 -2.24 8.51 32.74 0.28 -1.97 16 13 C 0.11 1.51 5.73 -3.07 -0.02 1.49 16 14 C -0.09 -1.11 2.42 -88.79 -0.21 -1.32 16 15 H 0.09 1.04 8.04 -51.93 -0.42 0.63 16 16 C -0.12 -1.78 4.72 -26.73 -0.13 -1.91 16 17 C 0.15 3.03 6.13 -4.04 -0.02 3.01 16 18 N -0.73 -18.99 5.60 -59.91 -0.34 -19.32 16 19 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 20 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 21 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 22 N -0.93 -28.76 13.06 55.49 0.72 -28.04 16 23 Si 0.91 22.83 29.55 -169.99 -5.02 17.80 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 26 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 30 H 0.10 1.03 6.07 -51.93 -0.32 0.72 16 31 H 0.07 0.73 7.99 -51.93 -0.41 0.31 16 32 H 0.21 1.17 8.06 -52.49 -0.42 0.74 16 33 H 0.08 1.20 7.73 -51.93 -0.40 0.79 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.06 1.05 8.00 -51.93 -0.42 0.64 16 37 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.02 0.38 7.58 -51.93 -0.39 -0.01 16 39 H 0.38 10.35 7.67 -40.82 -0.31 10.04 16 40 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 346.75 15.07 5.23 5.23 Total: -1.00 -34.17 346.75 -7.85 -42.03 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -5.59 Total: 4.36 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -0.89 Total: -1.38 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: 0.85 Total: -59.57 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.09 Total: -8.52 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.80 kcal Atomic # 16 Polarization: 2.57 SS G_CDS: -2.51 Total: 0.06 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.17 -7.85 -42.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104461410.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.272 kcal (2) G-P(sol) polarization free energy of solvation -34.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds