Wall clock time and date at job start Fri Apr 10 2020 14:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09007 * 109.45651 * 2 1 4 4 C 1.53041 * 109.45166 * 240.03268 * 2 1 3 5 5 C 1.53620 * 109.24170 * 178.49617 * 4 2 1 6 6 N 1.46922 * 108.54511 * 54.85312 * 5 4 2 7 7 C 1.34781 * 120.63218 * 126.36720 * 6 5 4 8 8 O 1.21599 * 120.00140 * 187.68359 * 7 6 5 9 9 C 1.47448 * 119.99561 * 7.67925 * 7 6 5 10 10 C 1.37986 * 124.15117 * 187.71929 * 9 7 6 11 11 S 1.72105 * 104.03267 * 180.02562 * 10 9 7 12 12 N 1.56410 * 96.15143 * 0.02562 * 11 10 9 13 13 N 1.27414 * 109.87649 * 0.02562 * 12 11 10 14 14 C 1.46928 * 118.73974 * 306.09443 * 6 5 4 15 15 C 1.53044 * 109.46083 * 119.96695 * 2 1 3 16 16 H 1.08996 * 109.49474 * 61.42294 * 15 2 1 17 17 C 1.53000 * 109.52271 * 301.34166 * 15 2 1 18 18 N 1.46501 * 109.47152 * 175.14701 * 17 15 2 19 19 C 1.36929 * 120.00278 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00055 * 359.97438 * 19 18 17 21 21 C 1.38814 * 120.00265 * 179.97438 * 19 18 17 22 22 N 1.31613 * 120.00216 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 119.99679 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.46953 * 90.00334 * 23 21 19 25 25 H 1.48503 * 109.46937 * 209.99862 * 23 21 19 26 26 H 1.48495 * 109.47074 * 329.99932 * 23 21 19 27 27 H 1.09000 * 109.47074 * 300.03040 * 1 2 3 28 28 H 1.08996 * 109.47130 * 60.03172 * 1 2 3 29 29 H 1.09002 * 109.46418 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.49410 * 298.57085 * 4 2 1 31 31 H 1.08993 * 109.49607 * 58.63314 * 4 2 1 32 32 H 1.08997 * 109.74137 * 295.11674 * 5 4 2 33 33 H 1.09004 * 109.66398 * 174.54564 * 5 4 2 34 34 H 1.07997 * 127.98761 * 359.74600 * 10 9 7 35 35 H 1.09007 * 109.58856 * 173.64345 * 14 6 5 36 36 H 1.08995 * 109.58684 * 294.07289 * 14 6 5 37 37 H 1.09002 * 109.47419 * 295.14287 * 17 15 2 38 38 H 1.09000 * 109.47030 * 55.14428 * 17 15 2 39 39 H 0.97000 * 119.99881 * 359.97438 * 18 17 15 40 40 H 0.97005 * 120.00358 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0397 -0.7208 -1.2501 5 6 3.5754 -0.6851 -1.2644 6 7 4.0677 -1.2491 -0.0002 7 6 4.9618 -2.2577 -0.0002 8 8 5.2563 -2.8092 1.0427 9 6 5.5828 -2.6922 -1.2650 10 6 6.3870 -3.8065 -1.3903 11 16 6.8205 -3.8231 -3.0558 12 7 6.0269 -2.5337 -3.4484 13 7 5.4385 -2.0582 -2.4231 14 6 3.5715 -0.6888 1.2641 15 6 2.0399 -0.7208 1.2501 16 1 1.6977 -1.7556 1.2384 17 6 1.5031 -0.0194 2.4994 18 7 1.8953 -0.7762 3.6909 19 6 1.5246 -0.3371 4.9338 20 1 0.9434 0.5674 5.0358 21 6 1.8959 -1.0545 6.0627 22 7 1.5400 -0.6321 7.2573 23 14 2.9006 -2.6194 5.8862 24 1 4.3472 -2.2861 5.9267 25 1 2.5746 -3.5452 7.0007 26 1 2.5787 -3.2709 4.5912 27 1 -0.3633 0.5143 0.8897 28 1 -0.3633 0.5133 -0.8902 29 1 -0.3632 -1.0277 0.0005 30 1 1.6975 -1.7556 -1.2383 31 1 1.6566 -0.2211 -2.1398 32 1 3.9188 0.3446 -1.3634 33 1 3.9484 -1.2787 -2.0991 34 1 6.6808 -4.5042 -0.6202 35 1 3.9417 -1.2848 2.0983 36 1 3.9145 0.3407 1.3671 37 1 1.9161 0.9877 2.5565 38 1 0.4158 0.0362 2.4459 39 1 2.4171 -1.5888 3.5993 40 1 1.7991 -1.1336 8.0462 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133011815.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:31:07 Heat of formation + Delta-G solvation = 61.447906 kcal Electronic energy + Delta-G solvation = -23855.002445 eV Core-core repulsion = 20412.304011 eV Total energy + Delta-G solvation = -3442.698433 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.59153 -39.87874 -38.05672 -35.16278 -33.82271 -32.53730 -31.85669 -30.23597 -28.49565 -27.60811 -25.90937 -24.29775 -22.94691 -22.46897 -21.12300 -20.81797 -19.88548 -18.71552 -17.51588 -16.71581 -16.51460 -16.21622 -15.68728 -15.07894 -14.85872 -14.33478 -14.24975 -14.04371 -13.54903 -13.52637 -13.22664 -12.88101 -12.61664 -12.56087 -12.43146 -11.92544 -11.77619 -11.66707 -11.25105 -11.06162 -10.85133 -10.72700 -10.51602 -10.45588 -10.34785 -10.31312 -10.15906 -10.05850 -9.71418 -9.51591 -8.84944 -8.64132 -7.17279 -5.71995 -3.07218 -0.32671 0.52547 1.09831 1.12691 2.81856 2.91657 3.45581 3.46749 3.50957 3.53581 4.29713 4.40313 4.65860 4.74665 4.86507 4.87278 4.90394 5.10510 5.31652 5.51152 5.55984 5.58082 5.64958 5.72006 5.79337 5.86856 5.95620 5.96979 6.02875 6.13239 6.27786 6.34601 6.41486 6.50641 6.73805 6.80085 7.05250 7.29380 7.92686 8.04043 8.47060 9.26396 9.99281 10.18711 11.46343 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.016435 B = 0.004044 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.323055 B = 6921.619210 C = 8391.487189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 H 0.074 0.926 4 C -0.127 4.127 5 C 0.081 3.919 6 N -0.589 5.589 7 C 0.596 3.404 8 O -0.521 6.521 9 C -0.015 4.015 10 C -0.236 4.236 11 S 0.463 5.537 12 N -0.296 5.296 13 N -0.208 5.208 14 C 0.118 3.882 15 C -0.106 4.106 16 H 0.074 0.926 17 C 0.163 3.837 18 N -0.757 5.757 19 C -0.243 4.243 20 H 0.090 0.910 21 C 0.006 3.994 22 N -0.935 5.935 23 Si 0.881 3.119 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.276 1.276 27 H 0.066 0.934 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.127 0.873 34 H 0.209 0.791 35 H 0.098 0.902 36 H 0.075 0.925 37 H 0.028 0.972 38 H 0.036 0.964 39 H 0.361 0.639 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.730 -5.063 -26.071 27.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.104 4.104 3 H 0.092 0.908 4 C -0.165 4.165 5 C -0.042 4.042 6 N -0.321 5.321 7 C 0.378 3.622 8 O -0.396 6.396 9 C -0.162 4.162 10 C -0.393 4.393 11 S 0.599 5.401 12 N -0.276 5.276 13 N -0.078 5.078 14 C -0.004 4.004 15 C -0.125 4.125 16 H 0.093 0.907 17 C 0.035 3.965 18 N -0.403 5.403 19 C -0.373 4.373 20 H 0.108 0.892 21 C -0.190 4.190 22 N -0.583 5.583 23 Si 0.711 3.289 24 H -0.209 1.209 25 H -0.218 1.218 26 H -0.202 1.202 27 H 0.085 0.915 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.143 0.857 34 H 0.226 0.774 35 H 0.116 0.884 36 H 0.094 0.906 37 H 0.046 0.954 38 H 0.054 0.946 39 H 0.194 0.806 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.009 -4.836 -27.190 29.049 hybrid contribution 0.324 -1.163 1.617 2.018 sum 9.333 -5.999 -25.573 27.876 Atomic orbital electron populations 1.21889 0.94826 1.01951 1.01896 1.21112 0.96082 0.99502 0.93720 0.90791 1.22067 0.94819 1.01290 0.98368 1.22731 0.94274 1.00601 0.86614 1.48004 1.41352 1.33807 1.08890 1.16776 0.79707 0.80307 0.85367 1.90884 1.62802 1.54759 1.31149 1.22810 1.02834 0.95582 0.94946 1.28924 1.02053 1.02638 1.05672 1.81519 1.38900 1.23013 0.96683 1.78681 1.14136 1.11033 1.23757 1.71542 1.16056 1.25052 0.95121 1.21863 0.94206 0.99379 0.84934 1.21773 0.94099 1.00959 0.95689 0.90743 1.20714 0.97458 0.94118 0.84192 1.42783 1.66188 1.28750 1.02588 1.19044 1.28519 1.07924 0.81838 0.89203 1.24646 1.00604 0.98635 0.95108 1.69702 1.50918 1.40686 0.97011 0.86599 0.80833 0.84495 0.76972 1.20901 1.21763 1.20234 0.91499 0.93070 0.92841 0.91803 0.90660 0.91134 0.85653 0.77368 0.88365 0.90628 0.95377 0.94582 0.80550 0.93106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.81 37.16 0.33 -1.39 16 2 C -0.09 -1.03 2.23 -90.57 -0.20 -1.23 16 3 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 4 C -0.13 -1.35 5.38 -26.39 -0.14 -1.49 16 5 C 0.08 0.92 6.05 -3.49 -0.02 0.90 16 6 N -0.59 -8.33 2.97 -173.76 -0.52 -8.85 16 7 C 0.60 8.97 7.66 -12.51 -0.10 8.87 16 8 O -0.52 -9.58 16.24 5.28 0.09 -9.49 16 9 C -0.02 -0.18 6.62 -83.78 -0.55 -0.73 16 10 C -0.24 -2.02 11.22 30.64 0.34 -1.67 16 11 S 0.46 2.85 23.38 -107.50 -2.51 0.34 16 12 N -0.30 -2.88 12.49 60.35 0.75 -2.13 16 13 N -0.21 -2.33 7.95 32.74 0.26 -2.07 16 14 C 0.12 1.88 5.53 -3.71 -0.02 1.86 16 15 C -0.11 -1.65 1.92 -90.50 -0.17 -1.82 16 16 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 17 C 0.16 3.12 5.41 -4.04 -0.02 3.10 16 18 N -0.76 -18.43 5.18 -59.91 -0.31 -18.74 16 19 C -0.24 -7.04 10.47 -15.06 -0.16 -7.20 16 20 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 21 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 22 N -0.94 -30.00 13.97 55.49 0.78 -29.23 16 23 Si 0.88 23.22 27.74 -169.99 -4.71 18.51 16 24 H -0.28 -7.45 7.11 56.52 0.40 -7.05 16 25 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 26 H -0.28 -7.02 6.52 56.52 0.37 -6.65 16 27 H 0.07 0.85 6.30 -51.93 -0.33 0.52 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.13 1.41 4.13 -91.15 -0.38 1.03 16 34 H 0.21 1.43 8.06 -52.49 -0.42 1.00 16 35 H 0.10 1.87 6.20 -51.92 -0.32 1.55 16 36 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.04 0.70 6.15 -51.93 -0.32 0.38 16 39 H 0.36 8.84 4.75 -40.82 -0.19 8.65 16 40 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 LS Contribution 332.67 15.07 5.01 5.01 Total: -1.00 -34.75 332.67 -7.34 -42.08 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -5.36 Total: 5.31 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -0.81 Total: -0.74 kcal Atomic # 7 Polarization: -61.98 SS G_CDS: 0.96 Total: -61.02 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -4.71 Total: 18.51 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -2.51 Total: 0.34 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.75 -7.34 -42.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133011815.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.531 kcal (2) G-P(sol) polarization free energy of solvation -34.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds