Wall clock time and date at job start Fri Apr 10 2020 14:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31769 * 118.79906 * 2 1 4 4 C 1.33011 * 121.08293 * 180.02562 * 3 2 1 5 5 S 1.76195 * 120.61135 * 179.97438 * 4 3 2 6 6 C 1.80997 * 100.00050 * 0.02562 * 5 4 3 7 7 C 1.50701 * 109.47252 * 180.02562 * 6 5 4 8 8 H 1.08001 * 120.00056 * 359.97438 * 7 6 5 9 9 C 1.37874 * 119.99992 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00199 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00145 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.46768 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47094 * 120.00415 * 11 9 7 14 14 H 1.48495 * 109.47212 * 240.00349 * 11 9 7 15 15 C 1.41069 * 118.78142 * 359.97438 * 4 3 2 16 16 C 1.43205 * 121.06086 * 180.02562 * 15 4 3 17 17 N 4.76705 * 137.64647 * 0.02562 * 3 1 2 18 18 C 1.40822 * 117.88333 * 0.27949 * 15 4 3 19 19 C 1.48102 * 120.61628 * 179.72105 * 18 15 4 20 20 C 1.39484 * 120.13305 * 324.72112 * 19 18 15 21 21 C 1.37976 * 119.86317 * 179.71997 * 20 19 18 22 22 C 1.38351 * 120.13269 * 0.56013 * 21 20 19 23 23 C 1.38339 * 120.27283 * 359.71721 * 22 21 20 24 24 C 1.37979 * 120.13938 * 0.02562 * 23 22 21 25 25 N 1.31714 * 118.80099 * 179.97438 * 2 1 3 26 26 H 1.08999 * 109.47008 * 89.99651 * 1 2 3 27 27 H 1.08999 * 109.47149 * 210.00140 * 1 2 3 28 28 H 1.09001 * 109.46730 * 329.99606 * 1 2 3 29 29 H 1.09001 * 109.47091 * 299.99662 * 6 5 4 30 30 H 1.08993 * 109.47248 * 59.99743 * 6 5 4 31 31 H 0.97001 * 119.99911 * 180.02562 * 10 9 7 32 32 H 1.07997 * 120.06578 * 0.02562 * 20 19 18 33 33 H 1.08005 * 119.93632 * 180.30151 * 21 20 19 34 34 H 1.08002 * 119.86256 * 179.74499 * 22 21 20 35 35 H 1.08007 * 119.93340 * 179.97438 * 23 22 21 36 36 H 1.08000 * 120.07081 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1418 1.1547 0.0000 4 6 3.4709 1.2077 -0.0005 5 16 4.3070 2.7587 -0.0012 6 6 2.8871 3.8811 -0.0001 7 6 3.3741 5.3073 -0.0011 8 1 4.4338 5.5160 -0.0019 9 6 2.4670 6.3455 -0.0011 10 7 1.1766 6.0914 0.0003 11 14 3.0706 8.1134 -0.0017 12 1 4.5555 8.1293 -0.0027 13 1 2.5677 8.8078 -1.2142 14 1 2.5686 8.8083 1.2108 15 6 4.1988 -0.0007 -0.0005 16 6 5.6309 -0.0005 -0.0005 17 7 6.7668 -0.0004 -0.0014 18 6 3.4725 -1.2071 -0.0060 19 6 4.1754 -2.5107 -0.0125 20 6 5.3742 -2.6563 -0.7104 21 6 6.0274 -3.8717 -0.7080 22 6 5.4895 -4.9478 -0.0247 23 6 4.2978 -4.8112 0.6645 24 6 3.6379 -3.5995 0.6739 25 7 2.1416 -1.1542 0.0005 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 2.2828 3.7034 -0.8897 30 1 2.2841 3.7034 0.8902 31 1 0.5384 6.8219 0.0000 32 1 5.7929 -1.8181 -1.2475 33 1 6.9583 -3.9844 -1.2439 34 1 6.0023 -5.8983 -0.0291 35 1 3.8827 -5.6550 1.1956 36 1 2.7079 -3.4940 1.2127 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075279002.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:31:23 Heat of formation + Delta-G solvation = 93.775993 kcal Electronic energy + Delta-G solvation = -21401.204939 eV Core-core repulsion = 18169.498614 eV Total energy + Delta-G solvation = -3231.706325 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 311.079 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.06045 -39.13355 -36.66949 -34.27503 -33.33784 -33.26497 -31.19136 -30.61979 -29.04271 -28.54939 -25.11726 -24.23299 -23.06723 -22.43972 -21.65510 -19.10088 -17.94766 -17.75518 -16.82525 -16.23792 -15.65892 -15.50542 -14.83781 -14.73216 -14.23738 -13.84128 -13.56616 -13.46690 -13.32629 -13.16059 -12.94217 -12.69632 -12.66805 -12.46516 -12.31169 -12.23625 -11.55966 -11.37743 -11.20054 -11.06582 -10.91609 -10.86120 -10.62302 -9.74786 -9.73154 -9.39439 -9.18248 -9.13114 -8.81354 -8.71982 -7.29266 -6.29431 -4.37238 0.21468 0.66923 1.17304 1.48110 1.85807 2.66623 3.02062 3.18849 3.20758 3.26717 3.34437 3.46825 3.67849 3.84126 3.90841 4.18858 4.26330 4.57888 4.68137 4.76787 4.87373 5.02645 5.07741 5.17020 5.21399 5.35438 5.59724 5.60794 5.72384 5.80852 5.83486 6.15164 6.22700 6.24204 6.34865 6.67828 6.84460 6.98414 7.09632 7.54652 7.59766 7.82905 8.07658 8.63934 9.27317 10.80828 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.023436 B = 0.003383 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.452131 B = 8274.950804 C = 9361.282066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.362 3.638 3 N -0.513 5.513 4 C 0.215 3.785 5 S -0.049 6.049 6 C 0.071 3.929 7 C -0.530 4.530 8 H 0.067 0.933 9 C 0.072 3.928 10 N -0.882 5.882 11 Si 0.906 3.094 12 H -0.270 1.270 13 H -0.280 1.280 14 H -0.280 1.280 15 C -0.144 4.144 16 C 0.273 3.727 17 N -0.405 5.405 18 C 0.280 3.720 19 C -0.059 4.059 20 C -0.090 4.090 21 C -0.121 4.121 22 C -0.102 4.102 23 C -0.127 4.127 24 C -0.067 4.067 25 N -0.533 5.533 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.267 0.733 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.294 -19.880 0.067 19.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.092 3.908 3 N -0.232 5.232 4 C -0.044 4.044 5 S 0.196 5.804 6 C -0.076 4.076 7 C -0.570 4.570 8 H 0.085 0.915 9 C -0.133 4.133 10 N -0.518 5.518 11 Si 0.733 3.267 12 H -0.194 1.194 13 H -0.206 1.206 14 H -0.206 1.206 15 C -0.161 4.161 16 C -0.043 4.043 17 N -0.081 5.081 18 C 0.131 3.869 19 C -0.061 4.061 20 C -0.110 4.110 21 C -0.139 4.139 22 C -0.121 4.121 23 C -0.145 4.145 24 C -0.086 4.086 25 N -0.250 5.250 26 H 0.109 0.891 27 H 0.105 0.895 28 H 0.112 0.888 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.143 0.857 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.042 -19.318 0.074 19.556 hybrid contribution -0.681 0.785 -0.044 1.041 sum 2.360 -18.533 0.030 18.682 Atomic orbital electron populations 1.20663 0.85046 1.04569 1.04319 1.23473 0.98374 0.82858 0.86091 1.68960 1.06859 1.29183 1.18221 1.24372 0.92439 0.98530 0.89017 1.86120 1.17862 0.92336 1.84049 1.21430 0.89902 0.93471 1.02773 1.20684 0.93736 0.88391 1.54161 0.91452 1.24920 0.94645 0.99531 0.94220 1.69969 1.00775 1.32736 1.48355 0.86305 0.79226 0.83296 0.77914 1.19397 1.20567 1.20562 1.17125 0.86784 0.94650 1.17585 1.24704 0.91750 0.93776 0.94092 1.81193 1.11130 1.07095 1.08675 1.19970 0.89029 0.90696 0.87194 1.18377 0.95117 0.91253 1.01316 1.21385 0.93485 0.98243 0.97854 1.21063 1.00157 0.92587 1.00065 1.21330 0.95754 0.98743 0.96246 1.21141 0.95758 0.97468 1.00130 1.21266 0.99065 0.91298 0.97017 1.68394 1.07434 1.29841 1.19365 0.89105 0.89460 0.88801 0.92487 0.92494 0.92322 0.85730 0.85440 0.85666 0.85369 0.84770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.01 10.30 36.01 0.37 -0.64 16 2 C 0.36 5.65 7.64 -157.28 -1.20 4.45 16 3 N -0.51 -9.58 9.18 -9.19 -0.08 -9.67 16 4 C 0.21 4.08 7.05 -15.97 -0.11 3.97 16 5 S -0.05 -1.03 21.11 -107.50 -2.27 -3.30 16 6 C 0.07 1.77 4.63 36.01 0.17 1.93 16 7 C -0.53 -14.22 9.13 -34.44 -0.31 -14.53 16 8 H 0.07 1.79 7.71 -52.49 -0.40 1.39 16 9 C 0.07 1.95 5.46 -17.82 -0.10 1.85 16 10 N -0.88 -24.58 13.29 55.43 0.74 -23.84 16 11 Si 0.91 20.58 29.54 -169.99 -5.02 15.56 16 12 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 13 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 14 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 15 C -0.14 -2.43 5.79 -105.92 -0.61 -3.04 16 16 C 0.27 4.59 11.05 -22.47 -0.25 4.34 16 17 N -0.40 -7.01 18.15 41.83 0.76 -6.25 16 18 C 0.28 4.24 6.53 -82.25 -0.54 3.70 16 19 C -0.06 -0.78 5.58 -104.92 -0.59 -1.36 16 20 C -0.09 -1.12 8.48 -39.21 -0.33 -1.45 16 21 C -0.12 -1.21 10.03 -39.64 -0.40 -1.61 16 22 C -0.10 -0.88 10.04 -39.50 -0.40 -1.28 16 23 C -0.13 -1.12 10.03 -39.64 -0.40 -1.52 16 24 C -0.07 -0.74 9.61 -39.21 -0.38 -1.11 16 25 N -0.53 -7.96 9.98 -7.08 -0.07 -8.04 16 26 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.06 1.49 8.14 -51.92 -0.42 1.07 16 30 H 0.06 1.49 8.14 -51.92 -0.42 1.07 16 31 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.12 1.65 5.77 -52.49 -0.30 1.35 16 33 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 34 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 35 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 36 H 0.13 1.35 7.99 -52.49 -0.42 0.93 16 LS Contribution 338.57 15.07 5.10 5.10 Total: -1.00 -29.25 338.57 -9.56 -38.81 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: -3.64 Total: -2.07 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -5.07 Total: -6.30 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: 1.34 Total: -47.79 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: -1.03 SS G_CDS: -2.27 Total: -3.30 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.25 -9.56 -38.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075279002.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.585 kcal (2) G-P(sol) polarization free energy of solvation -29.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds