Wall clock time and date at job start Fri Apr 10 2020 14:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46505 * 119.99967 * 2 1 4 4 C 1.53001 * 115.55028 * 274.33210 * 3 2 1 5 5 O 1.42895 * 109.47268 * 330.58320 * 4 3 2 6 6 C 1.53000 * 117.49548 * 128.62370 * 3 2 1 7 7 C 1.53000 * 117.49814 * 60.00284 * 3 2 1 8 8 S 1.65595 * 120.00245 * 180.02562 * 2 1 3 9 9 O 1.42102 * 106.40357 * 336.46016 * 8 2 1 10 10 O 1.42098 * 106.40643 * 203.53657 * 8 2 1 11 11 C 1.76204 * 107.21974 * 89.99680 * 8 2 1 12 12 C 1.38656 * 119.87779 * 89.99889 * 11 8 2 13 13 C 1.38604 * 120.50302 * 179.97438 * 12 11 8 14 14 C 1.37638 * 120.24981 * 0.02562 * 13 12 11 15 15 C 1.40692 * 119.74467 * 0.02562 * 14 13 12 16 16 C 1.41396 * 120.24850 * 180.02562 * 15 14 13 17 17 H 1.07993 * 120.00514 * 204.38041 * 16 15 14 18 18 C 1.39943 * 119.99654 * 24.37701 * 16 15 14 19 19 N 1.30827 * 120.00487 * 17.87357 * 18 16 15 20 20 Si 1.86797 * 120.00240 * 197.86810 * 18 16 15 21 21 H 1.48503 * 109.47144 * 90.00129 * 20 18 16 22 22 H 1.48496 * 109.47572 * 210.00117 * 20 18 16 23 23 H 1.48498 * 109.47150 * 330.00472 * 20 18 16 24 24 C 1.37599 * 119.87451 * 270.02342 * 11 8 2 25 25 H 1.09007 * 109.46505 * 269.99707 * 1 2 3 26 26 H 1.08995 * 109.47408 * 29.99804 * 1 2 3 27 27 H 1.09005 * 109.47105 * 150.00148 * 1 2 3 28 28 H 1.08999 * 109.46926 * 90.58331 * 4 3 2 29 29 H 1.08996 * 109.47105 * 210.57971 * 4 3 2 30 30 H 0.96697 * 114.00605 * 179.97438 * 5 4 3 31 31 H 1.08995 * 117.50089 * 0.02562 * 6 3 2 32 32 H 1.09007 * 117.49636 * 145.02167 * 6 3 2 33 33 H 1.09000 * 117.49788 * 214.97860 * 7 3 2 34 34 H 1.09001 * 117.49487 * 359.97438 * 7 3 2 35 35 H 1.07998 * 119.74509 * 359.97438 * 12 11 8 36 36 H 1.08005 * 119.87338 * 179.72482 * 13 12 11 37 37 H 1.07997 * 120.12731 * 180.02562 * 14 13 12 38 38 H 0.96994 * 120.00731 * 180.02562 * 19 18 16 39 39 H 1.08005 * 120.12745 * 359.97438 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4372 1.8924 -1.3764 5 8 2.5207 0.8589 -2.3597 6 6 3.2844 1.4569 1.0603 7 6 1.9631 2.2198 1.1754 8 16 2.2930 -1.4341 -0.0006 9 8 1.4114 -2.4067 0.5434 10 8 3.5760 -1.1570 0.5438 11 6 2.5538 -1.8851 -1.6839 12 6 3.6972 -1.4607 -2.3435 13 6 3.9156 -1.8083 -3.6674 14 6 2.9971 -2.5799 -4.3423 15 6 1.8328 -3.0153 -3.6834 16 6 0.8824 -3.8088 -4.3664 17 1 -0.1470 -3.8190 -4.0401 18 6 1.2758 -4.5809 -5.4653 19 7 2.5414 -4.8530 -5.6542 20 14 -0.0063 -5.2232 -6.6625 21 1 -0.2108 -4.2308 -7.7482 22 1 0.4604 -6.5063 -7.2463 23 1 -1.2876 -5.4428 -5.9448 24 6 1.6217 -2.6567 -2.3390 25 1 -0.3632 -0.0001 1.0278 26 1 -0.3634 0.8899 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6117 2.5608 -1.6211 29 1 3.3696 2.4567 -1.3623 30 1 2.6718 1.1821 -3.2584 31 1 3.4547 0.6367 1.7576 32 1 4.1706 2.0251 0.7773 33 1 1.9800 3.2898 0.9681 34 1 1.2636 1.9016 1.9484 35 1 4.4230 -0.8546 -1.8218 36 1 4.8076 -1.4685 -4.1727 37 1 3.1695 -2.8499 -5.3737 38 1 2.8141 -5.3878 -6.4160 39 1 0.7318 -2.9863 -1.8233 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590757266.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:31:21 Heat of formation + Delta-G solvation = -63.755607 kcal Electronic energy + Delta-G solvation = -24852.097075 eV Core-core repulsion = 21273.957997 eV Total energy + Delta-G solvation = -3578.139078 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.102 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -38.78363 -37.47385 -36.54544 -35.69475 -35.14499 -33.69180 -33.31226 -29.91249 -29.60288 -26.91022 -25.84053 -25.31623 -22.43641 -21.72598 -20.86592 -20.56716 -18.37145 -17.55383 -17.10974 -16.68443 -16.02505 -15.71076 -15.30374 -14.88288 -14.72437 -14.45371 -14.17521 -13.40870 -13.37128 -13.19528 -13.06393 -12.50939 -12.37091 -11.93167 -11.77987 -11.72998 -11.41201 -11.32432 -11.29315 -11.20357 -11.08504 -10.89158 -10.70809 -10.58066 -10.48454 -10.26314 -9.65556 -9.51970 -9.44033 -9.22318 -8.69090 -7.82587 -7.49446 -6.79128 -4.38616 1.13714 2.42291 2.76825 3.05867 3.09727 3.16912 3.40515 3.66249 3.91863 4.24263 4.39875 4.53483 4.74390 4.81738 5.06973 5.24147 5.29866 5.42271 5.56056 5.58200 5.61824 5.62628 5.76276 5.96532 5.98445 6.17501 6.21403 6.23457 6.39437 6.79224 6.84524 6.92176 7.09581 7.20912 7.39028 7.58562 7.89557 7.92698 7.95264 8.10132 8.54639 8.81922 8.87958 10.16881 Molecular weight = 311.10amu Principal moments of inertia in cm(-1) A = 0.022942 B = 0.004587 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.159284 B = 6102.106365 C = 6265.731285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.961 5.961 3 C 0.103 3.897 4 C 0.100 3.900 5 O -0.538 6.538 6 C -0.157 4.157 7 C -0.172 4.172 8 S 2.688 3.312 9 O -0.977 6.977 10 O -0.973 6.973 11 C -0.611 4.611 12 C -0.094 4.094 13 C -0.132 4.132 14 C -0.113 4.113 15 C 0.090 3.910 16 C -0.466 4.466 17 H 0.079 0.921 18 C 0.076 3.924 19 N -0.800 5.800 20 Si 0.909 3.091 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.262 1.262 24 C -0.127 4.127 25 H 0.050 0.950 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.376 0.624 31 H 0.115 0.885 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.121 0.879 38 H 0.281 0.719 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.209 13.844 5.714 15.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.796 5.796 3 C 0.013 3.987 4 C 0.020 3.980 5 O -0.343 6.343 6 C -0.195 4.195 7 C -0.211 4.211 8 S 2.787 3.213 9 O -0.968 6.968 10 O -0.963 6.963 11 C -0.704 4.704 12 C -0.116 4.116 13 C -0.152 4.152 14 C -0.133 4.133 15 C 0.086 3.914 16 C -0.496 4.496 17 H 0.097 0.903 18 C -0.141 4.141 19 N -0.426 5.426 20 Si 0.733 3.267 21 H -0.194 1.194 22 H -0.203 1.203 23 H -0.186 1.186 24 C -0.149 4.149 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.224 0.776 31 H 0.134 0.866 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.111 0.889 37 H 0.139 0.861 38 H 0.092 0.908 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.947 12.850 6.879 14.607 hybrid contribution -0.552 0.102 -1.983 2.061 sum -1.499 12.952 4.897 13.928 Atomic orbital electron populations 1.21327 0.78564 1.03235 1.01118 1.56834 1.14142 1.18823 1.89754 1.20325 1.00341 0.87612 0.90415 1.21842 0.99030 0.89747 0.87378 1.86876 1.95688 1.32525 1.19176 1.23592 0.92335 1.02775 1.00764 1.23312 1.00887 0.97472 0.99446 1.01774 0.72525 0.71506 0.75497 1.93517 1.66742 1.58028 1.78469 1.93465 1.40256 1.84354 1.78274 1.29510 1.04709 1.13543 1.22628 1.19850 0.95549 1.01298 0.94890 1.20743 0.98758 1.00849 0.94808 1.21586 0.95164 0.96729 0.99840 1.17600 0.92725 0.90856 0.90191 1.19544 0.96554 1.22686 1.10852 0.90315 1.25874 0.95907 0.94637 0.97700 1.69791 1.16903 1.29377 1.26559 0.86299 0.81521 0.78427 0.80405 1.19357 1.20347 1.18588 1.20669 0.98149 1.01375 0.94692 0.93169 0.91439 0.90742 0.93625 0.93069 0.77632 0.86638 0.87673 0.88071 0.88092 0.88085 0.88930 0.86112 0.90838 0.87792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.41 10.19 59.85 0.61 2.02 16 2 N -0.96 -15.30 2.84 -107.75 -0.31 -15.61 16 3 C 0.10 1.37 2.02 -131.82 -0.27 1.10 16 4 C 0.10 1.17 7.29 37.16 0.27 1.44 16 5 O -0.54 -7.82 9.20 -35.23 -0.32 -8.14 16 6 C -0.16 -1.97 8.74 -26.73 -0.23 -2.20 16 7 C -0.17 -1.74 10.00 -26.73 -0.27 -2.01 16 8 S 2.69 54.31 5.57 -107.50 -0.60 53.71 16 9 O -0.98 -22.07 16.34 -57.17 -0.93 -23.01 16 10 O -0.97 -20.37 13.96 -57.17 -0.80 -21.17 16 11 C -0.61 -13.82 4.92 -39.66 -0.20 -14.01 16 12 C -0.09 -2.06 6.95 -39.29 -0.27 -2.34 16 13 C -0.13 -2.95 10.02 -39.67 -0.40 -3.35 16 14 C -0.11 -2.84 8.70 -38.87 -0.34 -3.18 16 15 C 0.09 2.36 5.58 -106.83 -0.60 1.76 16 16 C -0.47 -12.29 9.05 -37.74 -0.34 -12.63 16 17 H 0.08 2.00 7.91 -52.49 -0.42 1.59 16 18 C 0.08 1.89 5.14 -17.34 -0.09 1.80 16 19 N -0.80 -20.52 10.95 55.55 0.61 -19.91 16 20 Si 0.91 18.57 29.59 -169.99 -5.03 13.54 16 21 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 22 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 23 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 24 C -0.13 -3.16 9.26 -38.87 -0.36 -3.52 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.77 8.07 -51.93 -0.42 0.35 16 27 H 0.07 1.11 7.79 -51.93 -0.40 0.70 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.50 7.88 -51.93 -0.41 0.10 16 30 H 0.38 4.26 9.12 45.56 0.42 4.67 16 31 H 0.12 1.68 6.63 -51.93 -0.34 1.34 16 32 H 0.10 1.13 8.03 -51.93 -0.42 0.71 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.10 2.07 7.60 -52.49 -0.40 1.67 16 36 H 0.09 1.82 8.06 -52.48 -0.42 1.39 16 37 H 0.12 3.10 6.16 -52.49 -0.32 2.78 16 38 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 39 H 0.10 2.52 7.60 -52.48 -0.40 2.13 16 LS Contribution 333.36 15.07 5.02 5.02 Total: -1.00 -31.79 333.36 -9.20 -40.99 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -4.36 Total: 9.69 kcal Atomic # 6 Polarization: -32.64 SS G_CDS: -2.48 Total: -35.12 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.30 Total: -35.52 kcal Atomic # 8 Polarization: -50.27 SS G_CDS: -2.06 Total: -52.32 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Atomic # 16 Polarization: 54.31 SS G_CDS: -0.60 Total: 53.71 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.79 -9.20 -40.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590757266.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.764 kcal (2) G-P(sol) polarization free energy of solvation -31.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds