Wall clock time and date at job start Fri Apr 10 2020 14:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34225 * 116.99764 * 2 1 4 4 O 1.20829 * 120.00036 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99861 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.47191 * 179.97438 * 5 3 2 7 7 C 1.36885 * 120.00077 * 269.99562 * 6 5 3 8 8 H 1.08004 * 120.00430 * 138.95812 * 7 6 5 9 9 C 1.39039 * 120.00131 * 318.96546 * 7 6 5 10 10 N 1.31375 * 120.00115 * 161.85657 * 9 7 6 11 11 Si 1.86805 * 119.99783 * 341.85545 * 9 7 6 12 12 H 1.48501 * 109.46790 * 95.26127 * 11 9 7 13 13 H 1.48495 * 109.46796 * 215.26321 * 11 9 7 14 14 H 1.48495 * 109.46856 * 335.26247 * 11 9 7 15 15 C 1.34776 * 120.00290 * 89.99545 * 6 5 3 16 16 O 1.21607 * 120.00021 * 3.47772 * 15 6 5 17 17 C 1.47622 * 120.00408 * 183.46913 * 15 6 5 18 18 C 1.39721 * 120.10009 * 327.69402 * 17 15 6 19 19 C 1.37871 * 119.97459 * 180.02562 * 18 17 15 20 20 C 1.38549 * 120.18454 * 0.03258 * 19 18 17 21 21 F 1.35096 * 119.89708 * 179.97438 * 20 19 18 22 22 C 1.39100 * 120.20892 * 359.97438 * 20 19 18 23 23 O 1.35963 * 119.98848 * 179.97438 * 22 20 19 24 24 C 1.42903 * 116.99740 * 180.02562 * 23 22 20 25 25 C 1.38306 * 120.02246 * 0.24269 * 22 20 19 26 26 H 1.09005 * 109.47566 * 60.00502 * 1 2 3 27 27 H 1.09005 * 109.47645 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47561 * 300.00249 * 1 2 3 29 29 H 1.09000 * 109.47327 * 59.99694 * 5 3 2 30 30 H 1.09000 * 109.46870 * 299.99632 * 5 3 2 31 31 H 0.97001 * 119.99851 * 180.02562 * 10 9 7 32 32 H 1.07997 * 120.01490 * 0.02562 * 18 17 15 33 33 H 1.07998 * 119.90699 * 179.97438 * 19 18 17 34 34 H 1.09004 * 109.46847 * 180.02562 * 24 23 22 35 35 H 1.08996 * 109.47236 * 60.00120 * 24 23 22 36 36 H 1.08999 * 109.47294 * 299.99893 * 24 23 22 37 37 H 1.07993 * 120.09030 * 179.74503 * 25 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0006 6 7 3.9816 2.6797 -0.0011 7 6 4.1753 3.3358 -1.1868 8 1 3.8361 4.3547 -1.3019 9 6 4.8086 2.6904 -2.2430 10 7 4.6867 3.1562 -3.4654 11 14 5.8328 1.1611 -1.9239 12 1 5.0022 -0.0480 -2.1553 13 1 6.9980 1.1449 -2.8444 14 1 6.3122 1.1708 -0.5186 15 6 4.1730 3.3263 1.1659 16 8 4.0627 2.7271 2.2183 17 6 4.5168 4.7619 1.1666 18 6 5.2778 5.3008 0.1260 19 6 5.5978 6.6418 0.1295 20 6 5.1675 7.4580 1.1631 21 9 5.4848 8.7711 1.1610 22 6 4.4096 6.9296 2.2030 23 8 3.9900 7.7345 3.2152 24 6 3.2161 7.1249 4.2504 25 6 4.0874 5.5846 2.2104 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 3.9556 0.7809 -0.8908 30 1 3.9563 0.7806 0.8892 31 1 5.1282 2.7057 -4.2023 32 1 5.6152 4.6670 -0.6808 33 1 6.1865 7.0570 -0.6751 34 1 2.9466 7.8762 4.9928 35 1 3.8010 6.3375 4.7256 36 1 2.3099 6.6964 3.8222 37 1 3.5025 5.1724 3.0192 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155670982.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:33:27 Heat of formation + Delta-G solvation = -164.165102 kcal Electronic energy + Delta-G solvation = -26259.178512 eV Core-core repulsion = 22110.472175 eV Total energy + Delta-G solvation = -4148.706337 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.105 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.88246 -41.91578 -41.19064 -40.26280 -38.13147 -37.60474 -36.86844 -34.08861 -32.20566 -31.49312 -30.24658 -28.43884 -27.76369 -27.10547 -24.40458 -23.48381 -22.56633 -21.31666 -20.02669 -19.10252 -18.79219 -18.62025 -17.85423 -17.69039 -17.46845 -17.19217 -17.05700 -16.76450 -16.07619 -16.01224 -15.72023 -15.37905 -15.21437 -14.93621 -14.69267 -14.41460 -14.32891 -13.88136 -13.53691 -13.51319 -13.25619 -13.00000 -12.90510 -12.63541 -12.47362 -12.19584 -12.07508 -11.87602 -11.83727 -11.67552 -11.26261 -10.74617 -10.06023 -9.87918 -9.23534 -8.52667 -6.23169 -0.27637 0.26778 1.09399 1.21366 1.32386 1.41272 1.48068 1.88520 2.12286 2.14915 2.38845 2.61136 2.96327 3.13701 3.69582 3.75794 3.87916 3.91518 4.03641 4.18498 4.24649 4.29013 4.29834 4.32959 4.36766 4.49235 4.63773 4.67108 4.81794 4.89937 5.14454 5.25732 5.28050 5.43376 5.62512 5.96088 6.11680 6.20780 6.68325 6.80342 7.15217 7.49133 8.57620 Molecular weight = 311.10amu Principal moments of inertia in cm(-1) A = 0.013565 B = 0.005437 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.590779 B = 5148.267003 C = 6506.238168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.452 3.548 4 O -0.523 6.523 5 C 0.098 3.902 6 N -0.446 5.446 7 C -0.349 4.349 8 H 0.089 0.911 9 C 0.036 3.964 10 N -0.880 5.880 11 Si 0.907 3.093 12 H -0.249 1.249 13 H -0.273 1.273 14 H -0.251 1.251 15 C 0.530 3.470 16 O -0.603 6.603 17 C -0.097 4.097 18 C -0.075 4.075 19 C -0.124 4.124 20 C 0.075 3.925 21 F -0.135 7.135 22 C 0.077 3.923 23 O -0.323 6.323 24 C 0.017 3.983 25 C -0.137 4.137 26 H 0.056 0.944 27 H 0.141 0.859 28 H 0.059 0.941 29 H 0.114 0.886 30 H 0.132 0.868 31 H 0.285 0.715 32 H 0.166 0.834 33 H 0.168 0.832 34 H 0.132 0.868 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.402 -1.003 7.357 7.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C 0.293 3.707 4 O -0.411 6.411 5 C -0.026 4.026 6 N -0.166 5.166 7 C -0.476 4.476 8 H 0.107 0.893 9 C -0.171 4.171 10 N -0.515 5.515 11 Si 0.730 3.270 12 H -0.175 1.175 13 H -0.199 1.199 14 H -0.175 1.175 15 C 0.322 3.678 16 O -0.489 6.489 17 C -0.100 4.100 18 C -0.093 4.093 19 C -0.142 4.142 20 C 0.054 3.946 21 F -0.114 7.114 22 C 0.031 3.969 23 O -0.238 6.238 24 C -0.077 4.077 25 C -0.157 4.157 26 H 0.075 0.925 27 H 0.159 0.841 28 H 0.078 0.922 29 H 0.131 0.869 30 H 0.150 0.850 31 H 0.096 0.904 32 H 0.183 0.817 33 H 0.186 0.814 34 H 0.150 0.850 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.629 -0.782 7.669 7.879 hybrid contribution -0.143 -0.454 -0.312 0.569 sum -1.772 -1.236 7.357 7.668 Atomic orbital electron populations 1.23571 0.74786 1.05927 1.02240 1.86487 1.25192 1.32254 1.84045 1.24564 0.92801 0.81680 0.71608 1.90615 1.67276 1.37546 1.45685 1.21535 0.87571 0.87258 1.06270 1.43233 1.58028 1.09199 1.06127 1.19016 1.39362 1.00630 0.88584 0.89313 1.25881 0.96546 1.00582 0.94043 1.69772 1.39997 1.42195 0.99524 0.86379 0.80032 0.80295 0.80247 1.17452 1.19881 1.17452 1.18479 0.78548 0.87740 0.83018 1.90619 1.57269 1.69046 1.31941 1.19645 1.01035 0.92994 0.96362 1.22095 0.94991 0.94986 0.97250 1.21229 1.01801 0.93128 0.98069 1.17325 1.02203 0.78746 0.96291 1.91459 1.91240 1.32182 1.96503 1.18718 0.98240 0.89691 0.90248 1.86081 1.68641 1.36663 1.32374 1.23406 0.94410 1.01131 0.88738 1.21126 1.03218 0.91322 1.00013 0.92473 0.84078 0.92214 0.86908 0.85004 0.90446 0.81729 0.81430 0.84962 0.91827 0.92419 0.83615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 10.55 113.37 1.20 1.90 16 2 O -0.36 -12.35 10.57 -51.37 -0.54 -12.89 16 3 C 0.45 18.88 8.02 71.24 0.57 19.45 16 4 O -0.52 -25.18 16.18 21.96 0.36 -24.83 16 5 C 0.10 4.08 4.79 85.63 0.41 4.49 16 6 N -0.45 -20.78 1.61 -643.12 -1.04 -21.82 16 7 C -0.35 -17.15 6.56 84.10 0.55 -16.60 16 8 H 0.09 4.78 6.43 -2.91 -0.02 4.77 16 9 C 0.04 1.73 5.31 84.95 0.45 2.18 16 10 N -0.88 -44.79 13.95 21.68 0.30 -44.49 16 11 Si 0.91 35.99 24.92 68.60 1.71 37.69 16 12 H -0.25 -9.12 6.74 99.48 0.67 -8.45 16 13 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 14 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 15 C 0.53 24.66 7.40 86.72 0.64 25.30 16 16 O -0.60 -29.20 16.31 -4.05 -0.07 -29.26 16 17 C -0.10 -4.08 5.52 -20.10 -0.11 -4.19 16 18 C -0.07 -2.93 7.75 22.54 0.17 -2.75 16 19 C -0.12 -4.17 10.00 22.26 0.22 -3.95 16 20 C 0.07 2.56 7.32 22.55 0.16 2.73 16 21 F -0.14 -4.52 17.10 44.97 0.77 -3.75 16 22 C 0.08 2.67 6.69 22.49 0.15 2.82 16 23 O -0.32 -9.95 10.36 -93.14 -0.96 -10.92 16 24 C 0.02 0.38 9.81 113.37 1.11 1.49 16 25 C -0.14 -5.09 8.59 22.63 0.19 -4.90 16 26 H 0.06 1.50 8.13 -2.38 -0.02 1.48 16 27 H 0.14 2.27 8.14 -2.38 -0.02 2.25 16 28 H 0.06 1.51 8.13 -2.38 -0.02 1.50 16 29 H 0.11 4.49 3.41 -2.39 -0.01 4.48 16 30 H 0.13 5.00 7.38 -2.39 -0.02 4.98 16 31 H 0.29 13.41 8.31 -92.71 -0.77 12.64 16 32 H 0.17 6.93 5.40 -2.91 -0.02 6.91 16 33 H 0.17 4.69 8.06 -2.91 -0.02 4.67 16 34 H 0.13 1.99 8.14 -2.38 -0.02 1.97 16 35 H 0.06 1.34 7.65 -2.39 -0.02 1.32 16 36 H 0.06 1.27 7.67 -2.39 -0.02 1.25 16 37 H 0.15 5.11 6.18 -2.91 -0.02 5.09 16 Total: -1.00 -63.85 323.29 7.36 -56.49 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 1.10 Total: 25.81 kcal Atomic # 6 Polarization: 22.23 SS G_CDS: 5.73 Total: 27.96 kcal Atomic # 7 Polarization: -65.57 SS G_CDS: -0.73 Total: -66.31 kcal Atomic # 8 Polarization: -76.68 SS G_CDS: -1.22 Total: -77.90 kcal Atomic # 9 Polarization: -4.52 SS G_CDS: 0.77 Total: -3.75 kcal Atomic # 14 Polarization: 35.99 SS G_CDS: 1.71 Total: 37.69 kcal Total: -63.85 7.36 -56.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155670982.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.675 kcal (2) G-P(sol) polarization free energy of solvation -63.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds