Wall clock time and date at job start Fri Apr 10 2020 14:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34228 * 116.99665 * 2 1 4 4 O 1.20825 * 119.99929 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99796 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.47354 * 60.00391 * 5 3 2 7 7 C 1.53003 * 109.47199 * 300.00267 * 5 3 2 8 8 N 1.46495 * 109.47137 * 179.97438 * 7 5 3 9 9 C 1.34781 * 119.99854 * 179.97438 * 8 7 5 10 10 O 1.21685 * 119.99967 * 0.02562 * 9 8 7 11 11 C 1.46373 * 119.99552 * 180.02562 * 9 8 7 12 12 H 1.07998 * 120.00424 * 359.97438 * 11 9 8 13 13 C 1.40052 * 119.99553 * 180.02562 * 11 9 8 14 14 N 1.30668 * 120.00302 * 359.97438 * 13 11 9 15 15 Si 1.86802 * 119.99692 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47210 * 60.00241 * 15 13 11 17 17 H 1.48504 * 109.46916 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47373 * 299.99949 * 15 13 11 19 19 O 1.42900 * 109.46852 * 180.02562 * 5 3 2 20 20 C 1.35942 * 117.00056 * 275.19124 * 19 5 3 21 21 C 1.38706 * 120.02897 * 5.50207 * 20 19 5 22 22 C 1.38151 * 119.96999 * 179.97438 * 21 20 19 23 23 C 1.38452 * 120.03284 * 0.25785 * 22 21 20 24 24 F 1.35099 * 119.97530 * 179.72124 * 23 22 21 25 25 C 1.38461 * 120.05657 * 359.49118 * 23 22 21 26 26 C 1.38152 * 120.03131 * 0.50799 * 25 23 22 27 27 H 1.09001 * 109.47305 * 59.99815 * 1 2 3 28 28 H 1.08998 * 109.46795 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46971 * 299.99458 * 1 2 3 30 30 H 1.08996 * 109.47069 * 300.00299 * 7 5 3 31 31 H 1.08999 * 109.46930 * 59.99699 * 7 5 3 32 32 H 0.97006 * 120.00094 * 0.02562 * 8 7 5 33 33 H 0.96996 * 120.00343 * 179.97438 * 14 13 11 34 34 H 1.08000 * 120.01892 * 359.95948 * 21 20 19 35 35 H 1.08004 * 119.98561 * 179.97438 * 22 21 20 36 36 H 1.08001 * 119.98557 * 180.25290 * 25 23 22 37 37 H 1.07991 * 120.01870 * 179.72654 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9557 0.7811 -0.8908 7 6 4.1139 0.5810 1.2483 8 7 5.5769 0.6572 1.2474 9 6 6.2808 0.1098 2.2580 10 8 5.7011 -0.4481 3.1710 11 6 7.7425 0.1864 2.2574 12 1 8.2570 0.6812 1.4469 13 6 8.4740 -0.3829 3.3073 14 7 7.8516 -0.9820 4.2876 15 14 10.3394 -0.2857 3.3061 16 1 10.7610 1.1382 3.3060 17 1 10.8709 -0.9587 4.5186 18 1 10.8695 -0.9589 2.0933 19 8 3.9714 2.6453 0.0001 20 6 4.0407 3.2690 -1.2058 21 6 3.6169 2.6129 -2.3520 22 6 3.6875 3.2481 -3.5768 23 6 4.1858 4.5370 -3.6612 24 9 4.2595 5.1550 -4.8604 25 6 4.6043 5.1951 -2.5172 26 6 4.5349 4.5623 -1.2910 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 3.7245 1.0749 2.1385 31 1 3.8048 -0.4642 1.2481 32 1 6.0389 1.1023 0.5198 33 1 8.3582 -1.3766 5.0146 34 1 3.2322 1.6058 -2.2871 35 1 3.3579 2.7373 -4.4695 36 1 4.9891 6.2020 -2.5838 37 1 4.8656 5.0741 -0.3995 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357665731.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:34:36 Heat of formation + Delta-G solvation = -171.900598 kcal Electronic energy + Delta-G solvation = -25274.296667 eV Core-core repulsion = 21125.254894 eV Total energy + Delta-G solvation = -4149.041773 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.105 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -48.96465 -41.21064 -39.82638 -37.84479 -37.10430 -36.40634 -33.76277 -32.40841 -31.50801 -30.47265 -29.24414 -27.66234 -26.32515 -24.07056 -23.03963 -22.69955 -20.91142 -19.83154 -18.76833 -18.19593 -17.64447 -17.32635 -17.04420 -16.49654 -16.26762 -15.69530 -15.31829 -15.04129 -14.77959 -14.57152 -14.12064 -13.97196 -13.82430 -13.70358 -13.35649 -13.21490 -12.94651 -12.75472 -12.32037 -12.24180 -11.76690 -11.63740 -11.45929 -11.21885 -11.01620 -10.97907 -10.83764 -10.55721 -10.44518 -10.26257 -9.39419 -8.87781 -8.28827 -7.70808 -7.66446 -6.22722 -4.68336 0.94914 1.02958 1.90475 2.26760 2.96844 3.14947 3.20055 3.21802 3.40495 4.06154 4.11729 4.34629 4.44206 4.47463 4.54274 4.60734 4.76100 4.91342 4.93089 5.00862 5.01929 5.10301 5.31093 5.34881 5.64225 5.70092 5.88759 5.96291 5.99918 6.09693 6.11301 6.17174 6.47999 7.05582 7.40274 7.51795 7.80297 7.94089 8.26087 8.98660 9.41953 10.54061 10.71961 Molecular weight = 311.10amu Principal moments of inertia in cm(-1) A = 0.011531 B = 0.003936 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.684054 B = 7111.362330 C = 9140.203069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.350 6.350 3 C 0.443 3.557 4 O -0.487 6.487 5 C 0.087 3.913 6 H 0.117 0.883 7 C 0.147 3.853 8 N -0.762 5.762 9 C 0.556 3.444 10 O -0.579 6.579 11 C -0.543 4.543 12 H 0.068 0.932 13 C 0.088 3.912 14 N -0.767 5.767 15 Si 0.909 3.091 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.268 1.268 19 O -0.267 6.267 20 C 0.128 3.872 21 C -0.181 4.181 22 C -0.110 4.110 23 C 0.056 3.944 24 F -0.143 7.143 25 C -0.111 4.111 26 C -0.115 4.115 27 H 0.062 0.938 28 H 0.104 0.896 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.384 0.616 33 H 0.270 0.730 34 H 0.131 0.869 35 H 0.137 0.863 36 H 0.143 0.857 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.844 6.270 -14.406 18.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.266 6.266 3 C 0.283 3.717 4 O -0.373 6.373 5 C 0.029 3.971 6 H 0.135 0.865 7 C 0.022 3.978 8 N -0.420 5.420 9 C 0.361 3.639 10 O -0.461 6.461 11 C -0.580 4.580 12 H 0.087 0.913 13 C -0.132 4.132 14 N -0.396 5.396 15 Si 0.733 3.267 16 H -0.192 1.192 17 H -0.206 1.206 18 H -0.193 1.193 19 O -0.180 6.180 20 C 0.082 3.918 21 C -0.200 4.200 22 C -0.129 4.129 23 C 0.036 3.964 24 F -0.122 7.122 25 C -0.130 4.130 26 C -0.133 4.133 27 H 0.081 0.919 28 H 0.123 0.877 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.216 0.784 33 H 0.080 0.920 34 H 0.149 0.851 35 H 0.155 0.845 36 H 0.161 0.839 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.474 6.140 -13.373 18.062 hybrid contribution 0.692 0.315 -0.763 1.077 sum -9.783 6.455 -14.136 18.363 Atomic orbital electron populations 1.23325 0.75928 1.03999 1.02625 1.86546 1.23716 1.32590 1.83769 1.24189 0.92233 0.82091 0.73159 1.90706 1.66489 1.36203 1.43866 1.22410 0.87233 0.82723 1.04753 0.86518 1.20908 0.85638 0.98856 0.92419 1.46087 1.02632 1.64700 1.28563 1.18226 0.88047 0.77824 0.79829 1.90614 1.71590 1.47396 1.36536 1.20809 0.89475 1.39045 1.08622 0.91332 1.25701 1.00005 0.93111 0.94391 1.69999 1.36636 1.25725 1.07193 0.86415 0.82902 0.79136 0.78198 1.19242 1.20553 1.19252 1.86388 1.80772 1.23995 1.26797 1.19106 0.95351 0.92916 0.84414 1.21040 1.05721 1.01209 0.92016 1.20858 1.00001 0.93527 0.98482 1.17548 1.05371 0.92492 0.80960 1.91481 1.94649 1.82669 1.43400 1.20960 1.00559 1.00836 0.90643 1.20318 1.02061 0.92551 0.98416 0.91917 0.87719 0.91599 0.91504 0.89461 0.78426 0.91967 0.85127 0.84500 0.83943 0.83652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 101.05 1.07 1.39 16 2 O -0.35 -4.42 10.47 -39.25 -0.41 -4.83 16 3 C 0.44 6.33 6.41 36.01 0.23 6.56 16 4 O -0.49 -7.96 16.04 -25.48 -0.41 -8.37 16 5 C 0.09 1.25 2.24 -27.88 -0.06 1.19 16 6 H 0.12 1.38 6.32 -51.93 -0.33 1.05 16 7 C 0.15 2.67 5.30 -4.04 -0.02 2.65 16 8 N -0.76 -16.22 5.44 -61.72 -0.34 -16.56 16 9 C 0.56 15.32 7.75 -12.99 -0.10 15.22 16 10 O -0.58 -18.22 15.02 5.20 0.08 -18.14 16 11 C -0.54 -14.92 9.54 -35.63 -0.34 -15.26 16 12 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 13 C 0.09 2.40 5.50 -17.37 -0.10 2.31 16 14 N -0.77 -22.57 11.83 55.55 0.66 -21.91 16 15 Si 0.91 19.74 29.56 -169.99 -5.02 14.71 16 16 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 17 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 18 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 19 O -0.27 -4.09 9.14 -39.51 -0.36 -4.45 16 20 C 0.13 1.71 6.37 -39.23 -0.25 1.46 16 21 C -0.18 -2.13 8.70 -39.44 -0.34 -2.47 16 22 C -0.11 -1.18 10.02 -39.53 -0.40 -1.58 16 23 C 0.06 0.63 7.30 -39.42 -0.29 0.34 16 24 F -0.14 -1.67 17.27 2.25 0.04 -1.63 16 25 C -0.11 -1.18 10.02 -39.53 -0.40 -1.58 16 26 C -0.11 -1.37 9.99 -39.44 -0.39 -1.76 16 27 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 28 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.09 1.58 8.11 -51.93 -0.42 1.16 16 32 H 0.38 7.22 8.33 -40.82 -0.34 6.88 16 33 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 34 H 0.13 1.36 5.68 -52.49 -0.30 1.06 16 35 H 0.14 1.17 8.06 -52.48 -0.42 0.74 16 36 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 337.09 15.07 5.08 5.08 Total: -1.00 -35.31 337.09 -5.97 -41.28 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -3.89 Total: 6.36 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: -1.39 Total: 8.46 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.32 Total: -38.47 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -1.10 Total: -35.79 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.31 -5.97 -41.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357665731.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.624 kcal (2) G-P(sol) polarization free energy of solvation -35.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds