Wall clock time and date at job start Fri Apr 10 2020 14:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.52002 * 2 1 4 4 C 1.53188 * 109.48841 * 239.91157 * 2 1 3 5 5 N 1.46934 * 108.76312 * 185.39981 * 4 2 1 6 6 C 1.34778 * 120.62947 * 233.63322 * 5 4 2 7 7 O 1.21623 * 119.99925 * 356.44100 * 6 5 4 8 8 C 1.47169 * 119.99847 * 176.43915 * 6 5 4 9 9 C 1.38249 * 128.47316 * 220.71629 * 8 6 5 10 10 N 1.31236 * 111.88461 * 180.02562 * 9 8 6 11 11 N 1.27334 * 120.04413 * 359.97438 * 10 9 8 12 12 S 1.56641 * 109.73715 * 359.70202 * 11 10 9 13 13 C 1.46928 * 118.73739 * 53.61687 * 5 4 2 14 14 C 1.53191 * 108.77405 * 306.38610 * 13 5 4 15 15 C 1.53042 * 109.31216 * 54.64235 * 14 13 5 16 16 H 1.09001 * 109.46514 * 58.63122 * 15 14 13 17 17 C 1.52998 * 109.46118 * 178.61382 * 15 14 13 18 18 N 1.46498 * 109.46987 * 295.02134 * 17 15 14 19 19 C 1.36933 * 120.00202 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00039 * 0.02562 * 19 18 17 21 21 C 1.38815 * 120.00240 * 179.97438 * 19 18 17 22 22 N 1.31619 * 119.99647 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00270 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47198 * 270.00454 * 23 21 19 25 25 H 1.48499 * 109.47199 * 29.99924 * 23 21 19 26 26 H 1.48491 * 109.47297 * 150.00377 * 23 21 19 27 27 H 1.08999 * 109.47273 * 299.92227 * 1 2 3 28 28 H 1.08998 * 109.46940 * 59.92070 * 1 2 3 29 29 H 1.08996 * 109.47150 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.58888 * 65.62099 * 4 2 1 31 31 H 1.08997 * 109.71388 * 305.25468 * 4 2 1 32 32 H 1.08001 * 124.05860 * 0.02562 * 9 8 6 33 33 H 1.08999 * 109.58412 * 186.60240 * 13 5 4 34 34 H 1.09005 * 109.70354 * 66.24792 * 13 5 4 35 35 H 1.08993 * 109.50286 * 294.68448 * 14 13 5 36 36 H 1.09007 * 109.52056 * 174.60240 * 14 13 5 37 37 H 1.09005 * 109.47101 * 175.02533 * 17 15 14 38 38 H 1.09001 * 109.47567 * 55.02267 * 17 15 14 39 39 H 0.97009 * 119.99961 * 0.02562 * 18 17 15 40 40 H 0.97003 * 120.00670 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0411 -0.7240 -1.2495 5 7 3.5045 -0.8290 -1.1696 6 6 4.2809 -0.3855 -2.1781 7 8 3.7702 0.0478 -3.1933 8 6 5.7465 -0.4254 -2.0507 9 6 6.6704 0.5240 -2.4461 10 7 7.8997 0.1530 -2.1751 11 7 8.1177 -0.9680 -1.6118 12 16 6.7584 -1.6994 -1.3454 13 6 4.1053 -1.4263 0.0308 14 6 3.5709 -0.6946 1.2660 15 6 2.0408 -0.7230 1.2485 16 1 1.6969 -1.7573 1.2352 17 6 1.5036 -0.0231 2.4984 18 7 1.8924 -0.7833 3.6889 19 6 1.5217 -0.3453 4.9322 20 1 0.9424 0.5603 5.0352 21 6 1.8896 -1.0659 6.0602 22 7 2.5952 -2.1699 5.9346 23 14 1.3833 -0.4689 7.7562 24 1 2.4310 0.4345 8.2962 25 1 0.0974 0.2673 7.6584 26 1 1.2191 -1.6337 8.6624 27 1 -0.3634 0.5126 0.8907 28 1 -0.3633 0.5151 -0.8893 29 1 -0.3633 -1.0276 -0.0005 30 1 1.7634 -0.1583 -2.1388 31 1 1.6054 -1.7218 -1.3003 32 1 6.4116 1.4588 -2.9211 33 1 5.1896 -1.3240 -0.0138 34 1 3.8400 -2.4820 0.0881 35 1 3.9157 0.3393 1.2539 36 1 3.9336 -1.1886 2.1674 37 1 0.4165 0.0350 2.4434 38 1 1.9187 0.9830 2.5582 39 1 2.4131 -1.5965 3.5964 40 1 2.8585 -2.4798 5.0539 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183947462.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:31:48 Heat of formation + Delta-G solvation = 28.508776 kcal Electronic energy + Delta-G solvation = -23558.275352 eV Core-core repulsion = 20114.148571 eV Total energy + Delta-G solvation = -3444.126781 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.120 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.03276 -41.34391 -39.34661 -36.88228 -35.33342 -33.70263 -33.04766 -31.97484 -29.27353 -28.27240 -27.43130 -25.53623 -24.35133 -23.68563 -22.81095 -21.27590 -20.67908 -20.18632 -19.34150 -18.39330 -17.64513 -16.98724 -16.85811 -16.27127 -16.07691 -15.97454 -15.60275 -15.47108 -15.27076 -14.65077 -14.43121 -14.34684 -13.97163 -13.76675 -13.23395 -13.06688 -13.03234 -12.92159 -12.69824 -12.56976 -12.10806 -11.90654 -11.85808 -11.75981 -11.47159 -11.43340 -11.29125 -11.18644 -11.11448 -10.90779 -10.63029 -9.88917 -9.06026 -8.37345 -5.30682 -1.36424 -0.38456 0.34922 0.87427 1.44494 1.59638 1.69096 1.76915 1.83588 2.71655 2.86371 3.18762 3.41119 3.54152 3.58501 3.62293 3.71989 3.84461 4.05377 4.13316 4.24705 4.41465 4.49429 4.52261 4.59773 4.62177 4.70293 4.76341 4.89840 5.01088 5.03466 5.11957 5.17204 5.25722 5.38401 5.50946 5.61426 6.00544 6.51439 6.53809 6.71187 7.13125 8.03962 8.14013 9.15189 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.016455 B = 0.003561 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.152746 B = 7860.484571 C = 9121.033254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 H 0.068 0.932 4 C 0.123 3.877 5 N -0.593 5.593 6 C 0.606 3.394 7 O -0.548 6.548 8 C -0.303 4.303 9 C 0.071 3.929 10 N -0.273 5.273 11 N -0.298 5.298 12 S 0.500 5.500 13 C 0.104 3.896 14 C -0.121 4.121 15 C -0.080 4.080 16 H 0.077 0.923 17 C 0.162 3.838 18 N -0.753 5.753 19 C -0.335 4.335 20 H 0.061 0.939 21 C -0.099 4.099 22 N -0.974 5.974 23 Si 1.126 2.874 24 H -0.287 1.287 25 H -0.276 1.276 26 H -0.292 1.292 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.233 0.767 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.027 0.973 38 H 0.007 0.993 39 H 0.363 0.637 40 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.761 1.091 -18.397 18.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 H 0.086 0.914 4 C 0.002 3.998 5 N -0.325 5.325 6 C 0.392 3.608 7 O -0.427 6.427 8 C -0.445 4.445 9 C -0.096 4.096 10 N -0.136 5.136 11 N -0.278 5.278 12 S 0.636 5.364 13 C -0.019 4.019 14 C -0.159 4.159 15 C -0.099 4.099 16 H 0.095 0.905 17 C 0.035 3.965 18 N -0.398 5.398 19 C -0.467 4.467 20 H 0.079 0.921 21 C -0.291 4.291 22 N -0.622 5.622 23 Si 0.951 3.049 24 H -0.214 1.214 25 H -0.201 1.201 26 H -0.219 1.219 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.115 0.885 31 H 0.111 0.889 32 H 0.249 0.751 33 H 0.096 0.904 34 H 0.125 0.875 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.045 0.955 38 H 0.025 0.975 39 H 0.196 0.804 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 3.945 0.115 -16.667 17.128 hybrid contribution -0.630 1.264 -1.897 2.365 sum 3.314 1.378 -18.564 18.908 Atomic orbital electron populations 1.21799 0.93124 1.02848 1.02436 1.21378 0.97087 0.99348 0.92996 0.91401 1.21863 0.76763 1.02474 0.98729 1.48042 1.07794 1.59278 1.17376 1.16602 0.83428 0.77654 0.83158 1.90832 1.74140 1.47980 1.29749 1.27964 1.00488 1.03251 1.12753 1.24732 0.84577 1.02226 0.98019 1.70760 1.21863 1.07735 1.13233 1.78607 1.24245 1.06994 1.17966 1.82576 0.92909 1.21747 1.39206 1.22185 0.97495 0.99109 0.83137 1.21824 0.95829 1.00924 0.97335 1.21265 0.94740 1.00185 0.93701 0.90465 1.20823 0.96827 0.93376 0.85439 1.42549 1.65981 1.29001 1.02288 1.20378 1.31059 1.08394 0.86825 0.92113 1.27046 0.99671 0.96466 1.05923 1.70964 1.42006 1.24496 1.24719 0.82635 0.76008 0.74807 0.71441 1.21380 1.20090 1.21866 0.92838 0.90829 0.91720 0.88537 0.88851 0.75130 0.90397 0.87458 0.92380 0.91228 0.95538 0.97515 0.80387 0.94299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 8.82 71.98 0.63 -2.17 16 2 C -0.09 -1.87 2.41 -10.71 -0.03 -1.90 16 3 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 4 C 0.12 2.27 5.71 86.36 0.49 2.76 16 5 N -0.59 -11.63 2.97 -823.07 -2.45 -14.08 16 6 C 0.61 13.29 7.66 86.59 0.66 13.95 16 7 O -0.55 -15.00 16.53 -4.10 -0.07 -15.06 16 8 C -0.30 -5.85 5.92 24.62 0.15 -5.71 16 9 C 0.07 1.36 11.69 84.78 0.99 2.35 16 10 N -0.27 -6.21 11.54 -57.87 -0.67 -6.88 16 11 N -0.30 -6.65 12.51 37.02 0.46 -6.19 16 12 S 0.50 8.27 20.48 -56.49 -1.16 7.11 16 13 C 0.10 1.92 6.02 86.36 0.52 2.44 16 14 C -0.12 -3.05 5.25 30.67 0.16 -2.89 16 15 C -0.08 -2.13 1.73 -10.76 -0.02 -2.15 16 16 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 17 C 0.16 5.99 5.41 86.38 0.47 6.45 16 18 N -0.75 -35.95 5.32 -343.45 -1.83 -37.78 16 19 C -0.33 -18.42 9.99 84.03 0.84 -17.58 16 20 H 0.06 3.31 7.83 -2.91 -0.02 3.29 16 21 C -0.10 -5.62 5.50 84.86 0.47 -5.15 16 22 N -0.97 -58.81 13.70 21.65 0.30 -58.51 16 23 Si 1.13 51.01 29.92 68.60 2.05 53.06 16 24 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 25 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16 26 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 27 H 0.05 1.22 6.29 -2.39 -0.02 1.21 16 28 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.10 1.85 7.02 -2.39 -0.02 1.83 16 31 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.23 3.18 8.06 -2.91 -0.02 3.15 16 33 H 0.08 1.30 3.82 -16.91 -0.06 1.24 16 34 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.07 2.07 7.15 -2.38 -0.02 2.05 16 37 H 0.03 1.00 6.14 -2.38 -0.01 0.99 16 38 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.36 17.54 5.68 -92.70 -0.53 17.02 16 40 H 0.25 14.61 6.77 -92.71 -0.63 13.98 16 Total: -1.00 -70.34 334.30 2.62 -67.71 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.64 Total: 20.20 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: 5.34 Total: -9.59 kcal Atomic # 7 Polarization: -119.25 SS G_CDS: -4.18 Total: -123.43 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.07 Total: -15.06 kcal Atomic # 14 Polarization: 51.01 SS G_CDS: 2.05 Total: 53.06 kcal Atomic # 16 Polarization: 8.27 SS G_CDS: -1.16 Total: 7.11 kcal Total: -70.34 2.62 -67.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183947462.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.223 kcal (2) G-P(sol) polarization free energy of solvation -70.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds