Wall clock time and date at job start Fri Apr 10 2020 14:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31769 * 118.79906 * 2 1 4 4 C 1.33011 * 121.08293 * 180.02562 * 3 2 1 5 5 S 1.76195 * 120.61135 * 179.97438 * 4 3 2 6 6 C 1.80997 * 100.00050 * 0.02562 * 5 4 3 7 7 C 1.50701 * 109.47252 * 180.02562 * 6 5 4 8 8 H 1.08001 * 120.00056 * 359.97438 * 7 6 5 9 9 C 1.37874 * 119.99992 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00199 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00145 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.46768 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47094 * 120.00415 * 11 9 7 14 14 H 1.48495 * 109.47212 * 240.00349 * 11 9 7 15 15 C 1.41069 * 118.78142 * 359.97438 * 4 3 2 16 16 C 1.43205 * 121.06086 * 180.02562 * 15 4 3 17 17 N 4.76705 * 137.64647 * 0.02562 * 3 1 2 18 18 C 1.40822 * 117.88333 * 0.27949 * 15 4 3 19 19 C 1.48102 * 120.61628 * 179.72105 * 18 15 4 20 20 C 1.39484 * 120.13305 * 324.72112 * 19 18 15 21 21 C 1.37976 * 119.86317 * 179.71997 * 20 19 18 22 22 C 1.38351 * 120.13269 * 0.56013 * 21 20 19 23 23 C 1.38339 * 120.27283 * 359.71721 * 22 21 20 24 24 C 1.37979 * 120.13938 * 0.02562 * 23 22 21 25 25 N 1.31714 * 118.80099 * 179.97438 * 2 1 3 26 26 H 1.08999 * 109.47008 * 89.99651 * 1 2 3 27 27 H 1.08999 * 109.47149 * 210.00140 * 1 2 3 28 28 H 1.09001 * 109.46730 * 329.99606 * 1 2 3 29 29 H 1.09001 * 109.47091 * 299.99662 * 6 5 4 30 30 H 1.08993 * 109.47248 * 59.99743 * 6 5 4 31 31 H 0.97001 * 119.99911 * 180.02562 * 10 9 7 32 32 H 1.07997 * 120.06578 * 0.02562 * 20 19 18 33 33 H 1.08005 * 119.93632 * 180.30151 * 21 20 19 34 34 H 1.08002 * 119.86256 * 179.74499 * 22 21 20 35 35 H 1.08007 * 119.93340 * 179.97438 * 23 22 21 36 36 H 1.08000 * 120.07081 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1418 1.1547 0.0000 4 6 3.4709 1.2077 -0.0005 5 16 4.3070 2.7587 -0.0012 6 6 2.8871 3.8811 -0.0001 7 6 3.3741 5.3073 -0.0011 8 1 4.4338 5.5160 -0.0019 9 6 2.4670 6.3455 -0.0011 10 7 1.1766 6.0914 0.0003 11 14 3.0706 8.1134 -0.0017 12 1 4.5555 8.1293 -0.0027 13 1 2.5677 8.8078 -1.2142 14 1 2.5686 8.8083 1.2108 15 6 4.1988 -0.0007 -0.0005 16 6 5.6309 -0.0005 -0.0005 17 7 6.7668 -0.0004 -0.0014 18 6 3.4725 -1.2071 -0.0060 19 6 4.1754 -2.5107 -0.0125 20 6 5.3742 -2.6563 -0.7104 21 6 6.0274 -3.8717 -0.7080 22 6 5.4895 -4.9478 -0.0247 23 6 4.2978 -4.8112 0.6645 24 6 3.6379 -3.5995 0.6739 25 7 2.1416 -1.1542 0.0005 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 2.2828 3.7034 -0.8897 30 1 2.2841 3.7034 0.8902 31 1 0.5384 6.8219 0.0000 32 1 5.7929 -1.8181 -1.2475 33 1 6.9583 -3.9844 -1.2439 34 1 6.0023 -5.8983 -0.0291 35 1 3.8827 -5.6550 1.1956 36 1 2.7079 -3.4940 1.2127 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075279002.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:31:23 Heat of formation + Delta-G solvation = 79.171573 kcal Electronic energy + Delta-G solvation = -21401.838234 eV Core-core repulsion = 18169.498614 eV Total energy + Delta-G solvation = -3232.339620 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 311.079 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.33149 -40.01286 -38.00190 -35.53141 -35.28622 -34.60233 -31.98889 -31.56788 -30.81303 -29.96408 -26.36090 -25.65950 -24.72840 -23.37368 -22.61815 -20.44056 -19.27561 -19.06248 -18.43519 -17.60052 -16.86601 -16.76719 -16.39672 -15.70216 -15.49972 -14.93263 -14.82634 -14.74802 -14.60178 -14.50213 -14.40066 -14.29842 -14.01337 -13.80877 -13.39718 -13.25676 -12.80921 -12.75376 -12.58406 -12.48310 -12.39383 -12.31476 -11.99544 -11.64453 -11.31473 -10.97344 -10.74916 -10.48654 -9.96882 -9.75654 -8.96871 -8.34806 -6.50830 -0.99382 -0.62132 0.27941 0.38438 0.49690 1.20808 1.40082 1.40922 1.48854 1.56860 1.68212 2.34937 2.43563 2.46449 2.58867 2.78046 2.96295 2.99902 3.31935 3.75896 3.90670 3.97055 4.01463 4.22069 4.45329 4.53431 4.67329 4.70647 4.77121 4.88689 4.91832 5.01826 5.04255 5.24038 5.33840 5.44060 5.49544 5.51784 5.57675 5.78984 5.93440 6.18401 6.56300 6.77024 7.18190 8.76704 Molecular weight = 311.08amu Principal moments of inertia in cm(-1) A = 0.023436 B = 0.003383 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.452131 B = 8274.950804 C = 9361.282066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.359 3.641 3 N -0.544 5.544 4 C 0.207 3.793 5 S -0.059 6.059 6 C 0.086 3.914 7 C -0.552 4.552 8 H 0.065 0.935 9 C 0.024 3.976 10 N -0.913 5.913 11 Si 0.974 3.026 12 H -0.266 1.266 13 H -0.272 1.272 14 H -0.272 1.272 15 C -0.150 4.150 16 C 0.281 3.719 17 N -0.415 5.415 18 C 0.291 3.709 19 C -0.088 4.088 20 C -0.107 4.107 21 C -0.126 4.126 22 C -0.090 4.090 23 C -0.121 4.121 24 C -0.070 4.070 25 N -0.521 5.521 26 H 0.107 0.893 27 H 0.116 0.884 28 H 0.087 0.913 29 H 0.032 0.968 30 H 0.032 0.968 31 H 0.272 0.728 32 H 0.108 0.892 33 H 0.145 0.855 34 H 0.161 0.839 35 H 0.162 0.838 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.525 -22.452 0.349 22.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.090 3.910 3 N -0.263 5.263 4 C -0.052 4.052 5 S 0.185 5.815 6 C -0.062 4.062 7 C -0.591 4.591 8 H 0.083 0.917 9 C -0.179 4.179 10 N -0.551 5.551 11 Si 0.797 3.203 12 H -0.190 1.190 13 H -0.197 1.197 14 H -0.197 1.197 15 C -0.167 4.167 16 C -0.035 4.035 17 N -0.091 5.091 18 C 0.142 3.858 19 C -0.089 4.089 20 C -0.126 4.126 21 C -0.144 4.144 22 C -0.108 4.108 23 C -0.139 4.139 24 C -0.089 4.089 25 N -0.238 5.238 26 H 0.125 0.875 27 H 0.134 0.866 28 H 0.106 0.894 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.081 0.919 32 H 0.126 0.874 33 H 0.163 0.837 34 H 0.179 0.821 35 H 0.180 0.820 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.261 -21.916 0.356 22.160 hybrid contribution -0.774 1.268 -0.138 1.492 sum 2.486 -20.648 0.218 20.798 Atomic orbital electron populations 1.20840 0.82166 1.05661 1.05633 1.24256 0.99994 0.82136 0.84656 1.68951 1.06837 1.31046 1.19489 1.24117 0.93081 0.97756 0.90251 1.85821 1.16303 0.93239 1.86100 1.20940 0.90866 0.94086 1.00299 1.21009 0.93830 0.89735 1.54535 0.91680 1.25829 0.94729 1.03864 0.93459 1.70069 1.01913 1.34262 1.48837 0.85264 0.78799 0.77907 0.78303 1.18972 1.19723 1.19711 1.17147 0.86804 0.94556 1.18212 1.24654 0.91676 0.93416 0.93749 1.81174 1.11307 1.07490 1.09125 1.20413 0.89055 0.91226 0.85119 1.18415 0.95945 0.90821 1.03696 1.21382 0.93742 0.98987 0.98510 1.21354 1.00701 0.92078 1.00290 1.21782 0.95327 0.99505 0.94163 1.21549 0.95433 0.97431 0.99453 1.21449 0.99454 0.91442 0.96601 1.68554 1.07270 1.29127 1.18843 0.87461 0.86594 0.89379 0.94941 0.94927 0.91874 0.87434 0.83689 0.82143 0.82026 0.84154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.87 10.30 71.24 0.73 -1.14 16 2 C 0.36 11.16 7.64 138.78 1.06 12.22 16 3 N -0.54 -21.06 9.18 -183.00 -1.68 -22.74 16 4 C 0.21 8.18 7.05 85.21 0.60 8.78 16 5 S -0.06 -2.61 21.11 -56.49 -1.19 -3.80 16 6 C 0.09 4.50 4.63 71.24 0.33 4.83 16 7 C -0.55 -30.68 9.13 25.60 0.23 -30.45 16 8 H 0.07 3.56 7.71 -2.91 -0.02 3.54 16 9 C 0.02 1.30 5.46 84.65 0.46 1.76 16 10 N -0.91 -52.22 13.29 21.45 0.28 -51.93 16 11 Si 0.97 42.58 29.54 68.60 2.03 44.61 16 12 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 13 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 14 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 15 C -0.15 -5.18 5.79 -20.70 -0.12 -5.30 16 16 C 0.28 9.67 11.05 88.33 0.98 10.64 16 17 N -0.41 -14.56 18.15 19.00 0.34 -14.22 16 18 C 0.29 8.76 6.53 42.19 0.28 9.03 16 19 C -0.09 -2.19 5.58 -20.06 -0.11 -2.31 16 20 C -0.11 -2.55 8.48 22.51 0.19 -2.36 16 21 C -0.13 -2.22 10.03 22.23 0.22 -2.00 16 22 C -0.09 -1.17 10.04 22.32 0.22 -0.94 16 23 C -0.12 -1.65 10.03 22.23 0.22 -1.42 16 24 C -0.07 -1.36 9.61 22.51 0.22 -1.15 16 25 N -0.52 -15.20 9.98 -176.32 -1.76 -16.96 16 26 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.03 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.03 1.82 8.14 -2.40 -0.02 1.80 16 31 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 32 H 0.11 2.89 5.77 -2.91 -0.02 2.87 16 33 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 34 H 0.16 1.00 8.06 -2.91 -0.02 0.98 16 35 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 36 H 0.14 2.47 7.99 -2.91 -0.02 2.45 16 Total: -1.00 -65.56 338.57 4.66 -60.90 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: 1.12 Total: 3.94 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: 5.52 Total: 0.20 kcal Atomic # 7 Polarization: -103.03 SS G_CDS: -2.81 Total: -105.84 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Atomic # 16 Polarization: -2.61 SS G_CDS: -1.19 Total: -3.80 kcal Total: -65.56 4.66 -60.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075279002.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.070 kcal (2) G-P(sol) polarization free energy of solvation -65.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds