Wall clock time and date at job start Fri Apr 10 2020 14:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34225 * 116.99764 * 2 1 4 4 O 1.20829 * 120.00036 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99861 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.47191 * 179.97438 * 5 3 2 7 7 C 1.36885 * 120.00077 * 269.99562 * 6 5 3 8 8 H 1.08004 * 120.00430 * 138.95812 * 7 6 5 9 9 C 1.39039 * 120.00131 * 318.96546 * 7 6 5 10 10 N 1.31375 * 120.00115 * 161.85657 * 9 7 6 11 11 Si 1.86805 * 119.99783 * 341.85545 * 9 7 6 12 12 H 1.48501 * 109.46790 * 95.26127 * 11 9 7 13 13 H 1.48495 * 109.46796 * 215.26321 * 11 9 7 14 14 H 1.48495 * 109.46856 * 335.26247 * 11 9 7 15 15 C 1.34776 * 120.00290 * 89.99545 * 6 5 3 16 16 O 1.21607 * 120.00021 * 3.47772 * 15 6 5 17 17 C 1.47622 * 120.00408 * 183.46913 * 15 6 5 18 18 C 1.39721 * 120.10009 * 327.69402 * 17 15 6 19 19 C 1.37871 * 119.97459 * 180.02562 * 18 17 15 20 20 C 1.38549 * 120.18454 * 0.03258 * 19 18 17 21 21 F 1.35096 * 119.89708 * 179.97438 * 20 19 18 22 22 C 1.39100 * 120.20892 * 359.97438 * 20 19 18 23 23 O 1.35963 * 119.98848 * 179.97438 * 22 20 19 24 24 C 1.42903 * 116.99740 * 180.02562 * 23 22 20 25 25 C 1.38306 * 120.02246 * 0.24269 * 22 20 19 26 26 H 1.09005 * 109.47566 * 60.00502 * 1 2 3 27 27 H 1.09005 * 109.47645 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47561 * 300.00249 * 1 2 3 29 29 H 1.09000 * 109.47327 * 59.99694 * 5 3 2 30 30 H 1.09000 * 109.46870 * 299.99632 * 5 3 2 31 31 H 0.97001 * 119.99851 * 180.02562 * 10 9 7 32 32 H 1.07997 * 120.01490 * 0.02562 * 18 17 15 33 33 H 1.07998 * 119.90699 * 179.97438 * 19 18 17 34 34 H 1.09004 * 109.46847 * 180.02562 * 24 23 22 35 35 H 1.08996 * 109.47236 * 60.00120 * 24 23 22 36 36 H 1.08999 * 109.47294 * 299.99893 * 24 23 22 37 37 H 1.07993 * 120.09030 * 179.74503 * 25 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0006 6 7 3.9816 2.6797 -0.0011 7 6 4.1753 3.3358 -1.1868 8 1 3.8361 4.3547 -1.3019 9 6 4.8086 2.6904 -2.2430 10 7 4.6867 3.1562 -3.4654 11 14 5.8328 1.1611 -1.9239 12 1 5.0022 -0.0480 -2.1553 13 1 6.9980 1.1449 -2.8444 14 1 6.3122 1.1708 -0.5186 15 6 4.1730 3.3263 1.1659 16 8 4.0627 2.7271 2.2183 17 6 4.5168 4.7619 1.1666 18 6 5.2778 5.3008 0.1260 19 6 5.5978 6.6418 0.1295 20 6 5.1675 7.4580 1.1631 21 9 5.4848 8.7711 1.1610 22 6 4.4096 6.9296 2.2030 23 8 3.9900 7.7345 3.2152 24 6 3.2161 7.1249 4.2504 25 6 4.0874 5.5846 2.2104 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 3.9556 0.7809 -0.8908 30 1 3.9563 0.7806 0.8892 31 1 5.1282 2.7057 -4.2023 32 1 5.6152 4.6670 -0.6808 33 1 6.1865 7.0570 -0.6751 34 1 2.9466 7.8762 4.9928 35 1 3.8010 6.3375 4.7256 36 1 2.3099 6.6964 3.8222 37 1 3.5025 5.1724 3.0192 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155670982.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:33:28 Heat of formation + Delta-G solvation = -146.064342 kcal Electronic energy + Delta-G solvation = -26258.393604 eV Core-core repulsion = 22110.472175 eV Total energy + Delta-G solvation = -4147.921429 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.105 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.46934 -40.28819 -39.72663 -38.74062 -36.70700 -35.98949 -35.10472 -32.25727 -30.68819 -30.05925 -28.79697 -27.29150 -26.43064 -25.31683 -22.87376 -22.08460 -21.01308 -19.64446 -18.42161 -17.50379 -17.19975 -17.13528 -16.39919 -16.20053 -15.93821 -15.88921 -15.45854 -15.15626 -14.79756 -14.42520 -14.11927 -13.89984 -13.87527 -13.38638 -13.15286 -12.86971 -12.69013 -12.43779 -12.08569 -11.96614 -11.91421 -11.67594 -11.40994 -11.17684 -10.98378 -10.81695 -10.55637 -10.42869 -10.20448 -9.98418 -9.52344 -8.97161 -8.54473 -8.13384 -7.79854 -6.70156 -4.36201 1.23246 1.70513 2.74176 2.86001 2.88941 3.07402 3.10076 3.33979 3.48211 3.86653 4.02016 4.21805 4.53991 4.73033 5.08332 5.18368 5.26457 5.28540 5.34297 5.37643 5.44160 5.51534 5.57658 5.59583 5.71390 5.74825 5.78979 5.85031 6.27764 6.38121 6.73212 6.75564 6.89745 6.94171 7.07779 7.53207 7.75660 8.01694 8.28230 8.62383 8.97470 9.28735 10.37048 Molecular weight = 311.10amu Principal moments of inertia in cm(-1) A = 0.013565 B = 0.005437 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.590779 B = 5148.267003 C = 6506.238168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.369 6.369 3 C 0.449 3.551 4 O -0.487 6.487 5 C 0.106 3.894 6 N -0.439 5.439 7 C -0.351 4.351 8 H 0.117 0.883 9 C 0.067 3.933 10 N -0.843 5.843 11 Si 0.861 3.139 12 H -0.267 1.267 13 H -0.277 1.277 14 H -0.253 1.253 15 C 0.536 3.464 16 O -0.585 6.585 17 C -0.073 4.073 18 C -0.069 4.069 19 C -0.135 4.135 20 C 0.077 3.923 21 F -0.139 7.139 22 C 0.071 3.929 23 O -0.315 6.315 24 C 0.027 3.973 25 C -0.136 4.136 26 H 0.060 0.940 27 H 0.095 0.905 28 H 0.058 0.942 29 H 0.107 0.893 30 H 0.116 0.884 31 H 0.280 0.720 32 H 0.180 0.820 33 H 0.143 0.857 34 H 0.098 0.902 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.415 -0.346 6.548 6.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.286 6.286 3 C 0.289 3.711 4 O -0.372 6.372 5 C -0.019 4.019 6 N -0.159 5.159 7 C -0.478 4.478 8 H 0.134 0.866 9 C -0.143 4.143 10 N -0.476 5.476 11 Si 0.686 3.314 12 H -0.194 1.194 13 H -0.203 1.203 14 H -0.176 1.176 15 C 0.327 3.673 16 O -0.469 6.469 17 C -0.076 4.076 18 C -0.087 4.087 19 C -0.154 4.154 20 C 0.057 3.943 21 F -0.118 7.118 22 C 0.025 3.975 23 O -0.229 6.229 24 C -0.068 4.068 25 C -0.156 4.156 26 H 0.079 0.921 27 H 0.114 0.886 28 H 0.077 0.923 29 H 0.124 0.876 30 H 0.134 0.866 31 H 0.091 0.909 32 H 0.197 0.803 33 H 0.160 0.840 34 H 0.116 0.884 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.628 -0.101 6.854 7.046 hybrid contribution -0.026 -0.712 -0.144 0.727 sum -1.654 -0.814 6.710 6.959 Atomic orbital electron populations 1.23152 0.77382 1.02922 1.02309 1.86516 1.22779 1.34372 1.84892 1.24642 0.92738 0.81285 0.72409 1.90631 1.66553 1.36224 1.43810 1.21397 0.87051 0.88167 1.05237 1.43195 1.57751 1.08438 1.06490 1.19281 1.39117 1.01275 0.88098 0.86583 1.25403 0.96162 0.98081 0.94631 1.69708 1.38774 1.40434 0.98678 0.87129 0.81145 0.82737 0.80360 1.19371 1.20322 1.17612 1.18086 0.79089 0.86819 0.83279 1.90657 1.56323 1.68374 1.31564 1.19611 0.99428 0.93669 0.94885 1.22294 0.94433 0.94194 0.97813 1.21069 1.02452 0.94173 0.97695 1.17227 1.02332 0.78589 0.96176 1.91450 1.91308 1.32476 1.96522 1.18684 0.98915 0.90016 0.89847 1.86075 1.68352 1.36343 1.32130 1.23060 0.94861 0.99685 0.89225 1.21103 1.03092 0.91028 1.00339 0.92115 0.88642 0.92317 0.87556 0.86591 0.90899 0.80338 0.83954 0.88370 0.92425 0.92520 0.84287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.55 101.05 1.07 1.57 16 2 O -0.37 -6.56 10.57 -39.24 -0.41 -6.98 16 3 C 0.45 9.49 8.02 36.00 0.29 9.78 16 4 O -0.49 -11.62 16.18 -18.75 -0.30 -11.93 16 5 C 0.11 2.24 4.79 -5.20 -0.02 2.22 16 6 N -0.44 -10.13 1.61 -117.25 -0.19 -10.32 16 7 C -0.35 -8.45 6.56 -15.00 -0.10 -8.55 16 8 H 0.12 3.00 6.43 -52.48 -0.34 2.66 16 9 C 0.07 1.59 5.31 -17.45 -0.09 1.50 16 10 N -0.84 -21.19 13.95 55.50 0.77 -20.41 16 11 Si 0.86 17.84 24.92 -169.99 -4.24 13.60 16 12 H -0.27 -5.31 6.74 56.52 0.38 -4.93 16 13 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 14 H -0.25 -5.20 7.11 56.52 0.40 -4.80 16 15 C 0.54 12.32 7.40 -12.43 -0.09 12.22 16 16 O -0.58 -14.11 16.31 5.27 0.09 -14.02 16 17 C -0.07 -1.51 5.52 -104.98 -0.58 -2.09 16 18 C -0.07 -1.33 7.75 -39.16 -0.30 -1.64 16 19 C -0.14 -2.32 10.00 -39.60 -0.40 -2.72 16 20 C 0.08 1.36 7.32 -39.15 -0.29 1.08 16 21 F -0.14 -2.43 17.10 2.25 0.04 -2.39 16 22 C 0.07 1.26 6.69 -39.24 -0.26 1.00 16 23 O -0.31 -5.10 10.36 -19.63 -0.20 -5.31 16 24 C 0.03 0.32 9.81 101.05 0.99 1.31 16 25 C -0.14 -2.54 8.59 -39.02 -0.34 -2.87 16 26 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 27 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 29 H 0.11 2.19 3.41 -51.93 -0.18 2.01 16 30 H 0.12 2.26 7.38 -51.93 -0.38 1.87 16 31 H 0.28 6.55 8.31 -40.82 -0.34 6.22 16 32 H 0.18 3.64 5.40 -52.49 -0.28 3.36 16 33 H 0.14 2.09 8.06 -52.49 -0.42 1.67 16 34 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.66 7.65 -51.93 -0.40 0.26 16 36 H 0.06 0.66 7.67 -51.93 -0.40 0.27 16 37 H 0.14 2.45 6.18 -52.49 -0.32 2.13 16 LS Contribution 323.29 15.07 4.87 4.87 Total: -1.00 -29.65 323.29 -3.27 -32.91 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -3.57 Total: 7.16 kcal Atomic # 6 Polarization: 12.94 SS G_CDS: -0.12 Total: 12.82 kcal Atomic # 7 Polarization: -31.32 SS G_CDS: 0.59 Total: -30.74 kcal Atomic # 8 Polarization: -37.40 SS G_CDS: -0.84 Total: -38.23 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.04 Total: -2.39 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -4.24 Total: 13.60 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.65 -3.27 -32.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155670982.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.150 kcal (2) G-P(sol) polarization free energy of solvation -29.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds