Wall clock time and date at job start Fri Apr 10 2020 14:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34228 * 116.99665 * 2 1 4 4 O 1.20825 * 119.99929 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99796 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.47354 * 60.00391 * 5 3 2 7 7 C 1.53003 * 109.47199 * 300.00267 * 5 3 2 8 8 N 1.46495 * 109.47137 * 179.97438 * 7 5 3 9 9 C 1.34781 * 119.99854 * 179.97438 * 8 7 5 10 10 O 1.21685 * 119.99967 * 0.02562 * 9 8 7 11 11 C 1.46373 * 119.99552 * 180.02562 * 9 8 7 12 12 H 1.07998 * 120.00424 * 359.97438 * 11 9 8 13 13 C 1.40052 * 119.99553 * 180.02562 * 11 9 8 14 14 N 1.30668 * 120.00302 * 359.97438 * 13 11 9 15 15 Si 1.86802 * 119.99692 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47210 * 60.00241 * 15 13 11 17 17 H 1.48504 * 109.46916 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47373 * 299.99949 * 15 13 11 19 19 O 1.42900 * 109.46852 * 180.02562 * 5 3 2 20 20 C 1.35942 * 117.00056 * 275.19124 * 19 5 3 21 21 C 1.38706 * 120.02897 * 5.50207 * 20 19 5 22 22 C 1.38151 * 119.96999 * 179.97438 * 21 20 19 23 23 C 1.38452 * 120.03284 * 0.25785 * 22 21 20 24 24 F 1.35099 * 119.97530 * 179.72124 * 23 22 21 25 25 C 1.38461 * 120.05657 * 359.49118 * 23 22 21 26 26 C 1.38152 * 120.03131 * 0.50799 * 25 23 22 27 27 H 1.09001 * 109.47305 * 59.99815 * 1 2 3 28 28 H 1.08998 * 109.46795 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46971 * 299.99458 * 1 2 3 30 30 H 1.08996 * 109.47069 * 300.00299 * 7 5 3 31 31 H 1.08999 * 109.46930 * 59.99699 * 7 5 3 32 32 H 0.97006 * 120.00094 * 0.02562 * 8 7 5 33 33 H 0.96996 * 120.00343 * 179.97438 * 14 13 11 34 34 H 1.08000 * 120.01892 * 359.95948 * 21 20 19 35 35 H 1.08004 * 119.98561 * 179.97438 * 22 21 20 36 36 H 1.08001 * 119.98557 * 180.25290 * 25 23 22 37 37 H 1.07991 * 120.01870 * 179.72654 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9557 0.7811 -0.8908 7 6 4.1139 0.5810 1.2483 8 7 5.5769 0.6572 1.2474 9 6 6.2808 0.1098 2.2580 10 8 5.7011 -0.4481 3.1710 11 6 7.7425 0.1864 2.2574 12 1 8.2570 0.6812 1.4469 13 6 8.4740 -0.3829 3.3073 14 7 7.8516 -0.9820 4.2876 15 14 10.3394 -0.2857 3.3061 16 1 10.7610 1.1382 3.3060 17 1 10.8709 -0.9587 4.5186 18 1 10.8695 -0.9589 2.0933 19 8 3.9714 2.6453 0.0001 20 6 4.0407 3.2690 -1.2058 21 6 3.6169 2.6129 -2.3520 22 6 3.6875 3.2481 -3.5768 23 6 4.1858 4.5370 -3.6612 24 9 4.2595 5.1550 -4.8604 25 6 4.6043 5.1951 -2.5172 26 6 4.5349 4.5623 -1.2910 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 3.7245 1.0749 2.1385 31 1 3.8048 -0.4642 1.2481 32 1 6.0389 1.1023 0.5198 33 1 8.3582 -1.3766 5.0146 34 1 3.2322 1.6058 -2.2871 35 1 3.3579 2.7373 -4.4695 36 1 4.9891 6.2020 -2.5838 37 1 4.8656 5.0741 -0.3995 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357665731.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:34:35 Heat of formation + Delta-G solvation = -195.825750 kcal Electronic energy + Delta-G solvation = -25275.334140 eV Core-core repulsion = 21125.254894 eV Total energy + Delta-G solvation = -4150.079246 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.105 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.85268 -42.30831 -40.83344 -39.44864 -38.48232 -37.52445 -35.49143 -34.47539 -32.49131 -31.81159 -30.20904 -28.90621 -27.97327 -25.43934 -24.07510 -23.64614 -21.99303 -21.77249 -19.77361 -19.62665 -18.88130 -18.56296 -18.13428 -17.59906 -17.46386 -17.18348 -16.58217 -16.23533 -15.99349 -15.86519 -15.54050 -15.41608 -15.09069 -14.70470 -14.40547 -14.22842 -14.19742 -14.10756 -13.68136 -13.44967 -13.16289 -13.01394 -12.78373 -12.66074 -12.61892 -12.57536 -12.04176 -11.92563 -11.87262 -11.61954 -10.89332 -10.24821 -9.89775 -9.57314 -9.23837 -8.27567 -6.83558 0.08102 0.12463 0.75900 1.25219 1.43965 1.46736 1.58429 1.89116 2.27494 2.48782 2.51047 2.94431 3.23921 3.39304 3.46959 3.59925 3.64964 3.66697 3.75079 4.07014 4.22403 4.23552 4.28969 4.38340 4.59009 4.62911 4.66933 4.83203 5.02545 5.08459 5.10027 5.12337 5.34852 5.58632 5.86870 6.05898 6.11057 6.24863 6.44336 6.89087 7.49112 8.47887 8.67947 Molecular weight = 311.10amu Principal moments of inertia in cm(-1) A = 0.011531 B = 0.003936 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.684054 B = 7111.362330 C = 9140.203069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.353 6.353 3 C 0.450 3.550 4 O -0.509 6.509 5 C 0.098 3.902 6 H 0.146 0.854 7 C 0.151 3.849 8 N -0.748 5.748 9 C 0.541 3.459 10 O -0.629 6.629 11 C -0.570 4.570 12 H 0.089 0.911 13 C 0.031 3.969 14 N -0.820 5.820 15 Si 0.996 3.004 16 H -0.256 1.256 17 H -0.276 1.276 18 H -0.253 1.253 19 O -0.288 6.288 20 C 0.103 3.897 21 C -0.184 4.184 22 C -0.108 4.108 23 C 0.048 3.952 24 F -0.145 7.145 25 C -0.106 4.106 26 C -0.125 4.125 27 H 0.072 0.928 28 H 0.136 0.864 29 H 0.060 0.940 30 H 0.043 0.957 31 H 0.087 0.913 32 H 0.398 0.602 33 H 0.275 0.725 34 H 0.142 0.858 35 H 0.161 0.839 36 H 0.166 0.834 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.990 6.686 -16.445 19.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.270 6.270 3 C 0.291 3.709 4 O -0.397 6.397 5 C 0.039 3.961 6 H 0.163 0.837 7 C 0.026 3.974 8 N -0.404 5.404 9 C 0.346 3.654 10 O -0.516 6.516 11 C -0.606 4.606 12 H 0.107 0.893 13 C -0.185 4.185 14 N -0.450 5.450 15 Si 0.816 3.184 16 H -0.180 1.180 17 H -0.201 1.201 18 H -0.177 1.177 19 O -0.202 6.202 20 C 0.059 3.941 21 C -0.203 4.203 22 C -0.126 4.126 23 C 0.028 3.972 24 F -0.124 7.124 25 C -0.125 4.125 26 C -0.143 4.143 27 H 0.091 0.909 28 H 0.154 0.846 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.105 0.895 32 H 0.232 0.768 33 H 0.085 0.915 34 H 0.160 0.840 35 H 0.178 0.822 36 H 0.184 0.816 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -9.644 6.579 -15.478 19.387 hybrid contribution 0.306 0.219 -0.198 0.425 sum -9.338 6.798 -15.675 19.471 Atomic orbital electron populations 1.23678 0.73887 1.06208 1.02906 1.86536 1.25712 1.31526 1.83177 1.24045 0.92026 0.82232 0.72591 1.90693 1.66904 1.37037 1.45091 1.22171 0.87482 0.82805 1.03606 0.83670 1.20836 0.83584 0.99290 0.93685 1.45646 1.04041 1.63280 1.27401 1.18567 0.88885 0.77710 0.80269 1.90570 1.72611 1.49657 1.38739 1.21368 0.90010 1.39549 1.09696 0.89285 1.26933 1.06254 0.91881 0.93395 1.70167 1.39458 1.27013 1.08325 0.85091 0.74862 0.79728 0.78754 1.18022 1.20053 1.17683 1.86330 1.81348 1.24156 1.28323 1.19387 0.96891 0.93652 0.84202 1.21182 1.05535 1.01765 0.91807 1.21117 0.99144 0.93390 0.98969 1.17742 1.05495 0.92868 0.81055 1.91481 1.94671 1.82724 1.43484 1.21193 0.99681 1.01721 0.89863 1.20500 1.02242 0.92343 0.99233 0.90936 0.84604 0.92080 0.93868 0.89461 0.76791 0.91527 0.83998 0.82170 0.81617 0.83175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.64 16 2 O -0.35 -8.55 10.47 -51.40 -0.54 -9.09 16 3 C 0.45 12.59 6.41 71.24 0.46 13.05 16 4 O -0.51 -16.47 16.04 28.40 0.46 -16.02 16 5 C 0.10 2.75 2.24 29.85 0.07 2.82 16 6 H 0.15 3.19 6.32 -2.39 -0.02 3.18 16 7 C 0.15 5.58 5.30 86.38 0.46 6.04 16 8 N -0.75 -32.15 5.44 -467.42 -2.54 -34.69 16 9 C 0.54 30.50 7.75 86.36 0.67 31.17 16 10 O -0.63 -41.12 15.02 -4.30 -0.06 -41.18 16 11 C -0.57 -31.42 9.54 24.83 0.24 -31.19 16 12 H 0.09 4.37 7.85 -2.91 -0.02 4.35 16 13 C 0.03 1.68 5.50 85.31 0.47 2.15 16 14 N -0.82 -49.35 11.83 21.84 0.26 -49.09 16 15 Si 1.00 40.00 29.56 68.60 2.03 42.03 16 16 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 17 H -0.28 -10.74 7.11 99.48 0.71 -10.03 16 18 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 19 O -0.29 -8.75 9.14 -73.82 -0.68 -9.43 16 20 C 0.10 2.68 6.37 22.49 0.14 2.82 16 21 C -0.18 -4.02 8.70 22.36 0.19 -3.82 16 22 C -0.11 -2.08 10.02 22.30 0.22 -1.86 16 23 C 0.05 0.98 7.30 22.37 0.16 1.15 16 24 F -0.14 -3.07 17.27 44.97 0.78 -2.29 16 25 C -0.11 -2.07 10.02 22.30 0.22 -1.84 16 26 C -0.12 -2.85 9.99 22.36 0.22 -2.63 16 27 H 0.07 1.10 8.13 -2.39 -0.02 1.08 16 28 H 0.14 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 30 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.09 3.23 8.11 -2.39 -0.02 3.21 16 32 H 0.40 14.80 8.33 -92.70 -0.77 14.03 16 33 H 0.27 15.02 8.29 -92.71 -0.77 14.25 16 34 H 0.14 2.67 5.68 -2.91 -0.02 2.65 16 35 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 36 H 0.17 2.34 8.06 -2.91 -0.02 2.31 16 37 H 0.15 3.17 8.06 -2.92 -0.02 3.14 16 Total: -1.00 -78.18 337.09 4.78 -73.41 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: 0.36 Total: 26.86 kcal Atomic # 6 Polarization: 14.77 SS G_CDS: 4.72 Total: 19.49 kcal Atomic # 7 Polarization: -81.50 SS G_CDS: -2.29 Total: -83.78 kcal Atomic # 8 Polarization: -74.90 SS G_CDS: -0.82 Total: -75.72 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.78 Total: -2.29 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.03 kcal Total: -78.18 4.78 -73.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357665731.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.420 kcal (2) G-P(sol) polarization free energy of solvation -78.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds