Wall clock time and date at job start Fri Apr 10 2020 14:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46008 * 2 1 4 4 C 1.53047 * 109.44665 * 119.96056 * 2 1 3 5 5 C 1.52765 * 109.38046 * 181.25109 * 4 2 1 6 6 N 1.46922 * 109.01234 * 305.59500 * 5 4 2 7 7 C 1.34775 * 120.62794 * 233.58648 * 6 5 4 8 8 O 1.21603 * 120.00107 * 182.82450 * 7 6 5 9 9 C 1.47450 * 120.00351 * 2.81681 * 7 6 5 10 10 C 1.37974 * 124.15562 * 172.54419 * 9 7 6 11 11 S 1.72108 * 104.02987 * 180.02562 * 10 9 7 12 12 N 1.56393 * 96.15609 * 0.02562 * 11 10 9 13 13 N 1.27419 * 109.87899 * 359.97438 * 12 11 10 14 14 C 1.46928 * 118.74065 * 53.30602 * 6 5 4 15 15 C 1.53041 * 109.46088 * 240.02207 * 2 1 3 16 16 H 1.08992 * 109.49707 * 298.58301 * 15 2 1 17 17 C 1.53003 * 109.51759 * 58.66484 * 15 2 1 18 18 N 1.46500 * 109.46542 * 184.85209 * 17 15 2 19 19 C 1.36936 * 120.00157 * 179.97438 * 18 17 15 20 20 H 1.07995 * 120.00047 * 0.02562 * 19 18 17 21 21 C 1.38816 * 120.00293 * 179.97438 * 19 18 17 22 22 N 1.31621 * 120.00007 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00041 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47312 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47482 * 120.00017 * 23 21 19 26 26 H 1.48500 * 109.47239 * 240.00229 * 23 21 19 27 27 H 1.09003 * 109.47574 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47179 * 299.97486 * 1 2 3 29 29 H 1.08996 * 109.47491 * 59.97451 * 1 2 3 30 30 H 1.08996 * 109.49895 * 301.33075 * 4 2 1 31 31 H 1.09000 * 109.49696 * 61.39952 * 4 2 1 32 32 H 1.08997 * 109.50513 * 185.70518 * 5 4 2 33 33 H 1.09005 * 109.42954 * 65.42914 * 5 4 2 34 34 H 1.07996 * 127.98894 * 359.97438 * 10 9 7 35 35 H 1.08996 * 109.58398 * 66.43332 * 14 6 5 36 36 H 1.09000 * 109.58818 * 186.86007 * 14 6 5 37 37 H 1.08998 * 109.47101 * 304.84648 * 17 15 2 38 38 H 1.08999 * 109.47668 * 64.85688 * 17 15 2 39 39 H 0.97010 * 120.00448 * 0.02562 * 18 17 15 40 40 H 0.96991 * 119.99756 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0395 -0.7207 1.2503 5 6 3.5668 -0.6926 1.2646 6 7 4.0676 -1.2492 0.0005 7 6 4.9609 -2.2584 0.0007 8 8 5.4067 -2.6761 -1.0508 9 6 5.3979 -2.8560 1.2759 10 6 6.1895 -3.9820 1.3727 11 16 6.3763 -4.2162 3.0675 12 7 5.5167 -2.9844 3.5028 13 7 5.0771 -2.3770 2.4726 14 6 3.5714 -0.6890 -1.2639 15 6 2.0398 -0.7210 -1.2499 16 1 1.6976 -1.7557 -1.2381 17 6 1.5030 -0.0197 -2.4993 18 7 1.8953 -0.7767 -3.6907 19 6 1.5247 -0.3377 -4.9337 20 1 0.9436 0.5668 -5.0358 21 6 1.8968 -1.0547 -6.0625 22 7 2.6055 -2.1569 -5.9382 23 14 1.3918 -0.4554 -7.7582 24 1 0.6055 0.7975 -7.6265 25 1 2.6056 -0.1953 -8.5731 26 1 0.5622 -1.4923 -8.4229 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5135 0.8902 29 1 -0.3634 0.5142 -0.8897 30 1 1.6569 -0.2205 2.1399 31 1 1.6968 -1.7554 1.2389 32 1 3.9340 -1.2910 2.0984 33 1 3.9096 0.3366 1.3719 34 1 6.5970 -4.5791 0.5703 35 1 3.9145 0.3404 -1.3670 36 1 3.9417 -1.2851 -2.0980 37 1 0.4158 0.0359 -2.4459 38 1 1.9161 0.9874 -2.5566 39 1 2.4170 -1.5894 -3.5990 40 1 2.8659 -2.6576 -6.7270 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133011816.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:31:11 Heat of formation + Delta-G solvation = 36.594501 kcal Electronic energy + Delta-G solvation = -23764.713241 eV Core-core repulsion = 20320.937083 eV Total energy + Delta-G solvation = -3443.776158 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.120 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.42918 -40.87729 -39.20985 -36.65301 -35.14779 -33.59153 -33.21087 -31.50775 -29.44776 -28.51216 -27.18899 -25.45589 -24.81613 -23.38541 -22.60414 -21.67712 -20.92692 -19.65411 -19.10756 -17.67014 -17.29827 -17.17267 -16.73795 -16.61474 -16.04237 -15.59249 -15.45407 -15.35151 -15.12254 -14.55622 -14.43442 -14.26926 -14.04272 -13.59920 -13.11868 -13.04166 -12.96302 -12.77921 -12.67568 -12.62432 -12.15219 -12.08918 -11.91057 -11.85029 -11.55167 -11.33312 -11.21531 -11.18037 -10.96052 -10.93748 -10.47132 -9.74586 -8.99090 -7.93898 -5.23959 -0.96508 -0.08833 0.24225 0.49020 1.45977 1.47730 1.57826 1.81461 1.95244 2.55898 2.62228 3.39211 3.48930 3.58526 3.69878 3.82658 3.87671 4.06944 4.18672 4.29650 4.31423 4.49565 4.59260 4.60098 4.73777 4.79624 4.92255 4.94638 5.05905 5.10631 5.14268 5.22682 5.27298 5.43423 5.49447 5.54713 5.57989 6.16923 6.27062 6.43416 6.89537 7.32565 8.08677 8.31209 9.29880 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.018471 B = 0.003525 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.520466 B = 7941.059388 C = 9217.396803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.080 4.080 3 H 0.083 0.917 4 C -0.117 4.117 5 C 0.058 3.942 6 N -0.586 5.586 7 C 0.586 3.414 8 O -0.568 6.568 9 C -0.037 4.037 10 C -0.246 4.246 11 S 0.589 5.411 12 N -0.329 5.329 13 N -0.223 5.223 14 C 0.126 3.874 15 C -0.087 4.087 16 H 0.052 0.948 17 C 0.158 3.842 18 N -0.748 5.748 19 C -0.244 4.244 20 H 0.079 0.921 21 C -0.079 4.079 22 N -0.971 5.971 23 Si 0.976 3.024 24 H -0.263 1.263 25 H -0.294 1.294 26 H -0.293 1.293 27 H 0.045 0.955 28 H 0.078 0.922 29 H 0.052 0.948 30 H 0.106 0.894 31 H 0.053 0.947 32 H 0.154 0.846 33 H 0.079 0.921 34 H 0.221 0.779 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.035 0.965 38 H 0.025 0.975 39 H 0.370 0.630 40 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.622 -1.824 25.414 26.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.099 4.099 3 H 0.102 0.898 4 C -0.155 4.155 5 C -0.065 4.065 6 N -0.316 5.316 7 C 0.371 3.629 8 O -0.446 6.446 9 C -0.184 4.184 10 C -0.403 4.403 11 S 0.725 5.275 12 N -0.309 5.309 13 N -0.091 5.091 14 C 0.003 3.997 15 C -0.107 4.107 16 H 0.070 0.930 17 C 0.032 3.968 18 N -0.390 5.390 19 C -0.376 4.376 20 H 0.097 0.903 21 C -0.271 4.271 22 N -0.622 5.622 23 Si 0.805 3.195 24 H -0.187 1.187 25 H -0.221 1.221 26 H -0.220 1.220 27 H 0.064 0.936 28 H 0.097 0.903 29 H 0.071 0.929 30 H 0.124 0.876 31 H 0.072 0.928 32 H 0.170 0.830 33 H 0.097 0.903 34 H 0.238 0.762 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.053 0.947 38 H 0.043 0.957 39 H 0.202 0.798 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 5.698 -1.762 26.688 27.347 hybrid contribution -0.130 -0.045 -3.238 3.241 sum 5.568 -1.807 23.450 24.170 Atomic orbital electron populations 1.21848 0.94103 1.01704 1.02462 1.21120 0.96598 0.99598 0.92579 0.89829 1.21849 0.94358 1.00835 0.98467 1.23210 0.95225 1.01610 0.86412 1.48092 1.41058 1.33449 1.09035 1.17284 0.79600 0.79729 0.86306 1.90870 1.57795 1.63268 1.32688 1.22411 1.04227 0.98540 0.93191 1.29255 1.01837 1.00438 1.08723 1.81075 1.34263 1.22051 0.90150 1.78297 1.17050 1.11228 1.24366 1.71227 1.19112 1.24370 0.94401 1.21546 0.94345 0.98684 0.85109 1.21554 0.93588 0.99688 0.95844 0.92989 1.20904 0.97247 0.93881 0.84800 1.42678 1.65121 1.29265 1.01976 1.19701 1.26666 1.06228 0.84956 0.90310 1.25633 1.01599 0.97997 1.01842 1.69868 1.44304 1.19008 1.29048 0.85038 0.77073 0.77675 0.79759 1.18700 1.22149 1.22039 0.93553 0.90344 0.92902 0.87572 0.92829 0.83012 0.90292 0.76221 0.90673 0.92248 0.94686 0.95749 0.79784 0.94126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.81 71.98 0.63 -2.66 16 2 C -0.08 -1.98 2.23 -10.77 -0.02 -2.01 16 3 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 4 C -0.12 -2.49 5.35 30.53 0.16 -2.33 16 5 C 0.06 1.36 6.24 86.22 0.54 1.90 16 6 N -0.59 -18.45 2.98 -823.58 -2.45 -20.90 16 7 C 0.59 19.83 7.68 86.67 0.67 20.50 16 8 O -0.57 -24.02 16.23 -4.04 -0.07 -24.09 16 9 C -0.04 -0.93 6.69 41.36 0.28 -0.65 16 10 C -0.25 -4.27 11.22 67.76 0.76 -3.51 16 11 S 0.59 6.05 23.38 -56.49 -1.32 4.73 16 12 N -0.33 -5.94 12.49 37.02 0.46 -5.48 16 13 N -0.22 -5.00 7.79 -50.35 -0.39 -5.39 16 14 C 0.13 4.60 5.51 86.36 0.48 5.08 16 15 C -0.09 -3.00 1.92 -10.71 -0.02 -3.02 16 16 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 17 C 0.16 6.51 5.41 86.38 0.47 6.98 16 18 N -0.75 -40.16 5.38 -343.45 -1.85 -42.01 16 19 C -0.24 -14.16 9.99 84.03 0.84 -13.32 16 20 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 21 C -0.08 -4.72 5.50 84.86 0.47 -4.26 16 22 N -0.97 -62.78 13.06 21.65 0.28 -62.50 16 23 Si 0.98 47.82 29.55 68.60 2.03 49.85 16 24 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 25 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 26 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 27 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.05 1.33 6.30 -2.39 -0.02 1.32 16 30 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.15 3.49 3.58 -124.17 -0.44 3.05 16 33 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.22 3.19 8.06 -2.91 -0.02 3.16 16 35 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.06 2.73 6.22 -2.39 -0.01 2.72 16 37 H 0.04 1.42 6.15 -2.39 -0.01 1.40 16 38 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.37 21.76 6.89 -92.70 -0.64 21.12 16 40 H 0.25 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -77.28 335.34 1.94 -75.34 By element: Atomic # 1 Polarization: 27.76 SS G_CDS: 0.00 Total: 27.76 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 5.24 Total: 2.70 kcal Atomic # 7 Polarization: -132.34 SS G_CDS: -3.95 Total: -136.29 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.07 Total: -24.09 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.03 Total: 49.85 kcal Atomic # 16 Polarization: 6.05 SS G_CDS: -1.32 Total: 4.73 kcal Total: -77.28 1.94 -75.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133011816.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.932 kcal (2) G-P(sol) polarization free energy of solvation -77.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds