Wall clock time and date at job start Fri Apr 10 2020 14:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36016 * 116.99987 * 2 1 4 4 C 1.35497 * 120.48639 * 0.02562 * 3 2 1 5 5 O 1.33831 * 121.01877 * 180.02562 * 4 3 2 6 6 C 1.34285 * 122.04119 * 359.97438 * 5 4 3 7 7 C 1.48048 * 119.57251 * 179.97438 * 6 5 4 8 8 O 1.21513 * 120.00069 * 179.97438 * 7 6 5 9 9 N 1.34777 * 120.00033 * 0.02562 * 7 6 5 10 10 C 1.46498 * 119.99828 * 180.27686 * 9 7 6 11 11 C 1.52996 * 109.47059 * 179.72339 * 10 9 7 12 12 C 1.53003 * 109.47301 * 179.97438 * 11 10 9 13 13 H 1.08992 * 109.47039 * 305.00167 * 12 11 10 14 14 C 1.53001 * 109.46949 * 184.99469 * 12 11 10 15 15 N 1.46503 * 109.46803 * 64.99966 * 12 11 10 16 16 C 1.36938 * 119.99628 * 204.99730 * 15 12 11 17 17 H 1.08001 * 120.00307 * 0.02562 * 16 15 12 18 18 C 1.38816 * 120.00044 * 179.97438 * 16 15 12 19 19 N 1.31609 * 120.00152 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99773 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47170 * 89.99582 * 20 18 16 22 22 H 1.48507 * 109.46991 * 209.99967 * 20 18 16 23 23 H 1.48502 * 109.46956 * 329.99388 * 20 18 16 24 24 C 1.35797 * 120.85296 * 0.27259 * 6 5 4 25 25 C 1.42007 * 120.48441 * 180.02562 * 3 2 1 26 26 O 1.22125 * 120.92056 * 359.97438 * 25 3 2 27 27 H 1.08997 * 109.47550 * 59.99601 * 1 2 3 28 28 H 1.09007 * 109.47381 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47139 * 299.99206 * 1 2 3 30 30 H 1.08001 * 119.48689 * 0.02562 * 4 3 2 31 31 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 32 32 H 1.09004 * 109.46963 * 299.72135 * 10 9 7 33 33 H 1.08994 * 109.47567 * 59.72287 * 10 9 7 34 34 H 1.09004 * 109.47066 * 299.99732 * 11 10 9 35 35 H 1.09000 * 109.47665 * 59.99541 * 11 10 9 36 36 H 1.09003 * 109.46585 * 60.00658 * 14 12 11 37 37 H 1.09008 * 109.46576 * 179.97438 * 14 12 11 38 38 H 1.08992 * 109.47820 * 300.00220 * 14 12 11 39 39 H 0.97002 * 120.00479 * 25.00003 * 15 12 11 40 40 H 0.97005 * 120.00432 * 180.02562 * 19 18 16 41 41 H 1.08007 * 120.55359 * 179.70723 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.3182 2.3545 0.0005 5 8 1.9146 3.5525 0.0000 6 6 3.2511 3.6830 -0.0005 7 6 3.8533 5.0355 -0.0016 8 8 5.0617 5.1625 -0.0017 9 7 3.0610 6.1258 -0.0016 10 6 3.6569 7.4641 -0.0088 11 6 2.5466 8.5167 -0.0142 12 6 3.1688 9.9145 -0.0211 13 1 3.8550 10.0108 0.8202 14 6 2.0634 10.9654 0.0992 15 7 3.9008 10.1169 -1.2739 16 6 4.9316 11.0168 -1.3268 17 1 5.2052 11.5770 -0.4450 18 6 5.6256 11.2083 -2.5137 19 7 6.6166 12.0728 -2.5645 20 14 5.1527 10.2388 -4.0389 21 1 4.1280 10.9915 -4.8059 22 1 6.3543 10.0335 -4.8871 23 1 4.6002 8.9206 -3.6359 24 6 4.0575 2.5903 -0.0061 25 6 3.4639 1.2982 -0.0005 26 8 4.1540 0.2906 -0.0006 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 0.2397 2.2975 0.0014 31 1 2.0964 6.0244 -0.0012 32 1 4.2743 7.5918 0.8804 33 1 4.2739 7.5824 -0.8995 34 1 1.9292 8.3891 -0.9034 35 1 1.9295 8.3985 0.8765 36 1 1.5188 10.8148 1.0314 37 1 2.5068 11.9612 0.0947 38 1 1.3772 10.8690 -0.7421 39 1 3.6553 9.6135 -2.0659 40 1 7.1013 12.2069 -3.3940 41 1 5.1319 2.7009 -0.0113 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267135135.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:34:19 Heat of formation + Delta-G solvation = -81.937444 kcal Electronic energy + Delta-G solvation = -24918.276213 eV Core-core repulsion = 20994.314502 eV Total energy + Delta-G solvation = -3923.961711 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.55306 -40.08569 -39.44043 -38.51253 -36.95532 -34.84547 -32.98820 -32.41989 -31.82884 -29.94122 -28.62769 -28.31342 -25.63006 -24.37301 -23.69114 -22.65283 -21.37615 -20.16468 -19.46757 -19.16088 -18.36033 -17.58096 -17.28989 -16.48872 -16.10149 -16.05492 -15.57247 -15.51143 -15.24981 -14.87016 -14.81925 -14.37099 -14.14955 -14.04878 -13.70560 -13.13834 -13.09871 -12.60171 -12.27724 -12.10141 -12.05213 -12.01500 -11.38625 -11.15816 -10.91323 -10.77853 -10.70287 -10.41525 -10.20583 -10.16986 -10.02538 -9.60911 -9.28150 -8.97194 -8.74677 -7.31475 -5.78626 -3.14961 -0.00099 0.49506 1.61500 2.40277 2.49577 2.72882 3.03831 3.35617 3.37352 3.44850 3.73357 3.91836 4.11228 4.43615 4.53058 4.57137 4.67728 4.81360 4.92728 4.96650 5.04234 5.07389 5.36412 5.50385 5.52482 5.55827 5.83233 5.95524 6.02201 6.12600 6.19018 6.31078 6.38124 6.42364 6.48351 6.70912 6.90802 7.12943 7.22914 7.71355 7.96603 8.39975 9.17799 9.90187 10.08674 11.39680 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.020169 B = 0.002712 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.950093 B =10322.597137 C =10894.595223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.283 6.283 3 C -0.050 4.050 4 C -0.006 4.006 5 O -0.197 6.197 6 C 0.093 3.907 7 C 0.569 3.431 8 O -0.493 6.493 9 N -0.706 5.706 10 C 0.115 3.885 11 C -0.137 4.137 12 C 0.180 3.820 13 H 0.059 0.941 14 C -0.164 4.164 15 N -0.748 5.748 16 C -0.244 4.244 17 H 0.091 0.909 18 C 0.006 3.994 19 N -0.933 5.933 20 Si 0.883 3.117 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.278 1.278 24 C -0.228 4.228 25 C 0.408 3.592 26 O -0.455 6.455 27 H 0.059 0.941 28 H 0.108 0.892 29 H 0.059 0.941 30 H 0.204 0.796 31 H 0.406 0.594 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.039 0.961 37 H 0.059 0.941 38 H 0.045 0.955 39 H 0.360 0.640 40 H 0.260 0.740 41 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.544 -20.123 7.277 28.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.196 6.196 3 C -0.098 4.098 4 C -0.071 4.071 5 O -0.099 6.099 6 C 0.042 3.958 7 C 0.351 3.649 8 O -0.368 6.368 9 N -0.357 5.357 10 C -0.007 4.007 11 C -0.175 4.175 12 C 0.070 3.930 13 H 0.077 0.923 14 C -0.224 4.224 15 N -0.392 5.392 16 C -0.374 4.374 17 H 0.109 0.891 18 C -0.190 4.190 19 N -0.580 5.580 20 Si 0.714 3.286 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.204 1.204 24 C -0.249 4.249 25 C 0.294 3.706 26 O -0.338 6.338 27 H 0.078 0.922 28 H 0.127 0.873 29 H 0.077 0.923 30 H 0.220 0.780 31 H 0.241 0.759 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.193 0.807 40 H 0.070 0.930 41 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -17.170 -20.320 7.335 27.596 hybrid contribution -1.122 -0.686 -1.259 1.820 sum -18.292 -21.007 6.077 28.510 Atomic orbital electron populations 1.23246 0.78351 1.05182 1.01376 1.86298 1.20994 1.23643 1.88632 1.21045 0.95373 0.86067 1.07304 1.23905 0.98180 0.81083 1.03981 1.82895 1.20209 1.30888 1.75947 1.22568 0.80089 0.96389 0.96762 1.17368 0.86619 0.81983 0.78893 1.90948 1.12634 1.84449 1.48747 1.46091 1.10435 1.06458 1.72729 1.21685 0.96610 0.78019 1.04336 1.22132 0.97373 0.95851 1.02186 1.20123 0.92420 0.89847 0.90615 0.92258 1.22394 0.99154 1.01501 0.99358 1.42832 1.39114 1.49515 1.07743 1.19046 1.06274 1.14292 0.97767 0.89144 1.24667 0.97899 0.98972 0.97463 1.69689 1.23755 1.37830 1.26743 0.86578 0.77612 0.79993 0.84438 1.21212 1.21740 1.20410 1.23202 1.03908 0.90879 1.06932 1.17110 0.86254 0.89851 0.77414 1.90858 1.65102 1.37933 1.39924 0.92248 0.87340 0.92257 0.78005 0.75918 0.90482 0.89480 0.91499 0.91137 0.94184 0.92148 0.93600 0.80706 0.93033 0.80247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.82 101.05 0.99 1.04 16 2 O -0.28 -2.64 10.35 -35.03 -0.36 -3.00 16 3 C -0.05 -0.48 6.72 -39.12 -0.26 -0.74 16 4 C -0.01 -0.04 10.43 29.75 0.31 0.28 16 5 O -0.20 -1.47 9.06 7.01 0.06 -1.41 16 6 C 0.09 0.95 6.90 -36.43 -0.25 0.70 16 7 C 0.57 7.10 7.80 -12.24 -0.10 7.00 16 8 O -0.49 -8.11 16.26 5.35 0.09 -8.03 16 9 N -0.71 -7.59 5.55 -61.19 -0.34 -7.93 16 10 C 0.12 1.57 5.56 -4.04 -0.02 1.54 16 11 C -0.14 -1.69 4.87 -26.73 -0.13 -1.82 16 12 C 0.18 3.02 2.89 -67.93 -0.20 2.82 16 13 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 14 C -0.16 -2.53 9.49 37.16 0.35 -2.18 16 15 N -0.75 -16.31 4.38 -53.42 -0.23 -16.55 16 16 C -0.24 -6.59 10.41 -15.06 -0.16 -6.74 16 17 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 18 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 19 N -0.93 -28.96 13.97 55.49 0.78 -28.18 16 20 Si 0.88 21.78 27.74 -169.99 -4.71 17.07 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 23 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 24 C -0.23 -2.60 9.56 -38.94 -0.37 -2.98 16 25 C 0.41 5.11 6.82 -36.62 -0.25 4.86 16 26 O -0.46 -7.34 17.74 -10.44 -0.19 -7.52 16 27 H 0.06 0.12 7.67 -51.93 -0.40 -0.28 16 28 H 0.11 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.11 7.66 -51.93 -0.40 -0.28 16 30 H 0.20 0.40 6.22 -52.49 -0.33 0.07 16 31 H 0.41 3.06 7.87 -40.82 -0.32 2.74 16 32 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.09 1.48 7.75 -51.93 -0.40 1.08 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 1.07 8.14 -51.92 -0.42 0.64 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.36 7.77 5.66 -40.82 -0.23 7.54 16 40 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 41 H 0.18 2.13 7.57 -52.48 -0.40 1.73 16 LS Contribution 354.38 15.07 5.34 5.34 Total: -1.00 -35.83 354.38 -5.19 -41.03 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -5.44 Total: 5.32 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -0.18 Total: 3.86 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: 0.20 Total: -52.66 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.40 Total: -19.96 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.71 Total: 17.07 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.83 -5.19 -41.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267135135.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.912 kcal (2) G-P(sol) polarization free energy of solvation -35.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds