Wall clock time and date at job start Fri Apr 10 2020 14:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.47040 * 2 1 4 4 C 1.52996 * 109.47015 * 120.00015 * 2 1 3 5 5 N 1.46504 * 109.46960 * 175.00160 * 4 2 1 6 6 C 1.46496 * 120.00083 * 90.00343 * 5 4 2 7 7 C 1.34781 * 119.99780 * 269.99820 * 5 4 2 8 8 O 1.21272 * 120.00057 * 0.02562 * 7 5 4 9 9 C 1.50697 * 119.99675 * 179.97438 * 7 5 4 10 10 S 1.81001 * 109.47060 * 180.02562 * 9 7 5 11 11 C 1.76198 * 99.99993 * 180.02562 * 10 9 7 12 12 H 1.07998 * 120.00082 * 359.97438 * 11 10 9 13 13 C 1.38798 * 119.99835 * 180.02562 * 11 10 9 14 14 N 1.31628 * 120.00346 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00083 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47039 * 89.99742 * 15 13 11 17 17 H 1.48499 * 109.47410 * 210.00318 * 15 13 11 18 18 H 1.48505 * 109.46960 * 330.00058 * 15 13 11 19 19 N 1.46504 * 109.47200 * 240.00348 * 2 1 3 20 20 C 1.38405 * 119.99875 * 84.99836 * 19 2 1 21 21 N 1.32494 * 119.21344 * 179.97438 * 20 19 2 22 22 C 1.32279 * 120.73978 * 179.97438 * 21 20 19 23 23 C 1.38606 * 119.19607 * 0.02562 * 22 21 20 24 24 C 1.38603 * 118.55867 * 0.27683 * 23 22 21 25 25 N 1.32278 * 119.19545 * 359.43570 * 24 23 22 26 26 H 1.09009 * 109.46873 * 60.00063 * 1 2 3 27 27 H 1.08996 * 109.46661 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47359 * 300.00158 * 1 2 3 29 29 H 1.09004 * 109.47419 * 295.00207 * 4 2 1 30 30 H 1.08996 * 109.46888 * 55.00286 * 4 2 1 31 31 H 1.08996 * 109.47394 * 89.99456 * 6 5 4 32 32 H 1.09003 * 109.47203 * 210.00189 * 6 5 4 33 33 H 1.08998 * 109.46849 * 329.99756 * 6 5 4 34 34 H 1.08996 * 109.47434 * 300.00198 * 9 7 5 35 35 H 1.09001 * 109.47038 * 60.00311 * 9 7 5 36 36 H 0.97005 * 120.00254 * 179.97438 * 14 13 11 37 37 H 0.96996 * 119.99600 * 264.99713 * 19 2 1 38 38 H 1.08002 * 120.39784 * 180.02562 * 22 21 20 39 39 H 1.08002 * 120.71685 * 179.97438 * 23 22 21 40 40 H 1.07998 * 120.39901 * 179.72769 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1905 6 6 4.3343 0.2340 1.7613 7 6 4.0758 -1.8987 0.6115 8 8 3.3852 -2.7763 0.1387 9 6 5.5777 -2.0065 0.5507 10 16 6.0388 -3.5465 -0.2811 11 6 7.7947 -3.4169 -0.2134 12 1 8.2552 -2.5568 0.2497 13 6 8.5860 -4.4197 -0.7562 14 7 8.0247 -5.4678 -1.3211 15 14 10.4476 -4.2820 -0.6852 16 1 10.9430 -4.9107 0.5657 17 1 11.0404 -4.9760 -1.8565 18 1 10.8392 -2.8497 -0.7081 19 7 2.0184 -0.6905 -1.1962 20 6 2.1506 0.0000 -2.3884 21 7 2.5942 -0.6397 -3.4605 22 6 2.7316 -0.0094 -4.6153 23 6 2.4057 1.3354 -4.6945 24 6 1.9507 1.9754 -3.5524 25 7 1.8309 1.2851 -2.4304 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.7516 -0.1583 2.1370 30 1 1.6054 -1.7198 1.2950 31 1 4.5424 0.0093 2.8073 32 1 5.2722 0.2953 1.2092 33 1 3.8090 1.1866 1.6919 34 1 5.9806 -1.1594 -0.0045 35 1 5.9834 -2.0039 1.5624 36 1 8.5778 -6.1685 -1.7009 37 1 2.2491 -1.6317 -1.1527 38 1 3.0933 -0.5364 -5.4859 39 1 2.5089 1.8742 -5.6249 40 1 1.6926 3.0237 -3.5794 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115630335.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:35:50 Heat of formation + Delta-G solvation = 26.354791 kcal Electronic energy + Delta-G solvation = -23370.358587 eV Core-core repulsion = 19926.138402 eV Total energy + Delta-G solvation = -3444.220185 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.120 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.81037 -39.70567 -36.87237 -35.03368 -33.50726 -32.41691 -32.33830 -29.69924 -29.21008 -27.29221 -25.66993 -25.21065 -24.49699 -23.34567 -21.14885 -19.32835 -18.27253 -17.61006 -17.31543 -16.64177 -15.91078 -15.83993 -15.56114 -14.97231 -14.79481 -14.66469 -14.36935 -13.98167 -13.52435 -13.34849 -13.17144 -12.97855 -12.89546 -12.55118 -12.41782 -12.21401 -11.94970 -11.76057 -11.28199 -11.05539 -11.01320 -10.82050 -10.75191 -10.71479 -10.39726 -9.80092 -9.44115 -9.05415 -8.96843 -8.59779 -8.21281 -7.95955 -6.47673 -6.20317 -3.90391 1.28404 1.31094 2.84400 2.96912 3.07724 3.22742 3.26553 3.30813 3.60655 4.04245 4.21212 4.28110 4.70055 4.71161 4.77038 4.91373 5.03898 5.13898 5.14768 5.21966 5.23505 5.30884 5.32821 5.40770 5.57961 5.58800 5.65278 5.70147 5.84474 5.88163 5.89768 6.08602 6.12554 6.37286 6.54217 6.96507 7.25554 7.45546 7.60507 7.68311 8.36111 8.45028 8.54352 9.24918 10.87039 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.014161 B = 0.003992 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.731078 B = 7011.984341 C = 8173.832189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.142 3.858 3 H 0.089 0.911 4 C 0.105 3.895 5 N -0.622 5.622 6 C 0.081 3.919 7 C 0.539 3.461 8 O -0.518 6.518 9 C -0.150 4.150 10 S -0.056 6.056 11 C -0.536 4.536 12 H 0.071 0.929 13 C 0.075 3.925 14 N -0.867 5.867 15 Si 0.917 3.083 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.273 1.273 19 N -0.685 5.685 20 C 0.567 3.433 21 N -0.563 5.563 22 C 0.196 3.804 23 C -0.305 4.305 24 C 0.186 3.814 25 N -0.574 5.574 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.268 0.732 37 H 0.426 0.574 38 H 0.165 0.835 39 H 0.139 0.861 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.412 17.100 1.207 21.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.035 3.965 3 H 0.107 0.893 4 C -0.019 4.019 5 N -0.358 5.358 6 C -0.062 4.062 7 C 0.328 3.672 8 O -0.393 6.393 9 C -0.301 4.301 10 S 0.171 5.829 11 C -0.684 4.684 12 H 0.089 0.911 13 C -0.135 4.135 14 N -0.502 5.502 15 Si 0.744 3.256 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.197 1.197 19 N -0.326 5.326 20 C 0.211 3.789 21 N -0.284 5.284 22 C 0.027 3.973 23 C -0.331 4.331 24 C 0.018 3.982 25 N -0.298 5.298 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.270 0.730 38 H 0.182 0.818 39 H 0.157 0.843 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -14.553 15.166 1.513 21.073 hybrid contribution 2.281 1.390 -0.270 2.685 sum -12.271 16.556 1.243 20.646 Atomic orbital electron populations 1.22145 0.95011 1.02354 1.02420 1.21377 0.93939 0.97486 0.83747 0.89284 1.21813 0.80647 1.02656 0.96784 1.47836 1.05909 1.22000 1.60017 1.21769 0.95795 0.90091 0.98585 1.20349 0.90373 0.80300 0.76160 1.90607 1.64407 1.38941 1.45393 1.23541 0.93485 1.07563 1.05479 1.85390 1.05556 1.18026 1.73922 1.22858 0.91179 1.09752 1.44634 0.91057 1.24972 0.99494 0.94504 0.94503 1.70017 1.35880 1.08624 1.35684 0.86190 0.83189 0.78362 0.77888 1.20263 1.20725 1.19734 1.44693 1.69176 1.13904 1.04860 1.19423 0.87093 0.85476 0.86946 1.68016 1.20540 1.40206 0.99663 1.22963 0.88671 0.91426 0.94275 1.22454 1.11295 0.97815 1.01516 1.22830 0.89038 0.99258 0.87041 1.67916 1.24772 1.07383 1.29740 0.91901 0.92298 0.91596 0.88985 0.89135 0.92516 0.90791 0.91353 0.89486 0.89336 0.92195 0.73047 0.81818 0.84315 0.82172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.50 37.16 0.35 -1.22 16 2 C 0.14 1.67 2.87 -67.93 -0.20 1.47 16 3 H 0.09 1.06 7.50 -51.93 -0.39 0.67 16 4 C 0.10 1.18 5.14 -4.04 -0.02 1.16 16 5 N -0.62 -8.56 2.77 -181.58 -0.50 -9.06 16 6 C 0.08 0.85 10.24 59.84 0.61 1.46 16 7 C 0.54 10.09 6.99 -10.99 -0.08 10.01 16 8 O -0.52 -11.24 13.18 5.56 0.07 -11.16 16 9 C -0.15 -3.11 4.71 36.00 0.17 -2.94 16 10 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 11 C -0.54 -15.44 9.50 30.94 0.29 -15.14 16 12 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 13 C 0.07 2.15 5.49 -17.43 -0.10 2.05 16 14 N -0.87 -26.34 13.22 55.49 0.73 -25.61 16 15 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 19 N -0.69 -10.66 4.62 -55.79 -0.26 -10.92 16 20 C 0.57 9.14 8.40 -322.81 -2.71 6.43 16 21 N -0.56 -9.56 10.46 -13.93 -0.15 -9.70 16 22 C 0.20 2.55 11.30 -17.22 -0.19 2.36 16 23 C -0.30 -3.19 10.16 -39.31 -0.40 -3.59 16 24 C 0.19 2.04 11.30 -17.23 -0.19 1.84 16 25 N -0.57 -7.93 9.20 -13.93 -0.13 -8.06 16 26 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.09 0.72 8.07 -51.93 -0.42 0.30 16 30 H 0.09 1.15 7.42 -51.93 -0.39 0.76 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.84 6.44 -51.93 -0.33 0.51 16 33 H 0.07 0.56 8.07 -51.93 -0.42 0.14 16 34 H 0.09 1.74 7.40 -51.92 -0.38 1.35 16 35 H 0.09 1.70 8.11 -51.92 -0.42 1.28 16 36 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.43 7.76 5.94 -40.82 -0.24 7.52 16 38 H 0.16 1.67 8.06 -52.49 -0.42 1.24 16 39 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 352.32 15.07 5.31 5.31 Total: -1.00 -35.84 352.32 -10.11 -45.95 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -5.50 Total: 6.52 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -2.46 Total: 3.89 kcal Atomic # 7 Polarization: -63.04 SS G_CDS: -0.30 Total: -63.34 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.07 Total: -11.16 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.84 -10.11 -45.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115630335.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.305 kcal (2) G-P(sol) polarization free energy of solvation -35.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds