Wall clock time and date at job start Fri Apr 10 2020 14:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34230 * 116.99926 * 2 1 4 4 O 1.20836 * 119.99713 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00091 * 180.02562 * 3 2 1 6 6 N 1.46506 * 109.47110 * 180.02562 * 5 3 2 7 7 C 1.36905 * 119.99819 * 267.56670 * 6 5 3 8 8 H 1.07997 * 119.99822 * 142.58666 * 7 6 5 9 9 C 1.39023 * 119.99819 * 322.58426 * 7 6 5 10 10 N 1.31378 * 119.99681 * 160.03927 * 9 7 6 11 11 Si 1.86800 * 119.99892 * 340.02993 * 9 7 6 12 12 H 1.48502 * 109.46622 * 95.31825 * 11 9 7 13 13 H 1.48500 * 109.47109 * 215.31250 * 11 9 7 14 14 H 1.48499 * 109.47317 * 335.31744 * 11 9 7 15 15 C 1.34780 * 120.00005 * 87.56267 * 6 5 3 16 16 O 1.21622 * 119.99794 * 5.28433 * 15 6 5 17 17 C 1.47425 * 119.99805 * 185.28519 * 15 6 5 18 18 C 1.39778 * 120.18756 * 316.36024 * 17 15 6 19 19 C 1.37967 * 119.87690 * 179.78804 * 18 17 15 20 20 F 1.35101 * 119.87428 * 180.23086 * 19 18 17 21 21 C 1.38744 * 120.25056 * 0.47087 * 19 18 17 22 22 C 1.38070 * 120.38003 * 359.78510 * 21 19 18 23 23 C 1.38661 * 120.11659 * 359.97438 * 22 21 19 24 24 O 1.35711 * 120.12627 * 179.97438 * 23 22 21 25 25 C 1.42904 * 116.99841 * 0.02562 * 24 23 22 26 26 H 1.09003 * 109.47629 * 59.99511 * 1 2 3 27 27 H 1.09006 * 109.47031 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47107 * 299.99273 * 1 2 3 29 29 H 1.08997 * 109.47229 * 60.00425 * 5 3 2 30 30 H 1.08995 * 109.47051 * 300.00420 * 5 3 2 31 31 H 0.97007 * 119.99686 * 180.02562 * 10 9 7 32 32 H 1.08001 * 120.05788 * 0.02562 * 18 17 15 33 33 H 1.08008 * 119.80703 * 179.76029 * 21 19 18 34 34 H 1.08005 * 119.94242 * 179.97438 * 22 21 19 35 35 H 1.08998 * 109.46585 * 180.02562 * 25 24 23 36 36 H 1.08998 * 109.47009 * 300.00228 * 25 24 23 37 37 H 1.08997 * 109.46750 * 60.00505 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9816 2.6799 0.0002 7 6 4.2234 3.3228 -1.1841 8 1 3.9418 4.3585 -1.3036 9 6 4.8316 2.6423 -2.2329 10 7 4.7182 3.0930 -3.4617 11 14 5.8102 1.0875 -1.8947 12 1 4.9423 -0.0990 -2.1051 13 1 6.9706 1.0221 -2.8190 14 1 6.2953 1.1033 -0.4913 15 6 4.1256 3.3394 1.1667 16 8 4.0048 2.7445 2.2206 17 6 4.4294 4.7820 1.1652 18 6 5.3864 5.2978 0.2865 19 6 5.6625 6.6496 0.2875 20 9 6.5841 7.1487 -0.5650 21 6 5.0010 7.4975 1.1640 22 6 4.0576 6.9985 2.0400 23 6 3.7644 5.6433 2.0488 24 8 2.8375 5.1525 2.9101 25 6 2.2008 6.0896 3.7811 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 3.9557 0.7811 -0.8908 30 1 3.9563 0.7806 0.8891 31 1 5.1423 2.6179 -4.1935 32 1 5.9058 4.6399 -0.3945 33 1 5.2256 8.5540 1.1614 34 1 3.5472 7.6649 2.7196 35 1 1.4849 5.5673 4.4157 36 1 2.9519 6.5748 4.4043 37 1 1.6802 6.8413 3.1878 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000150733211.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:33:12 Heat of formation + Delta-G solvation = -144.893006 kcal Electronic energy + Delta-G solvation = -26681.172346 eV Core-core repulsion = 22533.301710 eV Total energy + Delta-G solvation = -4147.870636 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.105 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -48.33050 -40.26348 -39.74006 -38.37965 -36.66102 -35.88849 -34.90980 -32.11379 -31.31166 -29.35570 -28.81560 -27.07386 -26.49888 -25.20396 -23.19438 -21.85085 -20.91492 -19.50644 -18.23429 -17.46722 -17.33213 -16.92249 -16.45397 -16.06576 -15.72559 -15.58947 -15.38480 -15.07561 -14.94584 -14.40088 -14.23453 -13.80673 -13.58792 -13.20769 -12.97158 -12.79901 -12.60750 -12.38459 -12.31989 -11.96654 -11.84940 -11.58789 -11.55069 -11.05719 -10.79224 -10.67249 -10.51546 -10.34707 -10.12833 -9.91034 -9.41800 -8.86744 -8.63090 -8.05214 -7.69593 -6.59390 -4.21108 1.32176 1.64216 2.83850 2.93094 2.97230 3.14843 3.17515 3.54111 3.55729 3.95633 4.05264 4.23074 4.66959 4.83108 5.00873 5.14718 5.23649 5.28328 5.36263 5.43660 5.44504 5.52307 5.59050 5.61430 5.66808 5.78257 5.85989 6.04758 6.18068 6.41702 6.52246 6.59661 6.83447 7.05465 7.15559 7.65996 7.88297 8.12812 8.38251 8.76198 9.12371 9.43353 10.49734 Molecular weight = 311.10amu Principal moments of inertia in cm(-1) A = 0.011584 B = 0.007042 C = 0.004882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.629798 B = 3975.001715 C = 5733.569705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.369 6.369 3 C 0.448 3.552 4 O -0.486 6.486 5 C 0.109 3.891 6 N -0.443 5.443 7 C -0.348 4.348 8 H 0.112 0.888 9 C 0.066 3.934 10 N -0.846 5.846 11 Si 0.858 3.142 12 H -0.268 1.268 13 H -0.279 1.279 14 H -0.253 1.253 15 C 0.545 3.455 16 O -0.569 6.569 17 C -0.101 4.101 18 C -0.051 4.051 19 C 0.043 3.957 20 F -0.143 7.143 21 C -0.104 4.104 22 C -0.201 4.201 23 C 0.157 3.843 24 O -0.290 6.290 25 C 0.026 3.974 26 H 0.059 0.941 27 H 0.094 0.906 28 H 0.058 0.942 29 H 0.107 0.893 30 H 0.115 0.885 31 H 0.278 0.722 32 H 0.167 0.833 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.097 0.903 36 H 0.053 0.947 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.526 2.330 7.885 8.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.286 6.286 3 C 0.288 3.712 4 O -0.370 6.370 5 C -0.016 4.016 6 N -0.164 5.164 7 C -0.475 4.475 8 H 0.130 0.870 9 C -0.143 4.143 10 N -0.480 5.480 11 Si 0.685 3.315 12 H -0.195 1.195 13 H -0.205 1.205 14 H -0.177 1.177 15 C 0.335 3.665 16 O -0.452 6.452 17 C -0.105 4.105 18 C -0.070 4.070 19 C 0.024 3.976 20 F -0.122 7.122 21 C -0.123 4.123 22 C -0.220 4.220 23 C 0.109 3.891 24 O -0.202 6.202 25 C -0.070 4.070 26 H 0.078 0.922 27 H 0.113 0.887 28 H 0.077 0.923 29 H 0.124 0.876 30 H 0.133 0.867 31 H 0.089 0.911 32 H 0.185 0.815 33 H 0.151 0.849 34 H 0.153 0.847 35 H 0.115 0.885 36 H 0.072 0.928 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.824 2.140 8.181 8.915 hybrid contribution 0.202 -0.286 -0.396 0.529 sum -2.622 1.853 7.785 8.421 Atomic orbital electron populations 1.23137 0.77520 1.02825 1.02266 1.86517 1.22686 1.34459 1.84965 1.24697 0.92784 0.81263 0.72433 1.90633 1.66516 1.36197 1.43695 1.21365 0.87036 0.88090 1.05112 1.43214 1.58278 1.08383 1.06525 1.19201 1.40351 0.99415 0.88533 0.87045 1.25350 0.96205 0.98101 0.94643 1.69731 1.39333 1.40259 0.98640 0.87197 0.81002 0.83049 0.80296 1.19451 1.20506 1.17661 1.17739 0.79185 0.86281 0.83314 1.90676 1.54753 1.68493 1.31290 1.18917 0.99730 0.93973 0.97849 1.21634 0.95782 0.93712 0.95848 1.17431 0.93785 0.92357 0.94050 1.91469 1.63985 1.87835 1.68869 1.20891 0.96435 0.99772 0.95206 1.20840 1.03290 0.93770 1.04096 1.18987 0.89174 0.91230 0.89670 1.86280 1.50959 1.35721 1.47239 1.23060 0.97132 0.93751 0.93019 0.92199 0.88717 0.92321 0.87577 0.86739 0.91102 0.81548 0.84925 0.84686 0.88468 0.92824 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.55 101.05 1.07 1.60 16 2 O -0.37 -6.92 10.57 -39.26 -0.41 -7.34 16 3 C 0.45 9.99 8.01 36.01 0.29 10.27 16 4 O -0.49 -12.15 16.15 -18.76 -0.30 -12.45 16 5 C 0.11 2.44 4.71 -5.19 -0.02 2.41 16 6 N -0.44 -10.86 1.69 -117.32 -0.20 -11.06 16 7 C -0.35 -8.93 7.11 -15.00 -0.11 -9.03 16 8 H 0.11 3.07 6.56 -52.49 -0.34 2.73 16 9 C 0.07 1.67 5.33 -17.45 -0.09 1.57 16 10 N -0.85 -22.56 13.95 55.50 0.77 -21.78 16 11 Si 0.86 18.81 24.87 -169.99 -4.23 14.58 16 12 H -0.27 -5.59 6.70 56.52 0.38 -5.21 16 13 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 14 H -0.25 -5.47 7.11 56.52 0.40 -5.07 16 15 C 0.54 13.30 6.99 -12.52 -0.09 13.22 16 16 O -0.57 -14.66 15.87 -8.74 -0.14 -14.80 16 17 C -0.10 -2.20 5.24 -104.85 -0.55 -2.75 16 18 C -0.05 -1.03 7.73 -39.11 -0.30 -1.33 16 19 C 0.04 0.78 7.28 -39.49 -0.29 0.49 16 20 F -0.14 -2.59 17.26 2.25 0.04 -2.55 16 21 C -0.10 -1.58 10.01 -39.46 -0.39 -1.97 16 22 C -0.20 -3.07 9.03 -39.49 -0.36 -3.43 16 23 C 0.16 3.01 6.67 -38.70 -0.26 2.75 16 24 O -0.29 -5.53 9.37 -32.83 -0.31 -5.84 16 25 C 0.03 0.32 9.81 101.05 0.99 1.31 16 26 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 27 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.06 0.84 8.13 -51.93 -0.42 0.41 16 29 H 0.11 2.32 3.18 -51.93 -0.17 2.16 16 30 H 0.11 2.37 7.43 -51.93 -0.39 1.98 16 31 H 0.28 6.89 8.31 -40.82 -0.34 6.55 16 32 H 0.17 3.58 6.43 -52.49 -0.34 3.24 16 33 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 34 H 0.14 1.57 6.29 -52.48 -0.33 1.24 16 35 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.05 0.55 7.66 -51.93 -0.40 0.16 16 37 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 LS Contribution 323.26 15.07 4.87 4.87 Total: -1.00 -32.11 323.26 -3.65 -35.76 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -3.63 Total: 5.50 kcal Atomic # 6 Polarization: 15.22 SS G_CDS: -0.11 Total: 15.11 kcal Atomic # 7 Polarization: -33.42 SS G_CDS: 0.58 Total: -32.84 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -1.16 Total: -40.43 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.04 Total: -2.55 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -4.23 Total: 14.58 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.11 -3.65 -35.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150733211.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.133 kcal (2) G-P(sol) polarization free energy of solvation -32.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds