Wall clock time and date at job start Fri Apr 10 2020 14:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 5 5 N 1.46495 * 109.46909 * 184.99684 * 4 2 1 6 6 C 1.38412 * 120.00008 * 179.97438 * 5 4 2 7 7 N 1.32489 * 119.21635 * 359.73502 * 6 5 4 8 8 C 1.32278 * 120.74158 * 179.71783 * 7 6 5 9 9 C 1.38601 * 119.19856 * 0.54248 * 8 7 6 10 10 C 1.38613 * 118.55561 * 359.73142 * 9 8 7 11 11 N 1.32274 * 119.19384 * 359.97438 * 10 9 8 12 12 N 1.46496 * 109.46995 * 120.00259 * 2 1 3 13 13 C 1.46503 * 120.00249 * 60.00308 * 12 2 1 14 14 C 1.34779 * 119.99876 * 240.00324 * 12 2 1 15 15 O 1.21275 * 120.00050 * 359.97438 * 14 12 2 16 16 C 1.50703 * 119.99897 * 180.02562 * 14 12 2 17 17 S 1.81003 * 109.46946 * 179.97438 * 16 14 12 18 18 C 1.76195 * 99.99868 * 180.02562 * 17 16 14 19 19 H 1.08007 * 120.00496 * 359.97438 * 18 17 16 20 20 C 1.38797 * 120.00364 * 180.02562 * 18 17 16 21 21 N 1.31632 * 119.99641 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00530 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47557 * 89.99431 * 22 20 18 24 24 H 1.48499 * 109.47135 * 209.99641 * 22 20 18 25 25 H 1.48503 * 109.46956 * 329.99137 * 22 20 18 26 26 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 28 28 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 29 29 H 1.08994 * 109.47510 * 305.00071 * 4 2 1 30 30 H 1.09001 * 109.47096 * 64.99934 * 4 2 1 31 31 H 0.96993 * 120.00506 * 0.02562 * 5 4 2 32 32 H 1.08005 * 120.40055 * 180.25022 * 8 7 6 33 33 H 1.07997 * 120.72468 * 179.75662 * 9 8 7 34 34 H 1.08001 * 120.40068 * 180.02562 * 10 9 8 35 35 H 1.08997 * 109.46807 * 89.99603 * 13 12 2 36 36 H 1.08998 * 109.47196 * 209.99887 * 13 12 2 37 37 H 1.09000 * 109.46808 * 330.00267 * 13 12 2 38 38 H 1.08992 * 109.46945 * 299.99747 * 16 14 12 39 39 H 1.09003 * 109.47186 * 60.00197 * 16 14 12 40 40 H 0.97000 * 120.00202 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.8262 -1.1906 6 6 4.1912 -1.4452 -2.2177 7 7 3.5164 -1.9419 -3.2439 8 6 4.1467 -2.5347 -4.2444 9 6 5.5280 -2.6424 -4.2043 10 6 6.2022 -2.1168 -3.1132 11 7 5.5116 -1.5312 -2.1490 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0933 1.4279 14 6 2.7932 -0.0356 2.0834 15 8 3.0865 1.1253 1.8913 16 6 3.2959 -0.7463 3.3135 17 16 4.3019 0.3912 4.2985 18 6 4.7457 -0.6701 5.6331 19 1 4.3950 -1.6915 5.6505 20 6 5.5450 -0.1933 6.6628 21 7 5.9720 1.0516 6.6420 22 14 6.0161 -1.3187 8.0774 23 1 7.2839 -2.0197 7.7513 24 1 6.1992 -0.5129 9.3112 25 1 4.9394 -2.3183 8.2943 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.6055 -1.7197 -1.2953 30 1 1.7517 -0.1582 -2.1370 31 1 3.9824 -0.4627 -0.4316 32 1 3.5914 -2.9341 -5.0803 33 1 6.0673 -3.1250 -5.0060 34 1 7.2783 -2.1838 -3.0516 35 1 2.4158 -2.7377 0.9715 36 1 1.6239 -2.2854 2.5001 37 1 0.6905 -2.3003 0.9844 38 1 2.4484 -1.0892 3.9068 39 1 3.9018 -1.6024 3.0165 40 1 6.5309 1.3848 7.3614 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104464192.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:35:36 Heat of formation + Delta-G solvation = 3.827804 kcal Electronic energy + Delta-G solvation = -22883.781481 eV Core-core repulsion = 19438.584453 eV Total energy + Delta-G solvation = -3445.197029 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.120 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.81872 -41.08148 -38.11605 -36.09390 -34.59791 -34.54671 -33.48799 -31.33739 -30.18322 -27.89197 -27.67325 -27.11453 -25.36502 -23.78985 -22.77868 -20.44881 -19.62575 -19.01878 -18.40292 -18.33829 -17.05650 -16.90381 -16.87216 -16.42235 -16.31986 -15.95006 -15.75550 -15.30053 -14.71318 -14.60235 -14.53406 -14.21258 -14.02105 -13.98770 -13.56345 -13.21144 -13.14419 -13.12494 -12.90537 -12.78903 -12.59482 -11.98783 -11.83669 -11.80099 -11.71902 -11.36802 -11.15532 -10.88817 -10.28489 -10.03989 -9.77037 -9.04978 -8.68133 -8.35815 -6.13966 0.29805 0.32381 1.23669 1.41205 1.43891 1.53156 1.54795 1.86369 2.10312 2.26244 2.98246 3.01000 3.24052 3.31564 3.60529 3.76662 3.83366 3.94117 4.08861 4.16752 4.21727 4.26116 4.43705 4.44377 4.52116 4.60889 4.63394 4.66297 4.79628 4.87093 4.94314 5.03608 5.26828 5.40076 5.44984 5.55155 5.88187 6.06628 6.18030 6.21657 6.48681 7.05302 7.10149 7.37885 8.73429 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.015148 B = 0.003299 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.955326 B = 8485.638417 C = 9636.214099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.122 3.878 3 H 0.080 0.920 4 C 0.142 3.858 5 N -0.703 5.703 6 C 0.544 3.456 7 N -0.582 5.582 8 C 0.181 3.819 9 C -0.284 4.284 10 C 0.174 3.826 11 N -0.612 5.612 12 N -0.602 5.602 13 C 0.073 3.927 14 C 0.533 3.467 15 O -0.562 6.562 16 C -0.124 4.124 17 S -0.149 6.149 18 C -0.547 4.547 19 H 0.081 0.919 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.999 3.001 23 H -0.268 1.268 24 H -0.277 1.277 25 H -0.258 1.258 26 H 0.084 0.916 27 H 0.055 0.945 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.404 0.596 32 H 0.203 0.797 33 H 0.179 0.821 34 H 0.187 0.813 35 H 0.055 0.945 36 H 0.077 0.923 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.620 -12.147 -22.645 27.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.018 3.982 3 H 0.098 0.902 4 C 0.017 3.983 5 N -0.338 5.338 6 C 0.187 3.813 7 N -0.306 5.306 8 C 0.014 3.986 9 C -0.309 4.309 10 C 0.008 3.992 11 N -0.335 5.335 12 N -0.337 5.337 13 C -0.069 4.069 14 C 0.320 3.680 15 O -0.440 6.440 16 C -0.275 4.275 17 S 0.079 5.921 18 C -0.694 4.694 19 H 0.099 0.901 20 C -0.191 4.191 21 N -0.547 5.547 22 Si 0.820 3.180 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.181 1.181 26 H 0.102 0.898 27 H 0.074 0.926 28 H 0.109 0.891 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.240 0.760 32 H 0.220 0.780 33 H 0.196 0.804 34 H 0.204 0.796 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.118 0.882 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.853 -9.856 -22.120 26.144 hybrid contribution 1.040 -1.660 0.956 2.180 sum -8.813 -11.516 -21.164 25.656 Atomic orbital electron populations 1.22006 0.90820 1.04202 1.03564 1.21465 0.96851 0.97056 0.82785 0.90169 1.21691 0.77708 1.01692 0.97202 1.44271 1.07294 1.61350 1.20920 1.19536 0.85551 0.88651 0.87575 1.67979 1.41149 1.17824 1.03671 1.23658 0.92788 0.88096 0.94050 1.22888 0.96780 1.08380 1.02837 1.23504 1.01518 0.86996 0.87202 1.67935 1.07788 1.24646 1.33161 1.47876 1.50212 1.13609 1.21978 1.22001 1.02437 0.79302 1.03163 1.20111 0.77703 0.86200 0.83955 1.90688 1.58317 1.18358 1.76617 1.23368 1.03584 1.02993 0.97543 1.85551 1.63402 1.19297 1.23885 1.23187 1.37601 0.99987 1.08670 0.90083 1.26127 0.94763 0.97186 1.01032 1.70184 1.33966 1.16590 1.33986 0.84955 0.78973 0.77739 0.76329 1.19372 1.20193 1.18137 0.89753 0.92573 0.89063 0.89946 0.89872 0.76034 0.78048 0.80367 0.79590 0.92678 0.90474 0.87655 0.87398 0.88153 0.91980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.17 71.98 0.66 -1.54 16 2 C 0.12 2.70 2.80 44.99 0.13 2.83 16 3 H 0.08 2.29 6.90 -2.39 -0.02 2.28 16 4 C 0.14 2.87 4.94 86.38 0.43 3.30 16 5 N -0.70 -19.11 5.54 -351.06 -1.94 -21.05 16 6 C 0.54 14.97 8.43 261.49 2.20 17.17 16 7 N -0.58 -13.15 9.59 -197.98 -1.90 -15.05 16 8 C 0.18 2.76 11.30 84.71 0.96 3.72 16 9 C -0.28 -3.89 10.16 22.45 0.23 -3.67 16 10 C 0.17 3.43 11.30 84.72 0.96 4.39 16 11 N -0.61 -17.48 10.46 -197.98 -2.07 -19.55 16 12 N -0.60 -15.74 2.24 -822.59 -1.85 -17.59 16 13 C 0.07 1.37 9.40 127.77 1.20 2.57 16 14 C 0.53 20.07 7.40 87.66 0.65 20.72 16 15 O -0.56 -26.10 15.19 -3.01 -0.05 -26.14 16 16 C -0.12 -5.07 4.71 71.24 0.34 -4.74 16 17 S -0.15 -8.40 20.57 -56.49 -1.16 -9.56 16 18 C -0.55 -31.71 9.50 67.95 0.65 -31.07 16 19 H 0.08 4.38 7.80 -2.91 -0.02 4.35 16 20 C 0.01 0.79 5.49 84.86 0.47 1.26 16 21 N -0.91 -56.64 13.22 21.65 0.29 -56.35 16 22 Si 1.00 44.14 29.55 68.60 2.03 46.16 16 23 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 24 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 25 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 26 H 0.08 0.90 6.66 -2.39 -0.02 0.88 16 27 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.08 1.46 7.84 -2.39 -0.02 1.44 16 30 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.40 13.18 7.98 -92.71 -0.74 12.44 16 32 H 0.20 1.34 8.06 -2.91 -0.02 1.31 16 33 H 0.18 1.03 8.06 -2.91 -0.02 1.01 16 34 H 0.19 2.52 8.06 -2.91 -0.02 2.50 16 35 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.08 1.47 6.44 -2.39 -0.02 1.46 16 37 H 0.11 1.28 6.43 -2.39 -0.02 1.26 16 38 H 0.11 3.99 7.40 -2.40 -0.02 3.97 16 39 H 0.10 3.86 8.11 -2.39 -0.02 3.84 16 40 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -82.38 352.90 2.52 -79.86 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: 0.32 Total: 24.33 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: 8.86 Total: 14.94 kcal Atomic # 7 Polarization: -122.11 SS G_CDS: -7.47 Total: -129.58 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.05 Total: -26.14 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.16 Total: -9.56 kcal Total: -82.38 2.52 -79.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104464192.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.684 kcal (2) G-P(sol) polarization free energy of solvation -82.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds