Wall clock time and date at job start Fri Apr 10 2020 14:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46901 * 2 1 4 4 C 1.52998 * 109.47292 * 239.99834 * 2 1 3 5 5 N 1.46497 * 109.47174 * 185.00006 * 4 2 1 6 6 C 1.46500 * 120.00009 * 89.99862 * 5 4 2 7 7 C 1.38408 * 119.99965 * 269.99493 * 5 4 2 8 8 N 1.32493 * 119.21653 * 359.73865 * 7 5 4 9 9 C 1.32284 * 120.73779 * 179.71391 * 8 7 5 10 10 C 1.38605 * 119.19695 * 0.54370 * 9 8 7 11 11 C 1.38603 * 118.55510 * 359.72676 * 10 9 8 12 12 N 1.32273 * 119.20521 * 0.02562 * 11 10 9 13 13 N 1.46496 * 109.47234 * 119.99509 * 2 1 3 14 14 C 1.34777 * 120.00258 * 275.00436 * 13 2 1 15 15 O 1.21279 * 120.00166 * 359.97438 * 14 13 2 16 16 C 1.50706 * 119.99762 * 179.97438 * 14 13 2 17 17 S 1.81003 * 109.46853 * 179.97438 * 16 14 13 18 18 C 1.76196 * 99.99846 * 179.97438 * 17 16 14 19 19 H 1.07998 * 120.00030 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99637 * 180.02562 * 18 17 16 21 21 N 1.31633 * 119.99688 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00457 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47357 * 89.99660 * 22 20 18 24 24 H 1.48495 * 109.47496 * 209.99879 * 22 20 18 25 25 H 1.48500 * 109.46916 * 330.00121 * 22 20 18 26 26 H 1.09001 * 109.47093 * 300.00316 * 1 2 3 27 27 H 1.09002 * 109.47121 * 60.00104 * 1 2 3 28 28 H 1.08994 * 109.47090 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47146 * 304.99888 * 4 2 1 30 30 H 1.09006 * 109.46999 * 64.99987 * 4 2 1 31 31 H 1.09002 * 109.46895 * 89.99769 * 6 5 4 32 32 H 1.08992 * 109.47460 * 209.99687 * 6 5 4 33 33 H 1.08997 * 109.46790 * 330.00293 * 6 5 4 34 34 H 1.07998 * 120.40018 * 180.24714 * 9 8 7 35 35 H 1.07997 * 120.72148 * 179.75132 * 10 9 8 36 36 H 1.08008 * 120.39674 * 180.02562 * 11 10 9 37 37 H 0.96999 * 119.99694 * 94.99826 * 13 2 1 38 38 H 1.09000 * 109.47318 * 299.99141 * 16 14 13 39 39 H 1.09000 * 109.47161 * 59.99772 * 16 14 13 40 40 H 0.97002 * 120.00245 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.1258 -1.9919 -0.5611 7 6 4.2882 0.1754 -1.7298 8 7 3.7060 1.2200 -2.3000 9 6 4.4301 2.1974 -2.8199 10 6 5.8128 2.1132 -2.7727 11 6 6.3889 1.0040 -2.1737 12 7 5.6071 0.0643 -1.6685 13 7 2.0183 -0.6905 1.1962 14 6 2.1470 -0.0181 2.3571 15 8 1.8589 1.1587 2.4115 16 6 2.6488 -0.7287 3.5878 17 16 2.7105 0.4346 4.9731 18 6 3.3121 -0.6309 6.2408 19 1 3.5201 -1.6677 6.0212 20 6 3.5178 -0.1380 7.5220 21 7 3.9678 -0.9340 8.4689 22 14 3.1561 1.6546 7.9024 23 1 1.7450 1.7920 8.3442 24 1 4.0608 2.1239 8.9824 25 1 3.3748 2.4733 6.6829 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.6054 -1.7198 -1.2951 30 1 1.7516 -0.1583 -2.1370 31 1 4.2822 -2.7688 -1.3095 32 1 5.0850 -1.7021 -0.1323 33 1 3.4756 -2.3721 0.2268 34 1 3.9497 3.0483 -3.2799 35 1 6.4278 2.8951 -3.1931 36 1 7.4634 0.9082 -2.1201 37 1 2.2490 -1.6316 1.1527 38 1 1.9759 -1.5504 3.8327 39 1 3.6480 -1.1212 3.3986 40 1 4.1119 -0.5895 9.3642 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108869766.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:35:46 Heat of formation + Delta-G solvation = 29.983450 kcal Electronic energy + Delta-G solvation = -23056.311720 eV Core-core repulsion = 19612.248886 eV Total energy + Delta-G solvation = -3444.062835 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.09634 -39.54368 -37.42929 -34.81814 -33.79483 -32.43413 -31.74028 -31.14162 -28.78633 -27.74389 -25.88759 -25.60289 -24.41101 -22.63228 -21.43353 -20.38960 -18.07391 -17.85670 -17.63093 -16.50755 -16.28089 -15.81630 -15.31196 -15.14791 -14.95638 -14.82966 -14.65893 -14.00226 -13.85716 -13.58063 -13.33695 -13.12114 -13.00472 -12.78881 -12.36353 -12.13062 -12.04467 -11.87366 -11.26201 -11.22848 -11.09833 -11.00334 -10.94628 -10.60651 -10.41706 -9.85020 -9.46719 -9.23635 -9.01281 -8.95565 -8.48885 -8.07710 -6.90751 -6.28504 -3.99874 1.03410 1.04880 2.42692 2.78818 3.02363 3.31697 3.35078 3.51238 3.66889 3.77334 4.02101 4.32322 4.33787 4.54210 4.61366 4.76713 4.82743 5.01125 5.07137 5.08890 5.10604 5.16915 5.29856 5.30924 5.37347 5.49597 5.57076 5.63896 5.69342 5.77243 5.99032 6.01398 6.10447 6.14592 6.58537 6.60376 6.73263 7.23353 7.63520 7.94666 8.12047 8.41947 8.54192 9.17858 10.80793 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.016675 B = 0.003366 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.805147 B = 8317.312163 C = 8846.995999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.127 3.873 3 H 0.091 0.909 4 C 0.126 3.874 5 N -0.583 5.583 6 C 0.102 3.898 7 C 0.565 3.435 8 N -0.568 5.568 9 C 0.192 3.808 10 C -0.297 4.297 11 C 0.192 3.808 12 N -0.568 5.568 13 N -0.730 5.730 14 C 0.532 3.468 15 O -0.519 6.519 16 C -0.124 4.124 17 S -0.141 6.141 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.881 5.881 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.236 1.236 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.053 0.947 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.165 0.835 35 H 0.142 0.858 36 H 0.165 0.835 37 H 0.393 0.607 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.239 -0.066 -26.037 26.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.021 3.979 3 H 0.109 0.891 4 C 0.002 3.998 5 N -0.298 5.298 6 C -0.041 4.041 7 C 0.210 3.790 8 N -0.290 5.290 9 C 0.024 3.976 10 C -0.323 4.323 11 C 0.024 3.976 12 N -0.290 5.290 13 N -0.386 5.386 14 C 0.318 3.682 15 O -0.393 6.393 16 C -0.274 4.274 17 S 0.085 5.915 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.160 1.160 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.120 0.880 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.182 0.818 35 H 0.160 0.840 36 H 0.182 0.818 37 H 0.229 0.771 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.353 0.962 -25.284 25.338 hybrid contribution 0.972 -0.478 0.088 1.087 sum -0.380 0.483 -25.195 25.203 Atomic orbital electron populations 1.22117 0.94690 1.02126 1.03015 1.21376 0.94123 0.98456 0.83995 0.89052 1.21832 0.77925 1.01491 0.98583 1.45912 1.04565 1.19366 1.60001 1.21708 0.99493 0.86133 0.96762 1.19256 0.85494 0.86588 0.87646 1.67887 1.41104 1.03332 1.16711 1.22914 0.90861 0.94272 0.89533 1.22512 0.97343 1.02753 1.09660 1.22926 0.99915 0.87396 0.87326 1.67903 1.04232 1.32262 1.24604 1.46145 1.69228 1.13664 1.09537 1.20256 0.76900 0.87243 0.83848 1.90692 1.48467 1.15725 1.84446 1.23280 1.04321 1.03430 0.96405 1.84795 1.87176 1.16520 1.03030 1.22321 1.50601 0.98664 0.95275 0.89417 1.24706 0.93359 0.98259 0.94943 1.69940 1.43513 1.35778 1.02514 0.86737 0.79319 0.85278 0.80539 1.19192 1.19926 1.15976 0.91433 0.91573 0.92447 0.89938 0.88030 0.92837 0.89787 0.91531 0.81765 0.84044 0.81763 0.77092 0.88602 0.88695 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.48 37.16 0.35 -1.31 16 2 C 0.13 1.50 2.88 -67.93 -0.20 1.30 16 3 H 0.09 1.41 7.58 -51.93 -0.39 1.01 16 4 C 0.13 1.15 5.05 -4.04 -0.02 1.13 16 5 N -0.58 -6.33 2.83 -183.94 -0.52 -6.85 16 6 C 0.10 0.94 10.06 59.85 0.60 1.54 16 7 C 0.57 7.19 8.17 -322.80 -2.64 4.55 16 8 N -0.57 -6.84 9.11 -13.93 -0.13 -6.97 16 9 C 0.19 1.81 11.30 -17.22 -0.19 1.61 16 10 C -0.30 -2.48 10.16 -39.31 -0.40 -2.88 16 11 C 0.19 1.86 11.30 -17.23 -0.19 1.66 16 12 N -0.57 -7.07 9.11 -13.93 -0.13 -7.19 16 13 N -0.73 -9.55 4.52 -53.81 -0.24 -9.80 16 14 C 0.53 9.71 7.81 -10.98 -0.09 9.62 16 15 O -0.52 -11.55 15.52 5.56 0.09 -11.46 16 16 C -0.12 -2.44 6.16 36.01 0.22 -2.22 16 17 S -0.14 -3.66 18.55 -107.50 -1.99 -5.65 16 18 C -0.52 -15.18 10.04 30.94 0.31 -14.87 16 19 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 20 C 0.10 2.83 5.50 -17.43 -0.10 2.74 16 21 N -0.88 -26.79 13.97 55.49 0.78 -26.01 16 22 Si 0.86 22.07 27.74 -169.99 -4.72 17.36 16 23 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.24 -6.10 6.74 56.52 0.38 -5.72 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.55 8.07 -51.93 -0.42 0.13 16 30 H 0.10 0.93 7.33 -51.93 -0.38 0.55 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.91 7.33 -51.93 -0.38 0.53 16 33 H 0.07 0.51 5.62 -51.93 -0.29 0.21 16 34 H 0.17 1.01 8.06 -52.49 -0.42 0.58 16 35 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 36 H 0.17 1.06 8.06 -52.48 -0.42 0.64 16 37 H 0.39 4.06 6.13 -40.82 -0.25 3.81 16 38 H 0.10 1.75 8.14 -51.92 -0.42 1.32 16 39 H 0.09 1.77 8.14 -51.92 -0.42 1.34 16 40 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 351.66 15.07 5.30 5.30 Total: -1.00 -36.79 351.66 -9.40 -46.20 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -5.50 Total: 2.21 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -2.34 Total: 2.88 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: -0.24 Total: -56.82 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.46 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.72 Total: 17.36 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.79 -9.40 -46.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108869766.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.179 kcal (2) G-P(sol) polarization free energy of solvation -36.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds