Wall clock time and date at job start Fri Apr 10 2020 14:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 119.99858 * 2 1 4 4 C 1.53006 * 115.54688 * 274.32711 * 3 2 1 5 5 O 1.42891 * 109.47174 * 330.58372 * 4 3 2 6 6 C 1.52998 * 117.50156 * 128.62068 * 3 2 1 7 7 C 1.52997 * 60.00171 * 252.50703 * 6 3 2 8 8 S 1.65589 * 119.99918 * 179.97438 * 2 1 3 9 9 O 1.42099 * 106.40549 * 343.13701 * 8 2 1 10 10 O 1.42099 * 106.40380 * 210.21896 * 8 2 1 11 11 C 1.76208 * 107.21893 * 96.67881 * 8 2 1 12 12 C 1.37639 * 120.12527 * 112.78535 * 11 8 2 13 13 C 1.38617 * 120.24558 * 180.02562 * 12 11 8 14 14 C 1.38657 * 120.49975 * 359.72500 * 13 12 11 15 15 C 1.37599 * 120.24906 * 0.55619 * 14 13 12 16 16 C 1.40692 * 120.12651 * 292.80684 * 11 8 2 17 17 C 1.41400 * 120.24433 * 0.02562 * 16 11 8 18 18 H 1.07994 * 119.99992 * 323.83828 * 17 16 11 19 19 C 1.39946 * 119.99808 * 143.84338 * 17 16 11 20 20 N 1.30818 * 120.00165 * 3.63137 * 19 17 16 21 21 Si 1.86803 * 119.99551 * 183.63395 * 19 17 16 22 22 H 1.48499 * 109.46919 * 60.00055 * 21 19 17 23 23 H 1.48498 * 109.46961 * 179.97438 * 21 19 17 24 24 H 1.48490 * 109.47272 * 299.99714 * 21 19 17 25 25 H 1.08998 * 109.47196 * 265.59204 * 1 2 3 26 26 H 1.09008 * 109.46819 * 25.59814 * 1 2 3 27 27 H 1.08998 * 109.46848 * 145.58977 * 1 2 3 28 28 H 1.09005 * 109.46934 * 90.58700 * 4 3 2 29 29 H 1.09010 * 109.46661 * 210.58310 * 4 3 2 30 30 H 0.96705 * 113.99946 * 180.02562 * 5 4 3 31 31 H 1.09004 * 117.49563 * 359.97438 * 6 3 2 32 32 H 1.08999 * 117.50134 * 145.02047 * 6 3 2 33 33 H 1.08995 * 117.50136 * 252.50669 * 7 6 3 34 34 H 1.09004 * 117.51806 * 107.47478 * 7 6 3 35 35 H 1.07994 * 119.87868 * 0.02562 * 12 11 8 36 36 H 1.07993 * 119.74782 * 179.97438 * 13 12 11 37 37 H 1.08000 * 119.87837 * 180.30022 * 14 13 12 38 38 H 1.08003 * 120.13019 * 179.71745 * 15 14 13 39 39 H 0.96998 * 120.00142 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4372 1.8922 -1.3765 5 8 2.5208 0.8586 -2.3596 6 6 3.2843 1.4571 1.0603 7 6 1.9631 2.2199 1.1753 8 16 2.2930 -1.4341 0.0006 9 8 1.3639 -2.4337 0.3965 10 8 3.5137 -1.1923 0.6866 11 6 2.7233 -1.7887 -1.6709 12 6 4.0425 -1.7718 -2.0630 13 6 4.3838 -2.0499 -3.3774 14 6 3.4035 -2.3533 -4.3100 15 6 2.0779 -2.3702 -3.9416 16 6 1.7197 -2.0896 -2.6098 17 6 0.3610 -2.1089 -2.2186 18 1 0.0863 -2.4710 -1.2390 19 6 -0.6276 -1.6588 -3.1009 20 7 -0.3031 -1.2871 -4.3125 21 14 -2.4107 -1.5887 -2.5485 22 1 -2.5316 -0.6799 -1.3803 23 1 -3.2537 -1.0800 -3.6601 24 1 -2.8642 -2.9499 -2.1658 25 1 -0.3633 -0.0790 1.0246 26 1 -0.3633 0.9269 -0.4441 27 1 -0.3633 -0.8478 -0.5807 28 1 1.6117 2.5607 -1.6213 29 1 3.3698 2.4566 -1.3623 30 1 2.6727 1.1819 -3.2583 31 1 3.4540 0.6371 1.7582 32 1 4.1704 2.0252 0.7773 33 1 1.9799 3.2898 0.9680 34 1 1.2635 1.9018 1.9483 35 1 4.8146 -1.5412 -1.3440 36 1 5.4214 -2.0340 -3.6765 37 1 3.6811 -2.5731 -5.3303 38 1 1.3155 -2.6023 -4.6706 39 1 -0.9883 -0.9748 -4.9239 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601414578.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:31:24 Heat of formation + Delta-G solvation = -57.667306 kcal Electronic energy + Delta-G solvation = -26063.827551 eV Core-core repulsion = 22485.952481 eV Total energy + Delta-G solvation = -3577.875070 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.102 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -38.44301 -37.44016 -36.21604 -35.30451 -34.75689 -33.73833 -32.82947 -30.03778 -29.37479 -26.58878 -25.75004 -24.99063 -22.17053 -21.53264 -20.97607 -20.20887 -17.77565 -17.49295 -16.79486 -16.47528 -15.95932 -15.46232 -15.28738 -14.74151 -14.35441 -14.21287 -13.82731 -13.21284 -13.06698 -12.87243 -12.74754 -12.61448 -12.04361 -11.89176 -11.48223 -11.44812 -11.30853 -11.19543 -11.06443 -11.00492 -10.89112 -10.67654 -10.43204 -10.27756 -10.22400 -9.90098 -9.76768 -9.36254 -9.16643 -8.99393 -8.27067 -7.78878 -7.30303 -6.80649 -4.61641 1.63888 2.52671 2.87028 3.00421 3.05486 3.19205 3.75085 3.86132 3.96745 4.54852 4.57448 4.84661 5.02286 5.10936 5.40600 5.56938 5.59277 5.68153 5.71782 5.80677 5.95623 6.04774 6.15856 6.16628 6.22760 6.38806 6.47607 6.51535 6.60624 6.72288 6.96412 7.15437 7.21956 7.42650 7.53306 7.68241 7.91300 7.96269 8.11376 8.29369 8.52772 8.71607 8.84466 10.10784 Molecular weight = 311.10amu Principal moments of inertia in cm(-1) A = 0.012883 B = 0.009219 C = 0.007216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.881085 B = 3036.611321 C = 3879.075372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.951 5.951 3 C 0.109 3.891 4 C 0.102 3.898 5 O -0.525 6.525 6 C -0.163 4.163 7 C -0.175 4.175 8 S 2.705 3.295 9 O -0.979 6.979 10 O -0.996 6.996 11 C -0.723 4.723 12 C 0.004 3.996 13 C -0.244 4.244 14 C -0.081 4.081 15 C -0.154 4.154 16 C 0.208 3.792 17 C -0.489 4.489 18 H 0.111 0.889 19 C 0.085 3.915 20 N -0.793 5.793 21 Si 0.899 3.101 22 H -0.256 1.256 23 H -0.278 1.278 24 H -0.260 1.260 25 H 0.036 0.964 26 H 0.059 0.941 27 H 0.101 0.899 28 H 0.041 0.959 29 H 0.044 0.956 30 H 0.371 0.629 31 H 0.119 0.881 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.126 0.874 39 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.070 8.084 3.245 8.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.784 5.784 3 C 0.019 3.981 4 C 0.022 3.978 5 O -0.328 6.328 6 C -0.201 4.201 7 C -0.214 4.214 8 S 2.806 3.194 9 O -0.970 6.970 10 O -0.987 6.987 11 C -0.819 4.819 12 C -0.016 4.016 13 C -0.264 4.264 14 C -0.100 4.100 15 C -0.174 4.174 16 C 0.204 3.796 17 C -0.518 4.518 18 H 0.129 0.871 19 C -0.134 4.134 20 N -0.418 5.418 21 Si 0.723 3.277 22 H -0.180 1.180 23 H -0.203 1.203 24 H -0.184 1.184 25 H 0.055 0.945 26 H 0.078 0.922 27 H 0.119 0.881 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.217 0.783 31 H 0.137 0.863 32 H 0.119 0.881 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.144 0.856 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.984 7.288 4.344 8.542 hybrid contribution -0.743 0.841 -1.386 1.783 sum 0.241 8.129 2.958 8.654 Atomic orbital electron populations 1.21799 0.78580 1.04645 1.00428 1.56610 1.14004 1.18200 1.89540 1.20261 0.99825 0.87987 0.90038 1.21782 0.98316 0.89864 0.87843 1.86924 1.95613 1.31743 1.18519 1.23642 0.92147 1.02938 1.01366 1.23268 1.00856 0.97323 0.99983 1.01001 0.71801 0.71605 0.75010 1.93464 1.63800 1.56416 1.83297 1.93396 1.46080 1.85410 1.73796 1.29692 1.00667 1.28446 1.23078 1.20102 0.93639 0.92710 0.95147 1.20435 0.97041 1.14767 0.94196 1.20885 0.94174 0.98032 0.96903 1.21617 0.94250 1.03693 0.97877 1.16895 0.90837 0.81507 0.90385 1.20300 0.91041 1.37537 1.02961 0.87127 1.25840 1.00969 0.92604 0.93951 1.69754 1.35680 1.31155 1.05204 0.86528 0.81214 0.80438 0.79499 1.18012 1.20325 1.18412 0.94502 0.92239 0.88131 0.94056 0.93807 0.78313 0.86265 0.88123 0.88427 0.88261 0.88069 0.89291 0.89356 0.85617 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.70 9.91 59.85 0.59 2.29 16 2 N -0.95 -18.66 2.84 -107.75 -0.31 -18.97 16 3 C 0.11 1.81 2.05 -131.82 -0.27 1.54 16 4 C 0.10 1.56 7.29 37.16 0.27 1.83 16 5 O -0.52 -9.66 10.19 -35.23 -0.36 -10.02 16 6 C -0.16 -2.47 8.86 -26.73 -0.24 -2.71 16 7 C -0.18 -2.29 10.00 -26.73 -0.27 -2.56 16 8 S 2.71 61.81 5.09 -107.50 -0.55 61.27 16 9 O -0.98 -24.64 14.62 -57.17 -0.84 -25.48 16 10 O -1.00 -22.81 13.64 -57.17 -0.78 -23.59 16 11 C -0.72 -17.34 3.85 -38.87 -0.15 -17.49 16 12 C 0.00 0.09 9.17 -39.66 -0.36 -0.27 16 13 C -0.24 -5.31 10.05 -39.29 -0.39 -5.70 16 14 C -0.08 -1.81 10.02 -39.66 -0.40 -2.20 16 15 C -0.15 -3.80 8.65 -38.87 -0.34 -4.13 16 16 C 0.21 5.24 5.19 -106.82 -0.55 4.69 16 17 C -0.49 -12.25 6.14 -37.74 -0.23 -12.48 16 18 H 0.11 2.86 4.51 -52.49 -0.24 2.62 16 19 C 0.08 1.98 5.36 -17.34 -0.09 1.89 16 20 N -0.79 -18.74 10.72 55.55 0.60 -18.14 16 21 Si 0.90 17.86 28.32 -169.99 -4.81 13.05 16 22 H -0.26 -4.80 7.00 56.52 0.40 -4.41 16 23 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 24 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 1.01 8.04 -51.92 -0.42 0.59 16 27 H 0.10 2.12 2.71 -51.93 -0.14 1.98 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.04 0.57 7.88 -51.92 -0.41 0.16 16 30 H 0.37 5.84 9.12 45.56 0.42 6.26 16 31 H 0.12 2.04 6.39 -51.93 -0.33 1.71 16 32 H 0.10 1.32 8.03 -51.93 -0.42 0.90 16 33 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.10 2.19 7.32 -52.49 -0.38 1.81 16 36 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.13 3.18 6.29 -52.48 -0.33 2.85 16 39 H 0.28 6.12 8.30 -40.82 -0.34 5.78 16 LS Contribution 320.45 15.07 4.83 4.83 Total: -1.00 -28.93 320.45 -8.58 -37.50 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -3.93 Total: 14.85 kcal Atomic # 6 Polarization: -32.86 SS G_CDS: -2.43 Total: -35.29 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 0.29 Total: -37.11 kcal Atomic # 8 Polarization: -57.12 SS G_CDS: -1.98 Total: -59.09 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -4.81 Total: 13.05 kcal Atomic # 16 Polarization: 61.81 SS G_CDS: -0.55 Total: 61.27 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.93 -8.58 -37.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601414578.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.164 kcal (2) G-P(sol) polarization free energy of solvation -28.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds