Wall clock time and date at job start Fri Apr 10 2020 14:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34225 * 116.99872 * 2 1 4 4 O 1.20825 * 120.00327 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99908 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.47488 * 184.64444 * 5 3 2 7 7 C 1.33225 * 119.99859 * 277.41095 * 6 5 3 8 8 H 1.08003 * 119.99988 * 51.26951 * 7 6 5 9 9 C 1.46792 * 120.00117 * 231.26096 * 7 6 5 10 10 N 1.29308 * 119.99835 * 29.17810 * 9 7 6 11 11 Si 1.86803 * 120.00114 * 209.17108 * 9 7 6 12 12 H 1.48500 * 109.47036 * 5.00808 * 11 9 7 13 13 H 1.48494 * 109.46711 * 125.00389 * 11 9 7 14 14 H 1.48496 * 109.47074 * 245.00442 * 11 9 7 15 15 C 1.34779 * 120.00048 * 97.41382 * 6 5 3 16 16 O 1.21641 * 119.99954 * 182.19800 * 15 6 5 17 17 C 1.46414 * 119.99758 * 2.19758 * 15 6 5 18 18 C 1.38149 * 126.26952 * 241.79818 * 17 15 6 19 19 C 1.39726 * 106.96247 * 180.27876 * 18 17 15 20 20 N 1.48009 * 126.07557 * 179.71666 * 19 18 17 21 21 O 1.31699 * 120.00063 * 179.97438 * 20 19 18 22 22 O 1.31701 * 119.99919 * 0.02562 * 20 19 18 23 23 C 1.35570 * 107.85241 * 359.73828 * 19 18 17 24 24 N 1.34962 * 108.99867 * 0.02562 * 23 19 18 25 25 C 1.46499 * 125.63575 * 180.02562 * 24 23 19 26 26 H 1.08992 * 109.47227 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46836 * 300.00036 * 1 2 3 28 28 H 1.09000 * 109.47152 * 59.99559 * 1 2 3 29 29 H 1.09003 * 109.46890 * 64.64510 * 5 3 2 30 30 H 1.09004 * 109.47166 * 304.64818 * 5 3 2 31 31 H 0.96998 * 120.00462 * 184.96391 * 10 9 7 32 32 H 1.07999 * 126.52006 * 0.02562 * 18 17 15 33 33 H 1.07993 * 125.50230 * 180.02562 * 23 19 18 34 34 H 1.09005 * 109.47225 * 99.29984 * 25 24 23 35 35 H 1.09000 * 109.47257 * 339.29979 * 25 24 23 36 36 H 1.08999 * 109.47052 * 219.29663 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9820 2.6752 0.1123 7 6 4.0239 3.4462 -0.9734 8 1 3.1663 3.5052 -1.6272 9 6 5.2355 4.2158 -1.2808 10 7 6.3925 3.7774 -0.9051 11 14 5.1059 5.8283 -2.2148 12 1 3.6749 6.1667 -2.4220 13 1 5.7615 6.9072 -1.4330 14 1 5.7783 5.6929 -3.5319 15 6 4.3220 3.1835 1.3134 16 8 4.6286 4.3564 1.4127 17 6 4.3224 2.3237 2.4985 18 6 3.5368 2.4827 3.6237 19 6 3.8677 1.4471 4.5015 20 7 3.2807 1.2189 5.8409 21 8 3.6829 0.1994 6.5711 22 8 2.3554 2.0348 6.3021 23 6 4.8223 0.6888 3.9086 24 7 5.1040 1.2070 2.6947 25 6 6.0829 0.6727 1.7448 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 3.9525 0.8542 -0.9279 30 1 3.9594 0.7106 0.8463 31 1 7.1850 4.3191 -1.0441 32 1 2.8087 3.2618 3.7944 33 1 5.2830 -0.1884 4.3382 34 1 5.5687 0.0810 0.9873 35 1 6.7972 0.0427 2.2748 36 1 6.6111 1.4968 1.2652 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609992393.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:33:35 Heat of formation + Delta-G solvation = -36.392101 kcal Electronic energy + Delta-G solvation = -26655.684501 eV Core-core repulsion = 22532.438779 eV Total energy + Delta-G solvation = -4123.245722 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.104 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.27453 -41.54083 -40.15824 -39.55242 -37.59451 -36.42594 -35.43721 -34.58983 -34.25997 -31.30482 -30.30592 -29.00410 -27.83718 -27.06480 -26.03902 -23.62014 -22.39893 -22.02040 -21.00853 -20.00273 -18.96220 -18.76662 -18.69679 -17.76922 -17.46955 -17.34571 -17.18359 -17.03899 -16.83082 -16.27265 -15.94249 -15.44977 -14.88133 -14.58460 -14.54418 -14.27777 -13.98331 -13.77972 -13.63104 -13.40473 -13.06684 -12.95121 -12.89727 -12.77088 -12.49118 -12.24372 -12.21567 -11.84659 -11.81852 -11.69694 -10.97757 -10.77262 -10.58484 -9.88195 -9.68658 -8.55630 -6.10237 -1.50334 0.03821 0.36200 1.06945 1.15149 1.22722 1.35444 1.42008 1.46546 1.56686 2.14992 2.31171 2.68371 2.91715 3.30886 3.49167 3.61476 3.81654 3.86250 3.98923 4.25463 4.26921 4.29833 4.30549 4.31192 4.41874 4.50316 4.66282 4.72711 4.99708 5.21082 5.24650 5.31002 5.57926 5.74435 6.03549 6.57974 6.73123 6.89291 7.23000 7.97216 8.41841 Molecular weight = 311.10amu Principal moments of inertia in cm(-1) A = 0.012663 B = 0.005632 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.686812 B = 4970.370451 C = 6068.890481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.359 6.359 3 C 0.440 3.560 4 O -0.530 6.530 5 C 0.100 3.900 6 N -0.394 5.394 7 C -0.417 4.417 8 H 0.066 0.934 9 C 0.069 3.931 10 N -0.812 5.812 11 Si 0.953 3.047 12 H -0.274 1.274 13 H -0.286 1.286 14 H -0.257 1.257 15 C 0.527 3.473 16 O -0.579 6.579 17 C -0.009 4.009 18 C -0.113 4.113 19 C -0.109 4.109 20 N 0.034 4.966 21 O -0.165 6.165 22 O -0.268 6.268 23 C 0.156 3.844 24 N -0.389 5.389 25 C 0.045 3.955 26 H 0.141 0.859 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.140 0.860 30 H 0.122 0.878 31 H 0.282 0.718 32 H 0.146 0.854 33 H 0.257 0.743 34 H 0.113 0.887 35 H 0.154 0.846 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.218 -14.943 0.829 15.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.275 6.275 3 C 0.282 3.718 4 O -0.418 6.418 5 C -0.024 4.024 6 N -0.111 5.111 7 C -0.544 4.544 8 H 0.084 0.916 9 C -0.150 4.150 10 N -0.440 5.440 11 Si 0.777 3.223 12 H -0.198 1.198 13 H -0.212 1.212 14 H -0.182 1.182 15 C 0.317 3.683 16 O -0.461 6.461 17 C -0.121 4.121 18 C -0.137 4.137 19 C -0.206 4.206 20 N 0.500 4.500 21 O -0.364 6.364 22 O -0.437 6.437 23 C 0.009 3.991 24 N -0.063 5.063 25 C -0.093 4.093 26 H 0.159 0.841 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.158 0.842 30 H 0.139 0.861 31 H 0.093 0.907 32 H 0.163 0.837 33 H 0.273 0.727 34 H 0.131 0.869 35 H 0.172 0.828 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.729 -13.943 -0.042 14.049 hybrid contribution -0.812 1.539 0.135 1.746 sum 0.917 -12.403 0.093 12.437 Atomic orbital electron populations 1.23518 0.75237 1.05779 1.01965 1.86477 1.24690 1.32289 1.84042 1.25039 0.93569 0.81481 0.71731 1.90679 1.67625 1.37857 1.45595 1.21716 0.86344 0.87287 1.07082 1.41659 1.57402 1.07308 1.04736 1.19485 0.97433 1.32281 1.05240 0.91589 1.27397 0.93321 1.00021 0.94289 1.68879 0.99386 1.36259 1.39495 0.85584 0.78830 0.79532 0.78351 1.19814 1.21216 1.18160 1.17466 0.83383 0.86007 0.81493 1.90644 1.52499 1.18507 1.84447 1.20820 0.99903 0.93192 0.98211 1.20946 1.01911 0.99553 0.91319 1.19340 1.09547 1.06468 0.85216 1.49579 0.98620 0.99582 1.02189 1.96181 1.64936 1.17966 1.57351 1.96310 1.26096 1.43441 1.77897 1.22430 0.93917 0.98869 0.83835 1.44604 1.28863 1.18581 1.14251 1.23040 0.91343 1.02003 0.92878 0.84136 0.93022 0.92362 0.84223 0.86082 0.90686 0.83659 0.72746 0.86897 0.82807 0.90076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.56 113.37 1.20 1.83 16 2 O -0.36 -10.18 10.57 -51.36 -0.54 -10.73 16 3 C 0.44 15.90 7.98 71.24 0.57 16.47 16 4 O -0.53 -24.01 15.91 21.97 0.35 -23.66 16 5 C 0.10 3.38 5.25 85.63 0.45 3.83 16 6 N -0.39 -17.91 2.02 -639.53 -1.29 -19.20 16 7 C -0.42 -21.54 8.72 86.72 0.76 -20.79 16 8 H 0.07 3.61 8.05 -2.91 -0.02 3.59 16 9 C 0.07 3.49 4.28 87.30 0.37 3.86 16 10 N -0.81 -40.00 13.32 23.26 0.31 -39.69 16 11 Si 0.95 42.07 29.71 68.60 2.04 44.11 16 12 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 13 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 14 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 15 C 0.53 25.14 6.58 86.37 0.57 25.70 16 16 O -0.58 -33.42 15.96 -4.16 -0.07 -33.49 16 17 C -0.01 -0.33 5.33 40.33 0.21 -0.12 16 18 C -0.11 -4.22 10.64 22.61 0.24 -3.98 16 19 C -0.11 -3.36 7.17 36.12 0.26 -3.11 16 20 N 0.03 1.18 4.98 -47.08 -0.23 0.95 16 21 O -0.17 -5.20 19.76 3.52 0.07 -5.13 16 22 O -0.27 -10.88 19.78 3.51 0.07 -10.81 16 23 C 0.16 3.23 11.04 83.59 0.92 4.15 16 24 N -0.39 -9.58 2.53 -534.71 -1.35 -10.93 16 25 C 0.04 0.77 9.89 127.77 1.26 2.03 16 26 H 0.14 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.05 1.26 8.13 -2.39 -0.02 1.24 16 28 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 29 H 0.14 4.12 8.09 -2.39 -0.02 4.10 16 30 H 0.12 3.25 3.64 -2.38 -0.01 3.24 16 31 H 0.28 13.10 8.27 -92.71 -0.77 12.33 16 32 H 0.15 5.90 8.06 -2.91 -0.02 5.87 16 33 H 0.26 2.24 8.06 -2.91 -0.02 2.22 16 34 H 0.11 1.55 6.27 -2.38 -0.01 1.54 16 35 H 0.15 0.96 8.10 -2.39 -0.02 0.94 16 36 H 0.08 2.07 8.05 -2.39 -0.02 2.05 16 Total: -1.00 -79.29 334.27 7.31 -71.98 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: 1.14 Total: 6.68 kcal Atomic # 6 Polarization: 23.08 SS G_CDS: 6.81 Total: 29.90 kcal Atomic # 7 Polarization: -66.30 SS G_CDS: -2.57 Total: -68.86 kcal Atomic # 8 Polarization: -83.69 SS G_CDS: -0.12 Total: -83.81 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.04 Total: 44.11 kcal Total: -79.29 7.31 -71.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609992393.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.589 kcal (2) G-P(sol) polarization free energy of solvation -79.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds