Wall clock time and date at job start Fri Apr 10 2020 14:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34955 * 119.70374 * 2 1 4 4 C 1.38391 * 119.01019 * 180.02562 * 3 2 1 5 5 C 1.47215 * 120.74736 * 179.97438 * 4 3 2 6 6 O 1.21656 * 119.99955 * 313.95498 * 5 4 3 7 7 N 1.34776 * 120.00393 * 133.95630 * 5 4 3 8 8 C 1.36952 * 120.00034 * 4.62381 * 7 5 4 9 9 H 1.08004 * 119.99986 * 313.93035 * 8 7 5 10 10 C 1.38990 * 120.00132 * 133.92325 * 8 7 5 11 11 N 1.31407 * 119.99773 * 170.47640 * 10 8 7 12 12 Si 1.86797 * 119.99979 * 350.48065 * 10 8 7 13 13 H 1.48501 * 109.47236 * 95.23352 * 12 10 8 14 14 H 1.48499 * 109.46941 * 215.22987 * 12 10 8 15 15 H 1.48498 * 109.47001 * 335.22804 * 12 10 8 16 16 C 1.46498 * 120.00514 * 184.62277 * 7 5 4 17 17 C 1.53004 * 109.46911 * 89.99729 * 16 7 5 18 18 C 1.50707 * 109.47069 * 180.02562 * 17 16 7 19 19 O 1.20828 * 119.99918 * 359.97438 * 18 17 16 20 20 O 1.34225 * 120.00157 * 180.02562 * 18 17 16 21 21 C 1.42142 * 118.51275 * 0.02562 * 4 3 2 22 22 O 1.35011 * 120.33401 * 179.97438 * 21 4 3 23 23 N 1.32208 * 119.32871 * 0.02562 * 21 4 3 24 24 C 1.33325 * 120.94389 * 359.97074 * 23 21 4 25 25 O 1.21907 * 119.19668 * 180.02562 * 24 23 21 26 26 H 1.08994 * 109.47090 * 89.99512 * 1 2 3 27 27 H 1.08996 * 109.46962 * 210.00069 * 1 2 3 28 28 H 1.08998 * 109.46780 * 329.99492 * 1 2 3 29 29 H 1.07999 * 120.49866 * 359.72842 * 3 2 1 30 30 H 0.97006 * 119.99876 * 185.00939 * 11 10 8 31 31 H 1.08999 * 109.47669 * 210.00238 * 16 7 5 32 32 H 1.09007 * 109.46691 * 330.00404 * 16 7 5 33 33 H 1.08997 * 109.47593 * 300.00200 * 17 16 7 34 34 H 1.08998 * 109.46839 * 60.00534 * 17 16 7 35 35 H 0.96700 * 117.00306 * 179.97438 * 20 18 17 36 36 H 0.96704 * 113.99609 * 175.70060 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1338 1.1722 0.0000 4 6 3.5176 1.1555 -0.0005 5 6 4.2855 2.4115 -0.0011 6 8 3.9786 3.3117 -0.7597 7 7 5.3286 2.5641 0.8386 8 6 5.7335 1.5183 1.6248 9 1 5.0033 0.9373 2.1687 10 6 7.0840 1.2046 1.7226 11 7 7.4923 0.3297 2.6140 12 14 8.3184 2.0267 0.5870 13 1 8.9112 3.2047 1.2699 14 1 9.3932 1.0617 0.2426 15 1 7.6323 2.4673 -0.6541 16 6 6.0293 3.8486 0.9105 17 6 5.3725 4.7289 1.9757 18 6 6.0929 6.0506 2.0492 19 8 7.0354 6.2660 1.3245 20 8 5.6883 6.9880 2.9206 21 6 4.1810 -0.1017 -0.0016 22 8 5.5298 -0.1609 -0.0027 23 7 3.4638 -1.2123 -0.0026 24 6 2.1313 -1.1679 -0.0020 25 8 1.5015 -2.2117 -0.0025 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 1.5971 2.1094 -0.0044 30 1 8.4408 0.1643 2.7321 31 1 7.0736 3.6787 1.1729 32 1 5.9744 4.3471 -0.0573 33 1 4.3283 4.8989 1.7132 34 1 5.4274 4.2304 2.9434 35 1 6.1818 7.8195 2.9315 36 1 5.8841 -1.0583 0.0628 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600929612.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:33:47 Heat of formation + Delta-G solvation = -160.177860 kcal Electronic energy + Delta-G solvation = -26689.389749 eV Core-core repulsion = 22560.776274 eV Total energy + Delta-G solvation = -4128.613475 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.104 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.82485 -41.39108 -40.64027 -39.31005 -37.87952 -37.24171 -36.82232 -35.51051 -34.14271 -32.98805 -31.74663 -28.48954 -26.92501 -26.67355 -25.43522 -24.39978 -22.25778 -21.29915 -20.65747 -19.61319 -19.21729 -18.95663 -18.23448 -17.83136 -17.54931 -17.42439 -16.98136 -16.51734 -16.43690 -15.91752 -15.60595 -15.22694 -15.00012 -14.73778 -14.64115 -14.39836 -14.27534 -14.12511 -13.89203 -13.43594 -13.38171 -12.99555 -12.64830 -12.54892 -12.43950 -12.08228 -12.02476 -11.73043 -11.65347 -11.26284 -11.12261 -10.80708 -10.53416 -9.73555 -9.56902 -8.38452 -6.10389 -0.26703 0.38641 1.19058 1.24429 1.36772 1.38566 1.45656 1.83954 2.05125 2.21466 2.47004 2.67101 2.77423 3.03375 3.29347 3.65279 3.80581 3.85750 3.95499 4.23780 4.36297 4.40393 4.48393 4.48851 4.62312 4.71624 4.81202 4.91634 5.12086 5.29548 5.48394 5.59761 6.08282 6.21088 6.37189 6.71553 6.98767 6.99990 7.11076 7.34028 7.68571 8.71274 Molecular weight = 311.10amu Principal moments of inertia in cm(-1) A = 0.015338 B = 0.005524 C = 0.004439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.063278 B = 5067.325631 C = 6306.804974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.516 5.516 3 C 0.269 3.731 4 C -0.294 4.294 5 C 0.555 3.445 6 O -0.600 6.600 7 N -0.462 5.462 8 C -0.294 4.294 9 H 0.083 0.917 10 C 0.063 3.937 11 N -0.895 5.895 12 Si 0.913 3.087 13 H -0.279 1.279 14 H -0.291 1.291 15 H -0.271 1.271 16 C 0.114 3.886 17 C -0.117 4.117 18 C 0.494 3.506 19 O -0.555 6.555 20 O -0.505 6.505 21 C 0.492 3.508 22 O -0.398 6.398 23 N -0.656 5.656 24 C 0.645 3.355 25 O -0.585 6.585 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.133 0.867 29 H 0.235 0.765 30 H 0.277 0.723 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.126 0.874 34 H 0.123 0.877 35 H 0.428 0.572 36 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.965 8.732 -0.240 13.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.229 5.229 3 C 0.129 3.871 4 C -0.305 4.305 5 C 0.345 3.655 6 O -0.486 6.486 7 N -0.181 5.181 8 C -0.422 4.422 9 H 0.101 0.899 10 C -0.142 4.142 11 N -0.532 5.532 12 Si 0.743 3.257 13 H -0.206 1.206 14 H -0.218 1.218 15 H -0.196 1.196 16 C -0.009 4.009 17 C -0.155 4.155 18 C 0.338 3.662 19 O -0.447 6.447 20 O -0.318 6.318 21 C 0.294 3.706 22 O -0.190 6.190 23 N -0.418 5.418 24 C 0.348 3.652 25 O -0.464 6.464 26 H 0.115 0.885 27 H 0.103 0.897 28 H 0.152 0.848 29 H 0.251 0.749 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.144 0.856 34 H 0.141 0.859 35 H 0.290 0.710 36 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -10.061 7.790 -0.793 12.749 hybrid contribution 1.622 0.557 -0.287 1.739 sum -8.439 8.347 -1.079 11.919 Atomic orbital electron populations 1.22601 0.73081 1.06915 1.05892 1.46127 1.12270 1.06173 1.58286 1.23075 0.90283 0.91842 0.81851 1.19463 0.93568 0.92888 1.24621 1.17611 0.82632 0.85703 0.79534 1.90685 1.71951 1.44310 1.41632 1.43536 1.29134 1.09706 1.35770 1.18568 0.92930 1.07695 1.23032 0.89913 1.25493 0.98331 0.94842 0.95560 1.69669 1.16760 1.33752 1.33040 0.86355 0.80131 0.77803 0.81455 1.20569 1.21806 1.19622 1.21344 0.95376 0.85199 0.99016 1.21594 1.01810 0.88855 1.03262 1.23397 0.80976 0.86226 0.75602 1.90714 1.29845 1.80786 1.43327 1.84495 1.60814 1.29192 1.57334 1.20565 0.85319 0.88328 0.76423 1.85785 1.14135 1.35981 1.83055 1.69555 1.06092 1.28873 1.37263 1.17554 0.84847 0.83682 0.79164 1.90890 1.66800 1.31782 1.56961 0.88543 0.89683 0.84842 0.74871 0.91270 0.92627 0.90962 0.85567 0.85871 0.71024 0.74053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.84 10.35 127.77 1.32 2.16 16 2 N -0.52 -13.43 2.96 -679.87 -2.01 -15.45 16 3 C 0.27 6.58 10.08 84.25 0.85 7.43 16 4 C -0.29 -10.15 5.18 -19.91 -0.10 -10.25 16 5 C 0.56 21.68 7.07 86.60 0.61 22.30 16 6 O -0.60 -24.64 16.56 -4.21 -0.07 -24.71 16 7 N -0.46 -19.04 2.08 -639.44 -1.33 -20.37 16 8 C -0.29 -13.24 6.05 84.07 0.51 -12.73 16 9 H 0.08 4.05 7.27 -2.91 -0.02 4.03 16 10 C 0.06 2.99 4.34 84.94 0.37 3.36 16 11 N -0.89 -45.07 13.95 21.67 0.30 -44.77 16 12 Si 0.91 41.13 24.69 68.60 1.69 42.82 16 13 H -0.28 -12.62 6.89 99.48 0.69 -11.93 16 14 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 15 H -0.27 -12.65 6.89 99.48 0.69 -11.97 16 16 C 0.11 4.48 3.29 86.38 0.28 4.76 16 17 C -0.12 -3.56 6.14 29.85 0.18 -3.37 16 18 C 0.49 14.41 8.33 71.24 0.59 15.01 16 19 O -0.56 -20.20 16.74 21.96 0.37 -19.83 16 20 O -0.50 -10.40 13.42 -51.37 -0.69 -11.09 16 21 C 0.49 18.88 6.83 85.61 0.58 19.47 16 22 O -0.40 -15.80 9.00 -82.83 -0.75 -16.55 16 23 N -0.66 -26.41 10.38 -438.17 -4.55 -30.96 16 24 C 0.65 24.20 8.32 179.61 1.49 25.69 16 25 O -0.58 -25.09 16.67 -5.01 -0.08 -25.18 16 26 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.08 1.58 7.36 -2.39 -0.02 1.56 16 28 H 0.13 0.82 8.02 -2.39 -0.02 0.80 16 29 H 0.24 3.28 8.05 -2.91 -0.02 3.26 16 30 H 0.28 13.41 8.32 -92.70 -0.77 12.63 16 31 H 0.06 2.40 3.43 -2.39 -0.01 2.39 16 32 H 0.07 2.99 7.32 -2.38 -0.02 2.98 16 33 H 0.13 3.35 8.14 -2.39 -0.02 3.33 16 34 H 0.12 3.61 8.14 -2.39 -0.02 3.59 16 35 H 0.43 4.80 9.10 -74.06 -0.67 4.12 16 36 H 0.40 13.95 8.98 -74.05 -0.67 13.28 16 Total: -1.00 -74.81 315.60 -0.62 -75.43 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -0.20 Total: 16.84 kcal Atomic # 6 Polarization: 67.12 SS G_CDS: 6.70 Total: 73.82 kcal Atomic # 7 Polarization: -103.96 SS G_CDS: -7.59 Total: -111.55 kcal Atomic # 8 Polarization: -96.14 SS G_CDS: -1.22 Total: -97.36 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 1.69 Total: 42.82 kcal Total: -74.81 -0.62 -75.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600929612.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.753 kcal (2) G-P(sol) polarization free energy of solvation -74.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds