Wall clock time and date at job start Fri Apr 10 2020 14:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46901 * 2 1 4 4 C 1.52998 * 109.47292 * 239.99834 * 2 1 3 5 5 N 1.46497 * 109.47174 * 185.00006 * 4 2 1 6 6 C 1.46500 * 120.00009 * 89.99862 * 5 4 2 7 7 C 1.38408 * 119.99965 * 269.99493 * 5 4 2 8 8 N 1.32493 * 119.21653 * 359.73865 * 7 5 4 9 9 C 1.32284 * 120.73779 * 179.71391 * 8 7 5 10 10 C 1.38605 * 119.19695 * 0.54370 * 9 8 7 11 11 C 1.38603 * 118.55510 * 359.72676 * 10 9 8 12 12 N 1.32273 * 119.20521 * 0.02562 * 11 10 9 13 13 N 1.46496 * 109.47234 * 119.99509 * 2 1 3 14 14 C 1.34777 * 120.00258 * 275.00436 * 13 2 1 15 15 O 1.21279 * 120.00166 * 359.97438 * 14 13 2 16 16 C 1.50706 * 119.99762 * 179.97438 * 14 13 2 17 17 S 1.81003 * 109.46853 * 179.97438 * 16 14 13 18 18 C 1.76196 * 99.99846 * 179.97438 * 17 16 14 19 19 H 1.07998 * 120.00030 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99637 * 180.02562 * 18 17 16 21 21 N 1.31633 * 119.99688 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00457 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47357 * 89.99660 * 22 20 18 24 24 H 1.48495 * 109.47496 * 209.99879 * 22 20 18 25 25 H 1.48500 * 109.46916 * 330.00121 * 22 20 18 26 26 H 1.09001 * 109.47093 * 300.00316 * 1 2 3 27 27 H 1.09002 * 109.47121 * 60.00104 * 1 2 3 28 28 H 1.08994 * 109.47090 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47146 * 304.99888 * 4 2 1 30 30 H 1.09006 * 109.46999 * 64.99987 * 4 2 1 31 31 H 1.09002 * 109.46895 * 89.99769 * 6 5 4 32 32 H 1.08992 * 109.47460 * 209.99687 * 6 5 4 33 33 H 1.08997 * 109.46790 * 330.00293 * 6 5 4 34 34 H 1.07998 * 120.40018 * 180.24714 * 9 8 7 35 35 H 1.07997 * 120.72148 * 179.75132 * 10 9 8 36 36 H 1.08008 * 120.39674 * 180.02562 * 11 10 9 37 37 H 0.96999 * 119.99694 * 94.99826 * 13 2 1 38 38 H 1.09000 * 109.47318 * 299.99141 * 16 14 13 39 39 H 1.09000 * 109.47161 * 59.99772 * 16 14 13 40 40 H 0.97002 * 120.00245 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.1258 -1.9919 -0.5611 7 6 4.2882 0.1754 -1.7298 8 7 3.7060 1.2200 -2.3000 9 6 4.4301 2.1974 -2.8199 10 6 5.8128 2.1132 -2.7727 11 6 6.3889 1.0040 -2.1737 12 7 5.6071 0.0643 -1.6685 13 7 2.0183 -0.6905 1.1962 14 6 2.1470 -0.0181 2.3571 15 8 1.8589 1.1587 2.4115 16 6 2.6488 -0.7287 3.5878 17 16 2.7105 0.4346 4.9731 18 6 3.3121 -0.6309 6.2408 19 1 3.5201 -1.6677 6.0212 20 6 3.5178 -0.1380 7.5220 21 7 3.9678 -0.9340 8.4689 22 14 3.1561 1.6546 7.9024 23 1 1.7450 1.7920 8.3442 24 1 4.0608 2.1239 8.9824 25 1 3.3748 2.4733 6.6829 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.6054 -1.7198 -1.2951 30 1 1.7516 -0.1583 -2.1370 31 1 4.2822 -2.7688 -1.3095 32 1 5.0850 -1.7021 -0.1323 33 1 3.4756 -2.3721 0.2268 34 1 3.9497 3.0483 -3.2799 35 1 6.4278 2.8951 -3.1931 36 1 7.4634 0.9082 -2.1201 37 1 2.2490 -1.6316 1.1527 38 1 1.9759 -1.5504 3.8327 39 1 3.6480 -1.1212 3.3986 40 1 4.1119 -0.5895 9.3642 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108869766.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:35:45 Heat of formation + Delta-G solvation = 6.016567 kcal Electronic energy + Delta-G solvation = -23057.351002 eV Core-core repulsion = 19612.248886 eV Total energy + Delta-G solvation = -3445.102117 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.120 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.86004 -40.84833 -38.40693 -35.86639 -34.69392 -34.57705 -32.94495 -31.89292 -30.20694 -28.51886 -27.87005 -26.64539 -25.14407 -23.53555 -22.37904 -21.67583 -19.93256 -18.80489 -18.44889 -17.98832 -17.38270 -17.10095 -16.59088 -16.37488 -16.20292 -15.92005 -15.70392 -15.35101 -15.03218 -14.86679 -14.54563 -14.25643 -14.09646 -13.94347 -13.48383 -13.37692 -13.04778 -13.02767 -12.93469 -12.82511 -12.59971 -12.13003 -11.89381 -11.83418 -11.75475 -11.20028 -11.19178 -10.97688 -10.56385 -10.18131 -10.01487 -9.02625 -8.83734 -8.53747 -6.24699 0.30226 0.31109 0.96074 1.28804 1.44164 1.52614 1.55363 1.71541 2.20135 2.24569 2.69531 2.84486 3.00661 3.32665 3.59098 3.73070 3.91027 3.93053 4.07352 4.17661 4.28705 4.35939 4.40979 4.42317 4.50538 4.54924 4.64073 4.72014 4.81611 4.94865 4.95365 5.03638 5.28051 5.41871 5.51445 5.68790 5.88502 5.96100 6.09151 6.43105 6.47314 6.91551 7.18643 7.34842 8.58767 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.016675 B = 0.003366 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.805147 B = 8317.312163 C = 8846.995999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.130 3.870 3 H 0.053 0.947 4 C 0.134 3.866 5 N -0.590 5.590 6 C 0.102 3.898 7 C 0.539 3.461 8 N -0.588 5.588 9 C 0.176 3.824 10 C -0.288 4.288 11 C 0.174 3.826 12 N -0.594 5.594 13 N -0.704 5.704 14 C 0.535 3.465 15 O -0.564 6.564 16 C -0.110 4.110 17 S -0.178 6.178 18 C -0.529 4.529 19 H 0.063 0.937 20 C 0.047 3.953 21 N -0.916 5.916 22 Si 0.913 3.087 23 H -0.261 1.261 24 H -0.257 1.257 25 H -0.241 1.241 26 H 0.035 0.965 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.117 0.883 30 H 0.104 0.896 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.194 0.806 35 H 0.174 0.826 36 H 0.191 0.809 37 H 0.411 0.589 38 H 0.115 0.885 39 H 0.108 0.892 40 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.595 -0.040 -28.016 28.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.024 3.976 3 H 0.071 0.929 4 C 0.010 3.990 5 N -0.306 5.306 6 C -0.041 4.041 7 C 0.184 3.816 8 N -0.311 5.311 9 C 0.009 3.991 10 C -0.313 4.313 11 C 0.008 3.992 12 N -0.317 5.317 13 N -0.360 5.360 14 C 0.320 3.680 15 O -0.443 6.443 16 C -0.261 4.261 17 S 0.049 5.951 18 C -0.676 4.676 19 H 0.081 0.919 20 C -0.158 4.158 21 N -0.554 5.554 22 Si 0.735 3.265 23 H -0.186 1.186 24 H -0.182 1.182 25 H -0.165 1.165 26 H 0.054 0.946 27 H 0.104 0.896 28 H 0.100 0.900 29 H 0.135 0.865 30 H 0.123 0.877 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.210 0.790 35 H 0.192 0.808 36 H 0.208 0.792 37 H 0.249 0.751 38 H 0.133 0.867 39 H 0.127 0.873 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.693 0.948 -27.303 27.372 hybrid contribution 1.132 -0.539 0.537 1.364 sum -0.561 0.409 -26.767 26.776 Atomic orbital electron populations 1.22054 0.93191 1.03550 1.02439 1.21467 0.95173 0.96736 0.84225 0.92902 1.21864 0.77309 1.02995 0.96784 1.46107 1.05010 1.19389 1.60060 1.21755 0.98804 0.86009 0.97508 1.19621 0.86010 0.87394 0.88584 1.67917 1.41869 1.03884 1.17426 1.23548 0.91727 0.94546 0.89242 1.22872 0.97294 1.02825 1.08277 1.23521 1.01127 0.87473 0.87101 1.67924 1.04527 1.33595 1.25678 1.45936 1.67345 1.14292 1.08391 1.19971 0.76773 0.86601 0.84622 1.90681 1.50860 1.17556 1.85171 1.23264 1.05882 1.02300 0.94635 1.84747 1.87002 1.18530 1.04833 1.22448 1.50445 0.98125 0.96600 0.91886 1.25533 0.93216 1.02161 0.94893 1.70012 1.44519 1.37670 1.03187 0.85885 0.79675 0.80467 0.80448 1.18555 1.18162 1.16461 0.94602 0.89578 0.89951 0.86456 0.87735 0.91345 0.91900 0.89984 0.78952 0.80834 0.79233 0.75073 0.86658 0.87334 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.48 71.98 0.68 -2.21 16 2 C 0.13 2.89 2.88 44.99 0.13 3.01 16 3 H 0.05 1.64 7.58 -2.39 -0.02 1.62 16 4 C 0.13 2.15 5.05 86.38 0.44 2.58 16 5 N -0.59 -12.00 2.83 -735.85 -2.08 -14.08 16 6 C 0.10 1.71 10.06 127.77 1.29 3.00 16 7 C 0.54 13.39 8.17 261.48 2.14 15.53 16 8 N -0.59 -13.73 9.11 -197.98 -1.80 -15.54 16 9 C 0.18 3.08 11.30 84.71 0.96 4.03 16 10 C -0.29 -4.26 10.16 22.44 0.23 -4.04 16 11 C 0.17 3.17 11.30 84.71 0.96 4.13 16 12 N -0.59 -14.54 9.11 -197.98 -1.80 -16.34 16 13 N -0.70 -17.30 4.52 -442.54 -2.00 -19.30 16 14 C 0.53 19.20 7.81 87.66 0.68 19.88 16 15 O -0.56 -25.37 15.52 -3.03 -0.05 -25.42 16 16 C -0.11 -4.26 6.16 71.24 0.44 -3.82 16 17 S -0.18 -9.21 18.55 -56.49 -1.05 -10.26 16 18 C -0.53 -31.19 10.04 67.96 0.68 -30.51 16 19 H 0.06 3.90 8.03 -2.91 -0.02 3.88 16 20 C 0.05 2.82 5.50 84.86 0.47 3.29 16 21 N -0.92 -56.17 13.97 21.65 0.30 -55.86 16 22 Si 0.91 45.70 27.74 68.60 1.90 47.60 16 23 H -0.26 -12.70 7.11 99.48 0.71 -11.99 16 24 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 25 H -0.24 -12.14 6.74 99.48 0.67 -11.47 16 26 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.12 1.09 8.07 -2.39 -0.02 1.07 16 30 H 0.10 1.69 7.33 -2.38 -0.02 1.67 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 32 H 0.06 1.34 7.33 -2.39 -0.02 1.32 16 33 H 0.08 1.04 5.62 -2.39 -0.01 1.03 16 34 H 0.19 1.98 8.06 -2.91 -0.02 1.95 16 35 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 36 H 0.19 2.17 8.06 -2.91 -0.02 2.14 16 37 H 0.41 7.34 6.13 -92.71 -0.57 6.77 16 38 H 0.12 4.03 8.14 -2.39 -0.02 4.01 16 39 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 40 H 0.28 15.71 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -82.25 351.66 2.96 -79.29 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.45 Total: 15.02 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: 9.09 Total: 14.89 kcal Atomic # 7 Polarization: -113.74 SS G_CDS: -7.39 Total: -121.12 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.05 Total: -25.42 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.90 Total: 47.60 kcal Atomic # 16 Polarization: -9.21 SS G_CDS: -1.05 Total: -10.26 kcal Total: -82.25 2.96 -79.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108869766.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.309 kcal (2) G-P(sol) polarization free energy of solvation -82.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds