Wall clock time and date at job start Fri Apr 10 2020 14:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34233 * 116.99800 * 2 1 4 4 O 1.20831 * 119.99874 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00073 * 180.02562 * 3 2 1 6 6 N 1.46494 * 109.47078 * 184.73400 * 5 3 2 7 7 C 1.36847 * 119.99885 * 277.19122 * 6 5 3 8 8 H 1.07999 * 119.99881 * 45.19349 * 7 6 5 9 9 C 1.39051 * 120.00005 * 225.19641 * 7 6 5 10 10 N 1.31368 * 119.99860 * 26.56265 * 9 7 6 11 11 Si 1.86802 * 120.00064 * 206.55552 * 9 7 6 12 12 H 1.48504 * 109.46779 * 65.00238 * 11 9 7 13 13 H 1.48501 * 109.47074 * 184.99916 * 11 9 7 14 14 H 1.48495 * 109.47224 * 305.00428 * 11 9 7 15 15 C 1.34774 * 120.00323 * 97.19273 * 6 5 3 16 16 O 1.21673 * 120.00452 * 182.05795 * 15 6 5 17 17 C 1.47077 * 119.99910 * 2.06352 * 15 6 5 18 18 C 1.37123 * 126.64653 * 241.51783 * 17 15 6 19 19 C 1.40935 * 105.45404 * 180.02562 * 18 17 15 20 20 C 1.47628 * 126.26887 * 180.02562 * 19 18 17 21 21 O 1.21476 * 120.00310 * 359.97438 * 20 19 18 22 22 O 1.34725 * 119.99884 * 179.97438 * 20 19 18 23 23 N 1.32009 * 107.45904 * 359.97438 * 19 18 17 24 24 N 1.28455 * 110.51114 * 0.02562 * 23 19 18 25 25 C 1.46503 * 125.06071 * 179.97438 * 24 23 19 26 26 H 1.08997 * 109.47020 * 300.00311 * 1 2 3 27 27 H 1.08997 * 109.46841 * 60.00585 * 1 2 3 28 28 H 1.09002 * 109.46910 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47230 * 64.72800 * 5 3 2 30 30 H 1.09000 * 109.46890 * 304.73437 * 5 3 2 31 31 H 0.97002 * 119.99415 * 184.96681 * 10 9 7 32 32 H 1.07996 * 127.27595 * 0.02562 * 18 17 15 33 33 H 0.96701 * 117.00052 * 179.97438 * 22 20 19 34 34 H 1.09004 * 109.46920 * 98.68726 * 25 24 23 35 35 H 1.08997 * 109.47512 * 218.68595 * 25 24 23 36 36 H 1.08999 * 109.47115 * 338.69243 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9819 2.6751 0.1135 7 6 4.0282 3.4681 -1.0008 8 1 3.2125 3.4531 -1.7085 9 6 5.1255 4.2930 -1.2220 10 7 6.2973 3.9761 -0.7199 11 14 4.9333 5.8519 -2.2332 12 1 4.0319 6.7946 -1.5230 13 1 6.2626 6.4860 -2.4228 14 1 4.3524 5.5144 -3.5575 15 6 4.3187 3.1823 1.3159 16 8 4.6277 4.3548 1.4168 17 6 4.3127 2.3184 2.5062 18 6 3.5368 2.4734 3.6261 19 6 3.8897 1.4075 4.4780 20 6 3.3269 1.1352 5.8153 21 8 2.4746 1.8678 6.2764 22 8 3.7585 0.0741 6.5245 23 7 4.8150 0.6967 3.8605 24 7 5.0802 1.2047 2.7109 25 6 6.0591 0.6710 1.7605 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.9518 0.8561 -0.9301 30 1 3.9601 0.7091 0.8437 31 1 7.0456 4.5863 -0.8125 32 1 2.8090 3.2485 3.8155 33 1 3.3607 -0.0632 7.3951 34 1 5.5452 0.0774 1.0045 35 1 6.5853 1.4954 1.2794 36 1 6.7751 0.0429 2.2907 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593850608.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:33:46 Heat of formation + Delta-G solvation = -99.801299 kcal Electronic energy + Delta-G solvation = -26734.243537 eV Core-core repulsion = 22608.248186 eV Total energy + Delta-G solvation = -4125.995351 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.104 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.44830 -40.07806 -39.75317 -38.29006 -36.08203 -36.01178 -34.53821 -33.33205 -32.25795 -30.55157 -28.74389 -27.72923 -26.53433 -25.29189 -23.80855 -22.29053 -21.04330 -20.56493 -19.58708 -18.12079 -17.66413 -17.26417 -16.88475 -16.37629 -16.09196 -16.03029 -15.78932 -15.32669 -15.06126 -14.52296 -14.18810 -13.88165 -13.36461 -13.30611 -13.24158 -12.90653 -12.64790 -12.44237 -12.28019 -11.83266 -11.77477 -11.52878 -11.40365 -11.03650 -10.88456 -10.79691 -10.69680 -10.50712 -10.37509 -10.10813 -9.12374 -9.03662 -8.90039 -8.61869 -7.65788 -6.48653 -4.17462 1.43623 2.04403 2.40058 2.65529 2.91982 3.12549 3.24465 3.29669 3.31271 3.39524 3.88589 4.09761 4.50540 4.58656 4.91516 5.12391 5.19356 5.23222 5.24960 5.31354 5.33994 5.45813 5.61142 5.65963 5.71850 5.77481 5.81960 6.02878 6.44294 6.51603 6.68704 6.79308 7.41998 7.83084 7.90257 8.11427 8.20787 8.59231 8.74033 9.22422 9.74996 10.60412 Molecular weight = 311.10amu Principal moments of inertia in cm(-1) A = 0.012924 B = 0.005670 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.023717 B = 4937.456932 C = 6057.361456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.369 6.369 3 C 0.435 3.565 4 O -0.482 6.482 5 C 0.106 3.894 6 N -0.416 5.416 7 C -0.349 4.349 8 H 0.086 0.914 9 C 0.086 3.914 10 N -0.833 5.833 11 Si 0.913 3.087 12 H -0.270 1.270 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.547 3.453 16 O -0.509 6.509 17 C 0.005 3.995 18 C -0.138 4.138 19 C -0.021 4.021 20 C 0.580 3.420 21 O -0.510 6.510 22 O -0.503 6.503 23 N -0.229 5.229 24 N -0.261 5.261 25 C 0.074 3.926 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.095 0.905 29 H 0.120 0.880 30 H 0.093 0.907 31 H 0.272 0.728 32 H 0.167 0.833 33 H 0.411 0.589 34 H 0.092 0.908 35 H 0.114 0.886 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.780 -11.869 4.371 12.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.286 6.286 3 C 0.274 3.726 4 O -0.367 6.367 5 C -0.020 4.020 6 N -0.137 5.137 7 C -0.475 4.475 8 H 0.104 0.896 9 C -0.126 4.126 10 N -0.466 5.466 11 Si 0.739 3.261 12 H -0.195 1.195 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.331 3.669 16 O -0.384 6.384 17 C -0.121 4.121 18 C -0.166 4.166 19 C -0.176 4.176 20 C 0.422 3.578 21 O -0.396 6.396 22 O -0.313 6.313 23 N -0.069 5.069 24 N -0.054 5.054 25 C -0.065 4.065 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.114 0.886 29 H 0.137 0.863 30 H 0.111 0.889 31 H 0.082 0.918 32 H 0.185 0.815 33 H 0.269 0.731 34 H 0.110 0.890 35 H 0.133 0.867 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.934 -11.598 4.149 12.469 hybrid contribution -1.001 1.275 0.112 1.625 sum -2.935 -10.323 4.261 11.547 Atomic orbital electron populations 1.23154 0.77319 1.02966 1.02356 1.86511 1.22811 1.34424 1.84882 1.25017 0.93306 0.81305 0.72929 1.90682 1.66607 1.36128 1.43251 1.21364 0.86585 0.89138 1.04959 1.42855 1.59112 1.05894 1.05869 1.18948 1.03459 1.24023 1.01038 0.89626 1.25208 0.93116 0.98640 0.95673 1.69844 0.99893 1.34329 1.42495 0.86262 0.77632 0.82824 0.79408 1.19550 1.21090 1.19932 1.16833 0.83649 0.86155 0.80215 1.90714 1.48730 1.15781 1.83162 1.22294 0.97873 0.91819 1.00098 1.21649 1.03134 1.00351 0.91496 1.20335 1.02884 0.99233 0.95176 1.19232 0.78112 0.77358 0.83082 1.90906 1.30819 1.48064 1.69820 1.84657 1.65522 1.46720 1.34428 1.73537 1.15381 1.22678 0.95257 1.46106 1.28898 1.18371 1.12074 1.22553 0.90747 1.02475 0.90744 0.92245 0.92151 0.88629 0.86252 0.88929 0.91823 0.81543 0.73098 0.88961 0.86713 0.88121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.56 101.05 1.07 1.52 16 2 O -0.37 -5.82 10.57 -39.27 -0.41 -6.23 16 3 C 0.43 8.23 7.98 36.00 0.29 8.52 16 4 O -0.48 -10.81 15.94 -18.75 -0.30 -11.11 16 5 C 0.11 1.94 5.27 -5.20 -0.03 1.92 16 6 N -0.42 -9.69 2.08 -117.45 -0.24 -9.93 16 7 C -0.35 -8.98 8.77 -15.01 -0.13 -9.11 16 8 H 0.09 2.22 7.96 -52.49 -0.42 1.80 16 9 C 0.09 2.22 4.11 -17.45 -0.07 2.15 16 10 N -0.83 -21.85 12.54 55.50 0.70 -21.16 16 11 Si 0.91 20.97 29.63 -169.99 -5.04 15.93 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 13 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 15 C 0.55 13.36 6.41 -12.68 -0.08 13.27 16 16 O -0.51 -14.55 15.38 5.21 0.08 -14.47 16 17 C 0.01 0.10 5.36 -82.47 -0.44 -0.34 16 18 C -0.14 -2.73 10.75 -38.97 -0.42 -3.15 16 19 C -0.02 -0.38 7.13 -82.94 -0.59 -0.97 16 20 C 0.58 9.16 8.34 34.56 0.29 9.44 16 21 O -0.51 -8.99 17.70 -19.25 -0.34 -9.33 16 22 O -0.50 -6.02 13.44 -40.56 -0.55 -6.56 16 23 N -0.23 -3.96 11.97 33.32 0.40 -3.56 16 24 N -0.26 -4.56 3.15 -64.20 -0.20 -4.76 16 25 C 0.07 1.02 10.07 59.85 0.60 1.62 16 26 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 27 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 28 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.12 1.93 8.10 -51.93 -0.42 1.51 16 30 H 0.09 1.52 3.59 -51.93 -0.19 1.34 16 31 H 0.27 6.91 8.31 -40.82 -0.34 6.58 16 32 H 0.17 3.22 8.06 -52.49 -0.42 2.80 16 33 H 0.41 2.59 9.11 45.56 0.42 3.00 16 34 H 0.09 1.08 6.23 -51.93 -0.32 0.75 16 35 H 0.11 1.82 8.01 -51.93 -0.42 1.41 16 36 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 330.40 15.07 4.98 4.98 Total: -1.00 -35.12 330.40 -3.05 -38.17 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -2.60 Total: 3.17 kcal Atomic # 6 Polarization: 24.39 SS G_CDS: 0.48 Total: 24.87 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.65 Total: -39.42 kcal Atomic # 8 Polarization: -46.18 SS G_CDS: -1.52 Total: -47.70 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.04 Total: 15.93 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.12 -3.05 -38.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593850608.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.634 kcal (2) G-P(sol) polarization free energy of solvation -35.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds