Wall clock time and date at job start Fri Apr 10 2020 14:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46008 * 2 1 4 4 C 1.53047 * 109.44665 * 119.96056 * 2 1 3 5 5 C 1.52765 * 109.38046 * 181.25109 * 4 2 1 6 6 N 1.46922 * 109.01234 * 305.59500 * 5 4 2 7 7 C 1.34775 * 120.62794 * 233.58648 * 6 5 4 8 8 O 1.21603 * 120.00107 * 182.82450 * 7 6 5 9 9 C 1.47450 * 120.00351 * 2.81681 * 7 6 5 10 10 C 1.37974 * 124.15562 * 172.54419 * 9 7 6 11 11 S 1.72108 * 104.02987 * 180.02562 * 10 9 7 12 12 N 1.56393 * 96.15609 * 0.02562 * 11 10 9 13 13 N 1.27419 * 109.87899 * 359.97438 * 12 11 10 14 14 C 1.46928 * 118.74065 * 53.30602 * 6 5 4 15 15 C 1.53041 * 109.46088 * 240.02207 * 2 1 3 16 16 H 1.08992 * 109.49707 * 298.58301 * 15 2 1 17 17 C 1.53003 * 109.51759 * 58.66484 * 15 2 1 18 18 N 1.46500 * 109.46542 * 184.85209 * 17 15 2 19 19 C 1.36936 * 120.00157 * 179.97438 * 18 17 15 20 20 H 1.07995 * 120.00047 * 0.02562 * 19 18 17 21 21 C 1.38816 * 120.00293 * 179.97438 * 19 18 17 22 22 N 1.31621 * 120.00007 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00041 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47312 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47482 * 120.00017 * 23 21 19 26 26 H 1.48500 * 109.47239 * 240.00229 * 23 21 19 27 27 H 1.09003 * 109.47574 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47179 * 299.97486 * 1 2 3 29 29 H 1.08996 * 109.47491 * 59.97451 * 1 2 3 30 30 H 1.08996 * 109.49895 * 301.33075 * 4 2 1 31 31 H 1.09000 * 109.49696 * 61.39952 * 4 2 1 32 32 H 1.08997 * 109.50513 * 185.70518 * 5 4 2 33 33 H 1.09005 * 109.42954 * 65.42914 * 5 4 2 34 34 H 1.07996 * 127.98894 * 359.97438 * 10 9 7 35 35 H 1.08996 * 109.58398 * 66.43332 * 14 6 5 36 36 H 1.09000 * 109.58818 * 186.86007 * 14 6 5 37 37 H 1.08998 * 109.47101 * 304.84648 * 17 15 2 38 38 H 1.08999 * 109.47668 * 64.85688 * 17 15 2 39 39 H 0.97010 * 120.00448 * 0.02562 * 18 17 15 40 40 H 0.96991 * 119.99756 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0395 -0.7207 1.2503 5 6 3.5668 -0.6926 1.2646 6 7 4.0676 -1.2492 0.0005 7 6 4.9609 -2.2584 0.0007 8 8 5.4067 -2.6761 -1.0508 9 6 5.3979 -2.8560 1.2759 10 6 6.1895 -3.9820 1.3727 11 16 6.3763 -4.2162 3.0675 12 7 5.5167 -2.9844 3.5028 13 7 5.0771 -2.3770 2.4726 14 6 3.5714 -0.6890 -1.2639 15 6 2.0398 -0.7210 -1.2499 16 1 1.6976 -1.7557 -1.2381 17 6 1.5030 -0.0197 -2.4993 18 7 1.8953 -0.7767 -3.6907 19 6 1.5247 -0.3377 -4.9337 20 1 0.9436 0.5668 -5.0358 21 6 1.8968 -1.0547 -6.0625 22 7 2.6055 -2.1569 -5.9382 23 14 1.3918 -0.4554 -7.7582 24 1 0.6055 0.7975 -7.6265 25 1 2.6056 -0.1953 -8.5731 26 1 0.5622 -1.4923 -8.4229 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5135 0.8902 29 1 -0.3634 0.5142 -0.8897 30 1 1.6569 -0.2205 2.1399 31 1 1.6968 -1.7554 1.2389 32 1 3.9340 -1.2910 2.0984 33 1 3.9096 0.3366 1.3719 34 1 6.5970 -4.5791 0.5703 35 1 3.9145 0.3404 -1.3670 36 1 3.9417 -1.2851 -2.0980 37 1 0.4158 0.0359 -2.4459 38 1 1.9161 0.9874 -2.5566 39 1 2.4170 -1.5894 -3.5990 40 1 2.8659 -2.6576 -6.7270 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133011816.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:31:12 Heat of formation + Delta-G solvation = 60.468213 kcal Electronic energy + Delta-G solvation = -23763.677999 eV Core-core repulsion = 20320.937083 eV Total energy + Delta-G solvation = -3442.740916 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.120 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.51539 -39.73358 -37.91903 -34.97047 -33.68715 -32.44424 -31.77762 -29.81787 -28.38377 -27.50293 -25.61699 -24.19886 -23.13323 -22.34739 -21.18024 -20.71776 -19.68745 -18.61352 -17.05445 -16.63516 -16.35047 -16.11185 -15.56808 -14.91891 -14.80538 -14.30470 -14.18883 -13.83817 -13.59034 -13.39169 -13.09962 -12.80406 -12.49744 -12.44859 -12.33966 -11.79261 -11.66723 -11.47598 -10.95788 -10.94336 -10.75592 -10.66792 -10.38054 -10.35887 -10.24875 -10.15531 -10.12458 -9.96031 -9.62868 -9.45234 -8.82253 -8.49697 -6.84812 -5.69115 -2.98376 -0.23856 0.61063 1.19195 1.20293 2.95221 3.08743 3.47583 3.52712 3.54465 3.55320 4.40140 4.49995 4.63564 4.90532 4.99320 5.01345 5.02509 5.25548 5.45080 5.63900 5.67849 5.73827 5.77284 5.85590 5.99422 6.04953 6.09425 6.14839 6.21751 6.28720 6.38178 6.51619 6.58741 6.68257 6.84891 6.93561 7.15298 7.45737 7.76256 8.09358 8.48847 9.59900 10.18172 10.52383 11.53401 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.018471 B = 0.003525 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.520466 B = 7941.059388 C = 9217.396803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 H 0.071 0.929 4 C -0.125 4.125 5 C 0.061 3.939 6 N -0.587 5.587 7 C 0.593 3.407 8 O -0.516 6.516 9 C -0.011 4.011 10 C -0.235 4.235 11 S 0.464 5.536 12 N -0.298 5.298 13 N -0.209 5.209 14 C 0.119 3.881 15 C -0.101 4.101 16 H 0.074 0.926 17 C 0.159 3.841 18 N -0.733 5.733 19 C -0.240 4.240 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.930 5.930 23 Si 0.905 3.095 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.145 0.855 33 H 0.065 0.935 34 H 0.210 0.790 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.028 0.972 38 H 0.019 0.981 39 H 0.384 0.616 40 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.914 -2.437 22.785 23.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 H 0.089 0.911 4 C -0.163 4.163 5 C -0.063 4.063 6 N -0.318 5.318 7 C 0.375 3.625 8 O -0.391 6.391 9 C -0.158 4.158 10 C -0.392 4.392 11 S 0.600 5.400 12 N -0.278 5.278 13 N -0.078 5.078 14 C -0.002 4.002 15 C -0.120 4.120 16 H 0.092 0.908 17 C 0.031 3.969 18 N -0.378 5.378 19 C -0.371 4.371 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.578 5.578 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.161 0.839 33 H 0.084 0.916 34 H 0.227 0.773 35 H 0.088 0.912 36 H 0.123 0.877 37 H 0.046 0.954 38 H 0.037 0.963 39 H 0.218 0.782 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.031 -2.430 23.994 24.860 hybrid contribution -0.309 0.233 -2.587 2.616 sum 5.722 -2.197 21.407 22.267 Atomic orbital electron populations 1.21878 0.95044 1.01882 1.01645 1.21133 0.95914 0.99424 0.94084 0.91072 1.21871 0.95067 1.01185 0.98163 1.22943 0.94680 1.00869 0.87760 1.48006 1.41329 1.33577 1.08868 1.16787 0.80185 0.80084 0.85423 1.90910 1.55962 1.61716 1.30508 1.22883 1.01882 0.96891 0.94115 1.28916 1.03033 1.01405 1.05881 1.81478 1.38343 1.26121 0.94071 1.78665 1.15592 1.09178 1.24345 1.71272 1.18201 1.23601 0.94764 1.21857 0.93940 0.99367 0.85065 1.21713 0.94181 1.00820 0.95329 0.90798 1.20728 0.96875 0.94060 0.85263 1.42431 1.65285 1.29252 1.00833 1.19251 1.27684 1.06372 0.83774 0.91190 1.24748 1.00879 0.97557 0.97785 1.69683 1.42402 1.17407 1.28355 0.86143 0.77615 0.77707 0.84874 1.20608 1.21903 1.21949 0.92855 0.93227 0.91695 0.90867 0.91913 0.83917 0.91637 0.77281 0.91152 0.87680 0.95432 0.96311 0.78162 0.93583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 8.81 37.16 0.33 -1.50 16 2 C -0.09 -1.14 2.23 -90.58 -0.20 -1.34 16 3 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 4 C -0.12 -1.46 5.35 -26.83 -0.14 -1.60 16 5 C 0.06 0.76 6.24 -3.93 -0.02 0.73 16 6 N -0.59 -8.95 2.98 -174.29 -0.52 -9.47 16 7 C 0.59 9.55 7.68 -12.51 -0.10 9.46 16 8 O -0.52 -10.13 16.23 5.27 0.09 -10.05 16 9 C -0.01 -0.14 6.69 -83.78 -0.56 -0.71 16 10 C -0.24 -2.18 11.22 30.64 0.34 -1.84 16 11 S 0.46 3.10 23.38 -107.50 -2.51 0.59 16 12 N -0.30 -3.05 12.49 60.35 0.75 -2.30 16 13 N -0.21 -2.48 7.79 32.74 0.26 -2.23 16 14 C 0.12 2.07 5.51 -3.71 -0.02 2.04 16 15 C -0.10 -1.69 1.92 -90.50 -0.17 -1.87 16 16 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 17 C 0.16 3.21 5.41 -4.04 -0.02 3.19 16 18 N -0.73 -18.98 5.38 -59.91 -0.32 -19.30 16 19 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 20 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 21 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 22 N -0.93 -28.97 13.06 55.49 0.72 -28.25 16 23 Si 0.91 22.88 29.55 -169.99 -5.02 17.86 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 26 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.87 6.30 -51.93 -0.33 0.54 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.14 1.74 3.58 -146.15 -0.52 1.22 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.21 1.59 8.06 -52.49 -0.42 1.17 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.10 2.21 6.22 -51.93 -0.32 1.89 16 37 H 0.03 0.56 6.15 -51.93 -0.32 0.24 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.38 10.63 6.89 -40.82 -0.28 10.35 16 40 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 335.34 15.07 5.05 5.05 Total: -1.00 -33.89 335.34 -7.87 -41.76 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -5.55 Total: 7.25 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -0.82 Total: -0.92 kcal Atomic # 7 Polarization: -62.44 SS G_CDS: 0.89 Total: -61.55 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.05 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Atomic # 16 Polarization: 3.10 SS G_CDS: -2.51 Total: 0.59 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.89 -7.87 -41.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133011816.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.229 kcal (2) G-P(sol) polarization free energy of solvation -33.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds