Wall clock time and date at job start Fri Apr 10 2020 14:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.47040 * 2 1 4 4 C 1.52996 * 109.47015 * 120.00015 * 2 1 3 5 5 N 1.46504 * 109.46960 * 175.00160 * 4 2 1 6 6 C 1.46496 * 120.00083 * 90.00343 * 5 4 2 7 7 C 1.34781 * 119.99780 * 269.99820 * 5 4 2 8 8 O 1.21272 * 120.00057 * 0.02562 * 7 5 4 9 9 C 1.50697 * 119.99675 * 179.97438 * 7 5 4 10 10 S 1.81001 * 109.47060 * 180.02562 * 9 7 5 11 11 C 1.76198 * 99.99993 * 180.02562 * 10 9 7 12 12 H 1.07998 * 120.00082 * 359.97438 * 11 10 9 13 13 C 1.38798 * 119.99835 * 180.02562 * 11 10 9 14 14 N 1.31628 * 120.00346 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00083 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47039 * 89.99742 * 15 13 11 17 17 H 1.48499 * 109.47410 * 210.00318 * 15 13 11 18 18 H 1.48505 * 109.46960 * 330.00058 * 15 13 11 19 19 N 1.46504 * 109.47200 * 240.00348 * 2 1 3 20 20 C 1.38405 * 119.99875 * 84.99836 * 19 2 1 21 21 N 1.32494 * 119.21344 * 179.97438 * 20 19 2 22 22 C 1.32279 * 120.73978 * 179.97438 * 21 20 19 23 23 C 1.38606 * 119.19607 * 0.02562 * 22 21 20 24 24 C 1.38603 * 118.55867 * 0.27683 * 23 22 21 25 25 N 1.32278 * 119.19545 * 359.43570 * 24 23 22 26 26 H 1.09009 * 109.46873 * 60.00063 * 1 2 3 27 27 H 1.08996 * 109.46661 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47359 * 300.00158 * 1 2 3 29 29 H 1.09004 * 109.47419 * 295.00207 * 4 2 1 30 30 H 1.08996 * 109.46888 * 55.00286 * 4 2 1 31 31 H 1.08996 * 109.47394 * 89.99456 * 6 5 4 32 32 H 1.09003 * 109.47203 * 210.00189 * 6 5 4 33 33 H 1.08998 * 109.46849 * 329.99756 * 6 5 4 34 34 H 1.08996 * 109.47434 * 300.00198 * 9 7 5 35 35 H 1.09001 * 109.47038 * 60.00311 * 9 7 5 36 36 H 0.97005 * 120.00254 * 179.97438 * 14 13 11 37 37 H 0.96996 * 119.99600 * 264.99713 * 19 2 1 38 38 H 1.08002 * 120.39784 * 180.02562 * 22 21 20 39 39 H 1.08002 * 120.71685 * 179.97438 * 23 22 21 40 40 H 1.07998 * 120.39901 * 179.72769 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1905 6 6 4.3343 0.2340 1.7613 7 6 4.0758 -1.8987 0.6115 8 8 3.3852 -2.7763 0.1387 9 6 5.5777 -2.0065 0.5507 10 16 6.0388 -3.5465 -0.2811 11 6 7.7947 -3.4169 -0.2134 12 1 8.2552 -2.5568 0.2497 13 6 8.5860 -4.4197 -0.7562 14 7 8.0247 -5.4678 -1.3211 15 14 10.4476 -4.2820 -0.6852 16 1 10.9430 -4.9107 0.5657 17 1 11.0404 -4.9760 -1.8565 18 1 10.8392 -2.8497 -0.7081 19 7 2.0184 -0.6905 -1.1962 20 6 2.1506 0.0000 -2.3884 21 7 2.5942 -0.6397 -3.4605 22 6 2.7316 -0.0094 -4.6153 23 6 2.4057 1.3354 -4.6945 24 6 1.9507 1.9754 -3.5524 25 7 1.8309 1.2851 -2.4304 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.7516 -0.1583 2.1370 30 1 1.6054 -1.7198 1.2950 31 1 4.5424 0.0093 2.8073 32 1 5.2722 0.2953 1.2092 33 1 3.8090 1.1866 1.6919 34 1 5.9806 -1.1594 -0.0045 35 1 5.9834 -2.0039 1.5624 36 1 8.5778 -6.1685 -1.7009 37 1 2.2491 -1.6317 -1.1527 38 1 3.0933 -0.5364 -5.4859 39 1 2.5089 1.8742 -5.6249 40 1 1.6926 3.0237 -3.5794 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115630335.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:35:49 Heat of formation + Delta-G solvation = 3.208722 kcal Electronic energy + Delta-G solvation = -23371.362276 eV Core-core repulsion = 19926.138402 eV Total energy + Delta-G solvation = -3445.223874 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.120 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.81519 -40.97743 -37.98503 -36.20267 -34.60526 -34.51264 -33.31883 -31.09213 -30.24764 -28.26507 -27.71378 -26.43961 -25.44480 -24.33995 -22.14811 -20.68464 -19.65639 -19.16287 -18.34768 -17.98895 -17.12776 -17.02405 -16.89705 -16.46891 -16.04610 -15.96031 -15.65411 -15.32342 -14.64202 -14.58534 -14.52180 -14.20662 -13.83343 -13.77036 -13.52154 -13.33805 -13.18213 -12.96011 -12.90724 -12.73685 -12.59754 -12.20269 -11.77284 -11.75764 -11.73108 -11.33832 -11.15984 -10.91580 -10.28651 -9.99217 -9.71419 -8.96881 -8.67613 -8.36257 -6.14153 0.32067 0.36780 1.23836 1.40258 1.43556 1.51593 1.54913 1.97510 2.17405 2.25867 2.97623 3.04432 3.24857 3.38438 3.70307 3.77814 3.86185 3.96016 4.13247 4.18276 4.23375 4.36965 4.43037 4.44554 4.47015 4.55732 4.63885 4.77173 4.84746 4.89598 4.97261 5.00965 5.27045 5.38736 5.50296 5.52832 5.98326 6.16926 6.18310 6.26798 6.57842 7.04632 7.11807 7.45740 8.72961 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.014161 B = 0.003992 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.731078 B = 7011.984341 C = 8173.832189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.143 3.857 3 H 0.093 0.907 4 C 0.105 3.895 5 N -0.608 5.608 6 C 0.072 3.928 7 C 0.536 3.464 8 O -0.558 6.558 9 C -0.124 4.124 10 S -0.143 6.143 11 C -0.549 4.549 12 H 0.079 0.921 13 C 0.015 3.985 14 N -0.910 5.910 15 Si 0.998 3.002 16 H -0.266 1.266 17 H -0.276 1.276 18 H -0.260 1.260 19 N -0.699 5.699 20 C 0.545 3.455 21 N -0.616 5.616 22 C 0.171 3.829 23 C -0.288 4.288 24 C 0.180 3.820 25 N -0.578 5.578 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.098 0.902 29 H 0.139 0.861 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.271 0.729 37 H 0.409 0.591 38 H 0.181 0.819 39 H 0.178 0.822 40 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.142 20.532 2.147 24.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.037 3.963 3 H 0.111 0.889 4 C -0.018 4.018 5 N -0.341 5.341 6 C -0.069 4.069 7 C 0.324 3.676 8 O -0.436 6.436 9 C -0.275 4.275 10 S 0.084 5.916 11 C -0.697 4.697 12 H 0.097 0.903 13 C -0.189 4.189 14 N -0.547 5.547 15 Si 0.819 3.181 16 H -0.191 1.191 17 H -0.202 1.202 18 H -0.184 1.184 19 N -0.339 5.339 20 C 0.188 3.812 21 N -0.340 5.340 22 C 0.004 3.996 23 C -0.313 4.313 24 C 0.013 3.987 25 N -0.302 5.302 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.117 0.883 29 H 0.157 0.843 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.119 0.881 34 H 0.111 0.889 35 H 0.123 0.877 36 H 0.080 0.920 37 H 0.249 0.751 38 H 0.198 0.802 39 H 0.195 0.805 40 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -14.306 18.679 2.462 23.657 hybrid contribution 2.093 0.473 -0.591 2.226 sum -12.213 19.152 1.872 22.792 Atomic orbital electron populations 1.22065 0.93566 1.01992 1.03317 1.21543 0.95008 0.97150 0.82595 0.88856 1.22077 0.78634 1.02582 0.98511 1.47802 1.07418 1.20868 1.58057 1.22068 0.95280 0.90338 0.99257 1.20016 0.89252 0.81510 0.76868 1.90600 1.64702 1.40898 1.47418 1.23342 0.95654 1.03288 1.05218 1.85538 1.06543 1.23598 1.75871 1.23187 0.91369 1.10265 1.44874 0.90287 1.26108 1.05345 0.93820 0.93667 1.70183 1.38113 1.09638 1.36719 0.84974 0.75825 0.79013 0.78291 1.19073 1.20153 1.18363 1.44910 1.69778 1.13265 1.05945 1.19654 0.88117 0.86461 0.87007 1.67967 1.22521 1.42205 1.01265 1.23452 0.89164 0.93081 0.93864 1.22843 1.08873 0.96613 1.02966 1.23659 0.87845 1.00891 0.86324 1.67987 1.24865 1.06305 1.31063 0.93209 0.93304 0.88313 0.84277 0.90861 0.90349 0.91907 0.88138 0.88871 0.87663 0.91958 0.75080 0.80221 0.80472 0.77922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.50 71.98 0.68 -2.07 16 2 C 0.14 3.20 2.87 44.99 0.13 3.32 16 3 H 0.09 2.00 7.50 -2.38 -0.02 1.99 16 4 C 0.10 2.17 5.14 86.38 0.44 2.62 16 5 N -0.61 -15.89 2.77 -846.78 -2.35 -18.24 16 6 C 0.07 1.30 10.24 127.77 1.31 2.61 16 7 C 0.54 20.36 6.99 87.66 0.61 20.98 16 8 O -0.56 -25.42 13.18 -3.01 -0.04 -25.46 16 9 C -0.12 -5.21 4.71 71.23 0.34 -4.87 16 10 S -0.14 -8.16 20.57 -56.49 -1.16 -9.33 16 11 C -0.55 -32.22 9.50 67.95 0.65 -31.57 16 12 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 13 C 0.02 0.90 5.49 84.86 0.47 1.37 16 14 N -0.91 -56.90 13.22 21.65 0.29 -56.61 16 15 Si 1.00 44.37 29.55 68.60 2.03 46.39 16 16 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 17 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 18 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 19 N -0.70 -22.38 4.62 -330.42 -1.53 -23.91 16 20 C 0.54 17.89 8.40 261.49 2.20 20.09 16 21 N -0.62 -21.86 10.46 -197.98 -2.07 -23.93 16 22 C 0.17 4.47 11.30 84.71 0.96 5.43 16 23 C -0.29 -5.41 10.16 22.44 0.23 -5.18 16 24 C 0.18 3.49 11.30 84.71 0.96 4.45 16 25 N -0.58 -15.33 9.20 -197.99 -1.82 -17.15 16 26 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 27 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.14 1.59 8.07 -2.39 -0.02 1.57 16 30 H 0.07 1.83 7.42 -2.39 -0.02 1.81 16 31 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.06 1.30 6.44 -2.39 -0.02 1.28 16 33 H 0.10 1.21 8.07 -2.39 -0.02 1.19 16 34 H 0.09 3.76 7.40 -2.40 -0.02 3.74 16 35 H 0.11 4.01 8.11 -2.39 -0.02 3.99 16 36 H 0.27 15.72 8.31 -92.70 -0.77 14.94 16 37 H 0.41 15.87 5.94 -92.71 -0.55 15.32 16 38 H 0.18 3.73 8.06 -2.91 -0.02 3.70 16 39 H 0.18 1.87 8.06 -2.91 -0.02 1.85 16 40 H 0.20 2.04 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -83.91 352.32 2.81 -81.10 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: 0.50 Total: 29.96 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: 8.97 Total: 17.16 kcal Atomic # 7 Polarization: -132.35 SS G_CDS: -7.48 Total: -139.84 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.04 Total: -25.46 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 16 Polarization: -8.16 SS G_CDS: -1.16 Total: -9.33 kcal Total: -83.91 2.81 -81.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115630335.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.309 kcal (2) G-P(sol) polarization free energy of solvation -83.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds