Wall clock time and date at job start Fri Apr 10 2020 14:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 5 5 N 1.46495 * 109.46909 * 184.99684 * 4 2 1 6 6 C 1.38412 * 120.00008 * 179.97438 * 5 4 2 7 7 N 1.32489 * 119.21635 * 359.73502 * 6 5 4 8 8 C 1.32278 * 120.74158 * 179.71783 * 7 6 5 9 9 C 1.38601 * 119.19856 * 0.54248 * 8 7 6 10 10 C 1.38613 * 118.55561 * 359.73142 * 9 8 7 11 11 N 1.32274 * 119.19384 * 359.97438 * 10 9 8 12 12 N 1.46496 * 109.46995 * 120.00259 * 2 1 3 13 13 C 1.46503 * 120.00249 * 60.00308 * 12 2 1 14 14 C 1.34779 * 119.99876 * 240.00324 * 12 2 1 15 15 O 1.21275 * 120.00050 * 359.97438 * 14 12 2 16 16 C 1.50703 * 119.99897 * 180.02562 * 14 12 2 17 17 S 1.81003 * 109.46946 * 179.97438 * 16 14 12 18 18 C 1.76195 * 99.99868 * 180.02562 * 17 16 14 19 19 H 1.08007 * 120.00496 * 359.97438 * 18 17 16 20 20 C 1.38797 * 120.00364 * 180.02562 * 18 17 16 21 21 N 1.31632 * 119.99641 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00530 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47557 * 89.99431 * 22 20 18 24 24 H 1.48499 * 109.47135 * 209.99641 * 22 20 18 25 25 H 1.48503 * 109.46956 * 329.99137 * 22 20 18 26 26 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 28 28 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 29 29 H 1.08994 * 109.47510 * 305.00071 * 4 2 1 30 30 H 1.09001 * 109.47096 * 64.99934 * 4 2 1 31 31 H 0.96993 * 120.00506 * 0.02562 * 5 4 2 32 32 H 1.08005 * 120.40055 * 180.25022 * 8 7 6 33 33 H 1.07997 * 120.72468 * 179.75662 * 9 8 7 34 34 H 1.08001 * 120.40068 * 180.02562 * 10 9 8 35 35 H 1.08997 * 109.46807 * 89.99603 * 13 12 2 36 36 H 1.08998 * 109.47196 * 209.99887 * 13 12 2 37 37 H 1.09000 * 109.46808 * 330.00267 * 13 12 2 38 38 H 1.08992 * 109.46945 * 299.99747 * 16 14 12 39 39 H 1.09003 * 109.47186 * 60.00197 * 16 14 12 40 40 H 0.97000 * 120.00202 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.8262 -1.1906 6 6 4.1912 -1.4452 -2.2177 7 7 3.5164 -1.9419 -3.2439 8 6 4.1467 -2.5347 -4.2444 9 6 5.5280 -2.6424 -4.2043 10 6 6.2022 -2.1168 -3.1132 11 7 5.5116 -1.5312 -2.1490 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0933 1.4279 14 6 2.7932 -0.0356 2.0834 15 8 3.0865 1.1253 1.8913 16 6 3.2959 -0.7463 3.3135 17 16 4.3019 0.3912 4.2985 18 6 4.7457 -0.6701 5.6331 19 1 4.3950 -1.6915 5.6505 20 6 5.5450 -0.1933 6.6628 21 7 5.9720 1.0516 6.6420 22 14 6.0161 -1.3187 8.0774 23 1 7.2839 -2.0197 7.7513 24 1 6.1992 -0.5129 9.3112 25 1 4.9394 -2.3183 8.2943 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.6055 -1.7197 -1.2953 30 1 1.7517 -0.1582 -2.1370 31 1 3.9824 -0.4627 -0.4316 32 1 3.5914 -2.9341 -5.0803 33 1 6.0673 -3.1250 -5.0060 34 1 7.2783 -2.1838 -3.0516 35 1 2.4158 -2.7377 0.9715 36 1 1.6239 -2.2854 2.5001 37 1 0.6905 -2.3003 0.9844 38 1 2.4484 -1.0892 3.9068 39 1 3.9018 -1.6024 3.0165 40 1 6.5309 1.3848 7.3614 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104464192.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:35:37 Heat of formation + Delta-G solvation = 26.883517 kcal Electronic energy + Delta-G solvation = -22882.781710 eV Core-core repulsion = 19438.584453 eV Total energy + Delta-G solvation = -3444.197258 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.98382 -39.82809 -36.97088 -35.06064 -33.71995 -32.45013 -32.42488 -30.48840 -28.73352 -26.90868 -26.30292 -25.48446 -24.58507 -22.95447 -21.65702 -19.19992 -18.17615 -17.74845 -17.53448 -16.95419 -15.96422 -15.80269 -15.51576 -15.24864 -14.80288 -14.78325 -14.50705 -14.20724 -13.53462 -13.51718 -13.30148 -13.20807 -13.01960 -12.61377 -12.34727 -12.30002 -12.02291 -11.79855 -11.15187 -11.06584 -11.05618 -11.01735 -10.93628 -10.75475 -10.55294 -9.80769 -9.40476 -9.20064 -9.06328 -8.62854 -8.23103 -8.19091 -6.49914 -6.21412 -3.91954 1.07047 1.09772 2.72281 2.91910 2.97919 3.22624 3.25742 3.30303 3.58554 3.82858 4.06600 4.20366 4.50133 4.53135 4.67340 4.86030 5.03084 5.04979 5.08536 5.10493 5.12313 5.13791 5.34611 5.43052 5.45269 5.49748 5.57463 5.64323 5.71572 5.86899 5.90448 5.98404 6.12681 6.14749 6.57393 6.72591 6.98461 7.38278 7.45590 7.59801 8.24726 8.35306 8.48574 9.23945 10.86005 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.015148 B = 0.003299 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.955326 B = 8485.638417 C = 9636.214099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.121 3.879 3 H 0.109 0.891 4 C 0.131 3.869 5 N -0.690 5.690 6 C 0.566 3.434 7 N -0.572 5.572 8 C 0.189 3.811 9 C -0.301 4.301 10 C 0.195 3.805 11 N -0.568 5.568 12 N -0.619 5.619 13 C 0.080 3.920 14 C 0.533 3.467 15 O -0.515 6.515 16 C -0.150 4.150 17 S -0.060 6.060 18 C -0.535 4.535 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.419 0.581 32 H 0.164 0.836 33 H 0.141 0.859 34 H 0.166 0.834 35 H 0.052 0.948 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.379 -9.095 -21.042 24.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.017 3.983 3 H 0.127 0.873 4 C 0.006 3.994 5 N -0.326 5.326 6 C 0.209 3.791 7 N -0.296 5.296 8 C 0.022 3.978 9 C -0.328 4.328 10 C 0.026 3.974 11 N -0.290 5.290 12 N -0.356 5.356 13 C -0.064 4.064 14 C 0.321 3.679 15 O -0.389 6.389 16 C -0.301 4.301 17 S 0.167 5.833 18 C -0.683 4.683 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.258 0.742 32 H 0.181 0.819 33 H 0.159 0.841 34 H 0.183 0.817 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.580 -6.744 -20.445 23.175 hybrid contribution 0.672 -2.535 0.681 2.710 sum -7.908 -9.279 -19.764 23.222 Atomic orbital electron populations 1.22040 0.93675 1.02628 1.03112 1.21316 0.94862 0.98655 0.83454 0.87286 1.21689 0.78845 1.01174 0.97732 1.44158 1.06543 1.60780 1.21159 1.19354 0.85303 0.87611 0.86837 1.67932 1.40857 1.17342 1.03437 1.22884 0.91891 0.89086 0.93979 1.22489 0.96867 1.10289 1.03113 1.22951 1.00310 0.87096 0.87022 1.67966 1.07077 1.22884 1.31099 1.47938 1.52314 1.12613 1.22749 1.21739 1.00524 0.81477 1.02629 1.20421 0.77041 0.86765 0.83669 1.90704 1.56193 1.16434 1.75560 1.23558 1.04257 1.04746 0.97506 1.85389 1.60994 1.15130 1.21805 1.22853 1.37358 0.99713 1.08406 0.90984 1.24987 0.95099 0.95527 0.97940 1.70017 1.33094 1.14339 1.32805 0.86172 0.78911 0.79935 0.80511 1.20257 1.20756 1.19710 0.91985 0.91344 0.91137 0.91272 0.90625 0.74234 0.81907 0.84121 0.81724 0.92919 0.90555 0.91173 0.89233 0.89274 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 9.17 37.16 0.34 -1.00 16 2 C 0.12 1.38 2.80 -67.93 -0.19 1.19 16 3 H 0.11 1.49 6.90 -51.93 -0.36 1.13 16 4 C 0.13 1.40 4.94 -4.05 -0.02 1.38 16 5 N -0.69 -9.24 5.54 -62.31 -0.35 -9.59 16 6 C 0.57 7.82 8.43 -322.81 -2.72 5.10 16 7 N -0.57 -6.91 9.59 -13.93 -0.13 -7.04 16 8 C 0.19 1.72 11.30 -17.23 -0.19 1.52 16 9 C -0.30 -2.50 10.16 -39.31 -0.40 -2.90 16 10 C 0.19 2.02 11.30 -17.22 -0.19 1.83 16 11 N -0.57 -8.02 10.46 -13.93 -0.15 -8.16 16 12 N -0.62 -8.27 2.24 -173.93 -0.39 -8.66 16 13 C 0.08 0.84 9.40 59.85 0.56 1.40 16 14 C 0.53 9.78 7.40 -10.98 -0.08 9.70 16 15 O -0.51 -11.31 15.19 5.56 0.08 -11.23 16 16 C -0.15 -3.03 4.71 36.01 0.17 -2.87 16 17 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 18 C -0.54 -15.28 9.50 30.94 0.29 -14.98 16 19 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.24 13.22 55.49 0.73 -25.50 16 22 Si 0.92 21.50 29.55 -169.99 -5.02 16.47 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 H 0.06 0.45 6.66 -51.93 -0.35 0.11 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.70 7.84 -51.93 -0.41 0.29 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.42 6.47 7.98 -40.82 -0.33 6.15 16 32 H 0.16 0.88 8.06 -52.48 -0.42 0.46 16 33 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 34 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.82 6.44 -51.93 -0.33 0.48 16 37 H 0.07 0.56 6.43 -51.93 -0.33 0.23 16 38 H 0.09 1.68 7.40 -51.92 -0.38 1.29 16 39 H 0.09 1.71 8.11 -51.91 -0.42 1.29 16 40 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 352.90 15.07 5.32 5.32 Total: -1.00 -35.57 352.90 -10.06 -45.63 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -5.41 Total: 4.21 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -2.53 Total: 2.39 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: -0.28 Total: -58.96 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.08 Total: -11.23 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.57 -10.06 -45.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104464192.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.510 kcal (2) G-P(sol) polarization free energy of solvation -35.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds