Wall clock time and date at job start Fri Apr 10 2020 14:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46943 * 2 1 4 4 N 1.46498 * 109.47277 * 120.00674 * 2 1 3 5 5 C 1.36937 * 119.99539 * 275.00205 * 4 2 1 6 6 H 1.07997 * 120.00437 * 359.97438 * 5 4 2 7 7 C 1.38816 * 119.99687 * 180.02562 * 5 4 2 8 8 N 1.31621 * 120.00136 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99793 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47122 * 90.00197 * 9 7 5 11 11 H 1.48505 * 109.46548 * 209.99997 * 9 7 5 12 12 H 1.48502 * 109.47172 * 329.99601 * 9 7 5 13 13 C 1.53000 * 109.46957 * 240.00789 * 2 1 3 14 14 H 1.09006 * 109.52478 * 299.91214 * 13 2 1 15 15 C 1.53038 * 109.50368 * 59.99695 * 13 2 1 16 16 C 1.53036 * 109.53140 * 181.32178 * 15 13 2 17 17 C 1.53188 * 109.31189 * 298.61967 * 16 15 13 18 18 N 1.46926 * 108.77007 * 54.65351 * 17 16 15 19 19 C 1.34769 * 120.63305 * 126.40712 * 18 17 16 20 20 O 1.21566 * 120.00040 * 173.28888 * 19 18 17 21 21 C 1.47756 * 119.99848 * 353.28638 * 19 18 17 22 22 C 1.39354 * 124.11377 * 172.98788 * 21 19 18 23 23 N 1.30088 * 112.14053 * 179.81979 * 22 21 19 24 24 S 1.55916 * 108.75796 * 0.42614 * 23 22 21 25 25 N 1.31488 * 124.12009 * 353.28782 * 21 19 18 26 26 C 1.46930 * 118.73376 * 306.38406 * 18 17 16 27 27 H 1.08998 * 109.47396 * 299.99588 * 1 2 3 28 28 H 1.08997 * 109.47057 * 59.99710 * 1 2 3 29 29 H 1.09005 * 109.46979 * 179.97438 * 1 2 3 30 30 H 0.96994 * 120.00001 * 94.99855 * 4 2 1 31 31 H 0.96995 * 119.99859 * 180.02562 * 8 7 5 32 32 H 1.09004 * 109.45916 * 301.34117 * 15 13 2 33 33 H 1.08999 * 109.45780 * 61.30678 * 15 13 2 34 34 H 1.08999 * 109.49482 * 58.58044 * 16 15 13 35 35 H 1.08996 * 109.49883 * 178.67848 * 16 15 13 36 36 H 1.09002 * 109.59914 * 294.86151 * 17 16 15 37 37 H 1.09005 * 109.58432 * 174.43741 * 17 16 15 38 38 H 1.07996 * 123.93185 * 0.02562 * 22 21 19 39 39 H 1.08996 * 109.58724 * 293.81762 * 26 18 17 40 40 H 1.08999 * 109.58033 * 173.39727 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1491 -0.0077 2.3757 6 1 1.8926 1.0403 2.4242 7 6 2.6124 -0.6620 3.5089 8 7 2.9264 -1.9388 3.4494 9 14 2.7914 0.2700 5.1179 10 1 1.5240 0.1787 5.8865 11 1 3.8964 -0.3233 5.9131 12 1 3.0962 1.6952 4.8332 13 6 2.0400 -0.7211 -1.2494 14 1 1.6784 -1.7494 -1.2496 15 6 1.5302 -0.0001 -2.4993 16 6 2.0126 -0.7398 -3.7491 17 6 3.5441 -0.7366 -3.7803 18 7 4.0438 -1.2968 -2.5173 19 6 4.9188 -2.3219 -2.5193 20 8 5.4183 -2.6968 -1.4763 21 6 5.2708 -2.9902 -3.7892 22 6 6.2641 -3.9597 -3.9131 23 7 6.3760 -4.3938 -5.1342 24 16 5.3421 -3.6449 -6.0293 25 7 4.6889 -2.7384 -4.9412 26 6 3.5719 -0.7179 -1.2520 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 2.2491 -1.6318 1.1524 31 1 3.2498 -2.3961 4.2414 32 1 0.4404 0.0206 -2.4875 33 1 1.9126 1.0205 -2.5111 34 1 1.6512 -1.7679 -3.7256 35 1 1.6297 -0.2394 -4.6385 36 1 3.9053 0.2854 -3.8949 37 1 3.8939 -1.3455 -4.6139 38 1 6.8683 -4.3122 -3.0903 39 1 3.9353 0.3056 -1.1604 40 1 3.9400 -1.3146 -0.4174 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753792073.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:34:37 Heat of formation + Delta-G solvation = 48.617045 kcal Electronic energy + Delta-G solvation = -23881.148597 eV Core-core repulsion = 20437.893775 eV Total energy + Delta-G solvation = -3443.254821 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.46158 -39.54422 -37.68543 -35.53746 -33.98337 -32.76799 -31.72674 -29.85797 -28.38853 -27.57454 -25.31831 -24.22101 -23.11765 -22.47796 -20.98114 -19.85784 -19.56583 -19.26494 -17.30771 -16.82706 -16.31400 -15.99678 -15.42999 -14.88903 -14.80773 -14.44457 -14.14362 -13.70971 -13.58796 -13.14551 -12.99009 -12.68480 -12.44177 -12.32488 -12.07196 -11.67163 -11.50267 -11.43078 -11.25317 -10.98917 -10.84190 -10.70529 -10.67268 -10.28138 -10.23835 -10.14456 -9.89812 -9.58451 -9.46224 -9.45503 -8.86152 -8.45465 -6.89403 -5.68939 -2.98201 0.12208 1.10476 1.34324 1.36812 3.00036 3.09154 3.47890 3.52786 3.54930 4.18288 4.44522 4.63368 4.84437 4.96982 5.05214 5.13348 5.26004 5.29143 5.46620 5.63156 5.73133 5.83364 5.86469 5.90717 6.02383 6.07811 6.12721 6.20850 6.24808 6.27349 6.45292 6.49296 6.55500 6.73020 6.76542 6.94250 7.13015 7.46370 7.76153 8.11185 8.48697 9.59896 10.17465 10.51981 11.53319 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.019735 B = 0.003646 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.441018 B = 7677.804676 C = 8806.861391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.180 3.820 3 H 0.047 0.953 4 N -0.724 5.724 5 C -0.239 4.239 6 H 0.069 0.931 7 C -0.012 4.012 8 N -0.929 5.929 9 Si 0.904 3.096 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.102 4.102 14 H 0.070 0.930 15 C -0.117 4.117 16 C -0.127 4.127 17 C 0.067 3.933 18 N -0.587 5.587 19 C 0.593 3.407 20 O -0.512 6.512 21 C 0.026 3.974 22 C 0.090 3.910 23 N -0.571 5.571 24 S 0.684 5.316 25 N -0.536 5.536 26 C 0.123 3.877 27 H 0.052 0.948 28 H 0.038 0.962 29 H 0.044 0.956 30 H 0.384 0.616 31 H 0.255 0.745 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.143 0.857 38 H 0.216 0.784 39 H 0.068 0.932 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.165 -0.399 -23.249 23.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.070 3.930 3 H 0.065 0.935 4 N -0.366 5.366 5 C -0.370 4.370 6 H 0.087 0.913 7 C -0.208 4.208 8 N -0.577 5.577 9 Si 0.735 3.265 10 H -0.219 1.219 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.122 4.122 14 H 0.088 0.912 15 C -0.155 4.155 16 C -0.165 4.165 17 C -0.058 4.058 18 N -0.319 5.319 19 C 0.374 3.626 20 O -0.386 6.386 21 C -0.149 4.149 22 C -0.104 4.104 23 N -0.412 5.412 24 S 0.729 5.271 25 N -0.385 5.385 26 C 0.002 3.998 27 H 0.071 0.929 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.218 0.782 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.159 0.841 38 H 0.232 0.768 39 H 0.087 0.913 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.136 -0.719 -24.622 24.725 hybrid contribution 0.334 0.343 2.742 2.784 sum 2.470 -0.376 -21.880 22.022 Atomic orbital electron populations 1.22477 0.99291 1.00790 0.99880 1.20174 0.91840 0.95272 0.85727 0.93470 1.42451 1.78096 1.10745 1.05288 1.19196 1.36681 0.93795 0.87356 0.91289 1.24726 1.02169 0.95933 0.97949 1.69664 1.50658 1.08641 1.28767 0.86245 0.77213 0.78818 0.84222 1.21883 1.21834 1.20830 1.21765 0.94419 1.00569 0.95479 0.91202 1.21663 1.00977 0.99075 0.93745 1.21833 0.95121 1.01191 0.98371 1.22931 0.94880 1.00093 0.87932 1.47983 1.42744 1.32329 1.08853 1.16880 0.80241 0.80201 0.85253 1.90911 1.52383 1.64378 1.30908 1.22771 0.97862 1.01014 0.93219 1.23838 0.97914 0.94322 0.94281 1.72273 1.28391 1.30888 1.09641 1.79206 1.12960 1.14841 1.20100 1.72737 1.30851 1.27629 1.07276 1.21823 0.94040 0.99229 0.84723 0.92878 0.94277 0.93635 0.78210 0.93540 0.91290 0.91934 0.91854 0.91208 0.92072 0.84147 0.76763 0.91343 0.87340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 9.14 37.16 0.34 -2.57 16 2 C 0.18 3.48 2.47 -67.93 -0.17 3.31 16 3 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 4 N -0.72 -17.95 4.52 -53.42 -0.24 -18.19 16 5 C -0.24 -6.61 9.93 -15.06 -0.15 -6.76 16 6 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 7 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 8 N -0.93 -28.51 13.06 55.49 0.72 -27.79 16 9 Si 0.90 22.66 29.55 -169.99 -5.02 17.63 16 10 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 11 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 13 C -0.10 -1.66 1.97 -90.50 -0.18 -1.84 16 14 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 15 C -0.12 -1.47 4.85 -26.69 -0.13 -1.60 16 16 C -0.13 -1.39 6.08 -26.62 -0.16 -1.55 16 17 C 0.07 0.78 6.30 -3.71 -0.02 0.76 16 18 N -0.59 -8.76 2.97 -173.91 -0.52 -9.28 16 19 C 0.59 9.37 7.68 -12.37 -0.10 9.28 16 20 O -0.51 -9.95 16.26 5.31 0.09 -9.86 16 21 C 0.03 0.33 6.62 -83.71 -0.55 -0.23 16 22 C 0.09 0.99 11.23 -17.87 -0.20 0.79 16 23 N -0.57 -5.86 11.41 19.42 0.22 -5.64 16 24 S 0.68 5.31 23.69 -107.50 -2.55 2.76 16 25 N -0.54 -5.54 7.64 23.17 0.18 -5.36 16 26 C 0.12 2.13 5.45 -3.71 -0.02 2.10 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.04 0.57 6.40 -51.93 -0.33 0.23 16 29 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.38 10.34 7.62 -40.82 -0.31 10.03 16 31 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 32 H 0.07 0.83 6.36 -51.93 -0.33 0.50 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.14 1.53 3.63 -85.44 -0.31 1.22 16 38 H 0.22 2.10 8.06 -52.49 -0.42 1.68 16 39 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.11 2.32 6.57 -51.93 -0.34 1.98 16 LS Contribution 335.64 15.07 5.06 5.06 Total: -1.00 -32.38 335.64 -8.89 -41.28 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -5.40 Total: 8.11 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -1.44 Total: 1.27 kcal Atomic # 7 Polarization: -66.62 SS G_CDS: 0.36 Total: -66.26 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Atomic # 16 Polarization: 5.31 SS G_CDS: -2.55 Total: 2.76 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.38 -8.89 -41.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753792073.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.895 kcal (2) G-P(sol) polarization free energy of solvation -32.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds