Wall clock time and date at job start Fri Apr 10 2020 14:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34225 * 117.00174 * 2 1 4 4 O 1.20825 * 120.00043 * 0.02562 * 3 2 1 5 5 C 1.50706 * 120.00020 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.46746 * 305.00321 * 5 3 2 7 7 C 1.53002 * 109.46568 * 65.00229 * 5 3 2 8 8 N 1.46511 * 109.46554 * 184.99909 * 7 5 3 9 9 C 1.34780 * 119.99424 * 179.72194 * 8 7 5 10 10 O 1.21679 * 120.00315 * 0.28271 * 9 8 7 11 11 C 1.46376 * 119.99379 * 180.27363 * 9 8 7 12 12 H 1.08002 * 120.00242 * 0.02562 * 11 9 8 13 13 C 1.40048 * 119.99496 * 180.02562 * 11 9 8 14 14 N 1.30674 * 120.00385 * 0.02562 * 13 11 9 15 15 Si 1.86802 * 119.99825 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.46922 * 60.00243 * 15 13 11 17 17 H 1.48500 * 109.47345 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47160 * 300.00502 * 15 13 11 19 19 O 1.42899 * 109.47125 * 185.00085 * 5 3 2 20 20 C 1.35944 * 116.99689 * 84.67641 * 19 5 3 21 21 C 1.38714 * 120.02990 * 174.24586 * 20 19 5 22 22 C 1.38147 * 119.96924 * 179.75380 * 21 20 19 23 23 C 1.38451 * 120.02897 * 0.52548 * 22 21 20 24 24 F 1.35105 * 119.96782 * 179.72601 * 23 22 21 25 25 C 1.38451 * 120.06433 * 359.74986 * 23 22 21 26 26 C 1.38150 * 120.02864 * 359.97438 * 25 23 22 27 27 H 1.08994 * 109.46652 * 300.00033 * 1 2 3 28 28 H 1.08999 * 109.46674 * 59.99563 * 1 2 3 29 29 H 1.08999 * 109.47389 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47294 * 65.00263 * 7 5 3 31 31 H 1.09001 * 109.47286 * 304.99485 * 7 5 3 32 32 H 0.96992 * 119.99807 * 0.02562 * 8 7 5 33 33 H 0.97000 * 120.00026 * 179.97438 * 14 13 11 34 34 H 1.07996 * 120.01111 * 0.02562 * 21 20 19 35 35 H 1.08001 * 119.98098 * 180.25873 * 22 21 20 36 36 H 1.07996 * 119.98629 * 179.97438 * 25 23 22 37 37 H 1.08004 * 120.01642 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5665 1.2748 0.0006 6 1 3.9597 0.7052 0.8427 7 6 4.1080 0.6924 -1.3065 8 7 5.5719 0.6591 -1.2566 9 6 6.2710 0.1767 -2.3032 10 8 5.6865 -0.2263 -3.2914 11 6 7.7333 0.1379 -2.2509 12 1 8.2520 0.4954 -1.3737 13 6 8.4597 -0.3628 -3.3386 14 7 7.8321 -0.7949 -4.4002 15 14 10.3258 -0.4130 -3.2717 16 1 10.7576 -1.2605 -2.1313 17 1 10.8514 -0.9832 -4.5382 18 1 10.8519 0.9640 -3.0922 19 8 3.9719 2.6400 0.1179 20 6 4.0442 3.1566 1.3733 21 6 4.5442 4.4354 1.5700 22 6 4.6125 4.9610 2.8458 23 6 4.1922 4.2079 3.9288 24 9 4.2646 4.7211 5.1765 25 6 3.6982 2.9292 3.7346 26 6 3.6235 2.4032 2.4593 27 1 -0.3632 0.5138 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.7870 1.3145 -2.1420 31 1 3.7259 -0.3198 -1.4392 32 1 6.0377 0.9801 -0.4688 33 1 8.3353 -1.1413 -5.1536 34 1 4.8760 5.0215 0.7257 35 1 4.9978 5.9583 2.9987 36 1 3.3711 2.3427 4.5803 37 1 3.2378 1.4058 2.3080 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357665729.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:34:30 Heat of formation + Delta-G solvation = -196.082220 kcal Electronic energy + Delta-G solvation = -25258.169010 eV Core-core repulsion = 21108.078643 eV Total energy + Delta-G solvation = -4150.090367 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.105 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.85432 -42.31054 -40.83904 -39.45579 -38.49057 -37.52936 -35.50678 -34.47965 -32.49401 -31.81013 -30.21248 -28.91904 -27.97665 -25.45215 -24.07676 -23.65049 -21.99946 -21.79194 -19.77379 -19.61816 -18.90781 -18.56782 -18.11948 -17.61077 -17.46389 -17.18711 -16.58458 -16.24066 -15.99892 -15.86812 -15.55444 -15.41697 -15.09342 -14.70745 -14.41097 -14.22865 -14.20560 -14.11734 -13.68547 -13.45318 -13.16700 -13.01972 -12.78820 -12.66654 -12.61773 -12.58336 -12.04252 -11.92940 -11.87900 -11.62627 -10.89444 -10.25484 -9.90209 -9.58464 -9.24603 -8.27761 -6.83840 0.07345 0.11861 0.75636 1.23093 1.44026 1.46750 1.58518 1.89132 2.27334 2.48544 2.50433 2.94551 3.23531 3.38265 3.46304 3.60347 3.63927 3.66128 3.74743 4.06438 4.21789 4.23414 4.28685 4.37063 4.58798 4.61445 4.66618 4.82800 5.02059 5.07922 5.09415 5.11798 5.34694 5.58204 5.86356 6.05602 6.09439 6.24512 6.44206 6.88868 7.48525 8.47476 8.67685 Molecular weight = 311.10amu Principal moments of inertia in cm(-1) A = 0.011624 B = 0.003894 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.264418 B = 7189.589216 C = 9152.644776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.353 6.353 3 C 0.450 3.550 4 O -0.510 6.510 5 C 0.098 3.902 6 H 0.145 0.855 7 C 0.151 3.849 8 N -0.748 5.748 9 C 0.541 3.459 10 O -0.629 6.629 11 C -0.570 4.570 12 H 0.090 0.910 13 C 0.031 3.969 14 N -0.820 5.820 15 Si 0.997 3.003 16 H -0.253 1.253 17 H -0.276 1.276 18 H -0.256 1.256 19 O -0.289 6.289 20 C 0.102 3.898 21 C -0.125 4.125 22 C -0.106 4.106 23 C 0.048 3.952 24 F -0.145 7.145 25 C -0.107 4.107 26 C -0.186 4.186 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.137 0.863 30 H 0.044 0.956 31 H 0.086 0.914 32 H 0.398 0.602 33 H 0.275 0.725 34 H 0.151 0.849 35 H 0.167 0.833 36 H 0.161 0.839 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.918 5.456 17.140 20.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.269 6.269 3 C 0.291 3.709 4 O -0.397 6.397 5 C 0.040 3.960 6 H 0.162 0.838 7 C 0.026 3.974 8 N -0.404 5.404 9 C 0.346 3.654 10 O -0.516 6.516 11 C -0.606 4.606 12 H 0.108 0.892 13 C -0.185 4.185 14 N -0.450 5.450 15 Si 0.816 3.184 16 H -0.177 1.177 17 H -0.201 1.201 18 H -0.180 1.180 19 O -0.202 6.202 20 C 0.057 3.943 21 C -0.143 4.143 22 C -0.124 4.124 23 C 0.029 3.971 24 F -0.123 7.123 25 C -0.126 4.126 26 C -0.204 4.204 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.155 0.845 30 H 0.063 0.937 31 H 0.104 0.896 32 H 0.232 0.768 33 H 0.085 0.915 34 H 0.168 0.832 35 H 0.184 0.816 36 H 0.179 0.821 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -9.577 5.497 16.117 19.536 hybrid contribution 0.314 0.142 0.222 0.410 sum -9.262 5.639 16.338 19.610 Atomic orbital electron populations 1.23683 0.73861 1.06238 1.02913 1.86531 1.25728 1.31498 1.83187 1.24042 0.92027 0.82234 0.72608 1.90691 1.66940 1.37074 1.45027 1.22156 0.87492 0.83489 1.02892 0.83752 1.20820 0.83752 0.99987 0.92870 1.45658 1.03976 1.69967 1.20778 1.18571 0.88932 0.76880 0.81042 1.90569 1.72359 1.54054 1.34600 1.21369 0.89946 1.45037 1.04246 0.89234 1.26939 1.06267 0.91719 0.93561 1.70172 1.39484 1.30387 1.04929 0.85086 0.74831 0.79881 0.78608 1.17679 1.20069 1.18000 1.86336 1.81364 1.26235 1.26234 1.19405 0.96939 0.94525 0.83402 1.20503 1.02165 0.93341 0.98301 1.21193 0.99642 1.01505 0.90095 1.17744 1.05497 0.94104 0.79791 1.91484 1.94673 1.87147 1.39040 1.21119 0.99122 0.94232 0.98085 1.21198 1.05647 1.01523 0.92051 0.90964 0.92066 0.84541 0.93720 0.89617 0.76774 0.91526 0.83176 0.81597 0.82124 0.83933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.63 16 2 O -0.35 -8.51 10.53 -51.37 -0.54 -9.05 16 3 C 0.45 12.64 6.34 71.24 0.45 13.09 16 4 O -0.51 -16.63 16.13 28.39 0.46 -16.18 16 5 C 0.10 2.78 2.18 29.85 0.07 2.84 16 6 H 0.15 3.20 6.33 -2.38 -0.02 3.19 16 7 C 0.15 5.60 5.32 86.38 0.46 6.05 16 8 N -0.75 -32.08 5.50 -467.38 -2.57 -34.65 16 9 C 0.54 30.47 7.75 86.36 0.67 31.14 16 10 O -0.63 -41.15 15.02 -4.28 -0.06 -41.21 16 11 C -0.57 -31.35 9.54 24.83 0.24 -31.12 16 12 H 0.09 4.38 7.85 -2.91 -0.02 4.35 16 13 C 0.03 1.67 5.50 85.30 0.47 2.14 16 14 N -0.82 -49.35 11.83 21.84 0.26 -49.09 16 15 Si 1.00 39.94 29.56 68.60 2.03 41.97 16 16 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 17 H -0.28 -10.73 7.11 99.48 0.71 -10.03 16 18 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 19 O -0.29 -8.78 9.33 -73.89 -0.69 -9.47 16 20 C 0.10 2.64 6.46 22.50 0.15 2.78 16 21 C -0.12 -2.84 9.99 22.36 0.22 -2.61 16 22 C -0.11 -2.05 10.02 22.30 0.22 -1.82 16 23 C 0.05 0.98 7.30 22.37 0.16 1.14 16 24 F -0.14 -3.04 17.27 44.97 0.78 -2.27 16 25 C -0.11 -2.05 10.02 22.30 0.22 -1.83 16 26 C -0.19 -4.02 8.70 22.36 0.19 -3.83 16 27 H 0.07 1.10 8.13 -2.39 -0.02 1.08 16 28 H 0.06 1.10 8.13 -2.39 -0.02 1.09 16 29 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.09 3.20 8.12 -2.39 -0.02 3.18 16 32 H 0.40 14.68 8.45 -92.71 -0.78 13.89 16 33 H 0.27 15.01 8.29 -92.71 -0.77 14.25 16 34 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 35 H 0.17 2.32 8.06 -2.91 -0.02 2.29 16 36 H 0.16 2.24 8.06 -2.91 -0.02 2.21 16 37 H 0.14 2.66 5.68 -2.91 -0.02 2.65 16 Total: -1.00 -78.28 337.59 4.72 -73.56 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: 0.35 Total: 26.76 kcal Atomic # 6 Polarization: 14.89 SS G_CDS: 4.72 Total: 19.62 kcal Atomic # 7 Polarization: -81.43 SS G_CDS: -2.31 Total: -83.74 kcal Atomic # 8 Polarization: -75.07 SS G_CDS: -0.84 Total: -75.91 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.78 Total: -2.27 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.97 kcal Total: -78.28 4.72 -73.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357665729.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.525 kcal (2) G-P(sol) polarization free energy of solvation -78.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds