Wall clock time and date at job start Fri Apr 10 2020 14:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 119.99858 * 2 1 4 4 C 1.53006 * 115.54688 * 274.32711 * 3 2 1 5 5 O 1.42891 * 109.47174 * 330.58372 * 4 3 2 6 6 C 1.52998 * 117.50156 * 128.62068 * 3 2 1 7 7 C 1.52997 * 60.00171 * 252.50703 * 6 3 2 8 8 S 1.65589 * 119.99918 * 179.97438 * 2 1 3 9 9 O 1.42099 * 106.40549 * 343.13701 * 8 2 1 10 10 O 1.42099 * 106.40380 * 210.21896 * 8 2 1 11 11 C 1.76208 * 107.21893 * 96.67881 * 8 2 1 12 12 C 1.37639 * 120.12527 * 112.78535 * 11 8 2 13 13 C 1.38617 * 120.24558 * 180.02562 * 12 11 8 14 14 C 1.38657 * 120.49975 * 359.72500 * 13 12 11 15 15 C 1.37599 * 120.24906 * 0.55619 * 14 13 12 16 16 C 1.40692 * 120.12651 * 292.80684 * 11 8 2 17 17 C 1.41400 * 120.24433 * 0.02562 * 16 11 8 18 18 H 1.07994 * 119.99992 * 323.83828 * 17 16 11 19 19 C 1.39946 * 119.99808 * 143.84338 * 17 16 11 20 20 N 1.30818 * 120.00165 * 3.63137 * 19 17 16 21 21 Si 1.86803 * 119.99551 * 183.63395 * 19 17 16 22 22 H 1.48499 * 109.46919 * 60.00055 * 21 19 17 23 23 H 1.48498 * 109.46961 * 179.97438 * 21 19 17 24 24 H 1.48490 * 109.47272 * 299.99714 * 21 19 17 25 25 H 1.08998 * 109.47196 * 265.59204 * 1 2 3 26 26 H 1.09008 * 109.46819 * 25.59814 * 1 2 3 27 27 H 1.08998 * 109.46848 * 145.58977 * 1 2 3 28 28 H 1.09005 * 109.46934 * 90.58700 * 4 3 2 29 29 H 1.09010 * 109.46661 * 210.58310 * 4 3 2 30 30 H 0.96705 * 113.99946 * 180.02562 * 5 4 3 31 31 H 1.09004 * 117.49563 * 359.97438 * 6 3 2 32 32 H 1.08999 * 117.50134 * 145.02047 * 6 3 2 33 33 H 1.08995 * 117.50136 * 252.50669 * 7 6 3 34 34 H 1.09004 * 117.51806 * 107.47478 * 7 6 3 35 35 H 1.07994 * 119.87868 * 0.02562 * 12 11 8 36 36 H 1.07993 * 119.74782 * 179.97438 * 13 12 11 37 37 H 1.08000 * 119.87837 * 180.30022 * 14 13 12 38 38 H 1.08003 * 120.13019 * 179.71745 * 15 14 13 39 39 H 0.96998 * 120.00142 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4372 1.8922 -1.3765 5 8 2.5208 0.8586 -2.3596 6 6 3.2843 1.4571 1.0603 7 6 1.9631 2.2199 1.1753 8 16 2.2930 -1.4341 0.0006 9 8 1.3639 -2.4337 0.3965 10 8 3.5137 -1.1923 0.6866 11 6 2.7233 -1.7887 -1.6709 12 6 4.0425 -1.7718 -2.0630 13 6 4.3838 -2.0499 -3.3774 14 6 3.4035 -2.3533 -4.3100 15 6 2.0779 -2.3702 -3.9416 16 6 1.7197 -2.0896 -2.6098 17 6 0.3610 -2.1089 -2.2186 18 1 0.0863 -2.4710 -1.2390 19 6 -0.6276 -1.6588 -3.1009 20 7 -0.3031 -1.2871 -4.3125 21 14 -2.4107 -1.5887 -2.5485 22 1 -2.5316 -0.6799 -1.3803 23 1 -3.2537 -1.0800 -3.6601 24 1 -2.8642 -2.9499 -2.1658 25 1 -0.3633 -0.0790 1.0246 26 1 -0.3633 0.9269 -0.4441 27 1 -0.3633 -0.8478 -0.5807 28 1 1.6117 2.5607 -1.6213 29 1 3.3698 2.4566 -1.3623 30 1 2.6727 1.1819 -3.2583 31 1 3.4540 0.6371 1.7582 32 1 4.1704 2.0252 0.7773 33 1 1.9799 3.2898 0.9680 34 1 1.2635 1.9018 1.9483 35 1 4.8146 -1.5412 -1.3440 36 1 5.4214 -2.0340 -3.6765 37 1 3.6811 -2.5731 -5.3303 38 1 1.3155 -2.6023 -4.6706 39 1 -0.9883 -0.9748 -4.9239 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601414578.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:31:23 Heat of formation + Delta-G solvation = -77.733156 kcal Electronic energy + Delta-G solvation = -26064.697672 eV Core-core repulsion = 22485.952481 eV Total energy + Delta-G solvation = -3578.745190 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.102 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.68451 -39.22100 -38.01868 -36.70487 -36.49425 -35.49704 -34.24680 -31.82495 -31.17397 -27.84897 -27.34201 -26.57526 -23.32474 -23.26093 -22.76069 -21.59375 -19.49149 -19.23932 -18.18278 -17.98068 -17.58464 -17.08252 -16.88786 -16.21293 -15.92658 -15.68079 -15.14115 -14.93319 -14.79395 -14.34675 -14.25021 -14.13451 -13.67164 -13.57673 -13.09584 -12.95493 -12.91993 -12.85241 -12.80397 -12.61025 -12.38336 -12.18077 -12.06798 -11.78637 -11.55682 -11.52201 -11.22351 -11.06767 -10.79195 -10.33415 -9.77080 -9.53309 -9.11925 -8.55537 -6.45431 -0.06552 0.73839 1.14692 1.40104 1.47995 1.53807 2.22672 2.25769 2.73265 2.79833 3.11977 3.39434 3.56620 3.79992 3.87515 4.17030 4.25153 4.42951 4.44255 4.61973 4.63860 4.73180 4.76339 4.81228 4.83957 4.86745 5.12727 5.13936 5.16541 5.24314 5.33654 5.36289 5.46649 5.73009 5.85895 6.00279 6.09502 6.15326 6.30934 6.68981 6.90795 7.02727 7.11238 8.37212 Molecular weight = 311.10amu Principal moments of inertia in cm(-1) A = 0.012883 B = 0.009219 C = 0.007216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.881085 B = 3036.611321 C = 3879.075372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.946 5.946 3 C 0.074 3.926 4 C 0.101 3.899 5 O -0.555 6.555 6 C -0.173 4.173 7 C -0.141 4.141 8 S 2.711 3.289 9 O -1.011 7.011 10 O -1.003 7.003 11 C -0.733 4.733 12 C -0.006 4.006 13 C -0.241 4.241 14 C -0.078 4.078 15 C -0.179 4.179 16 C 0.189 3.811 17 C -0.509 4.509 18 H 0.096 0.904 19 C 0.058 3.942 20 N -0.811 5.811 21 Si 0.944 3.056 22 H -0.238 1.238 23 H -0.266 1.266 24 H -0.268 1.268 25 H 0.055 0.945 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.377 0.623 31 H 0.094 0.906 32 H 0.121 0.879 33 H 0.133 0.867 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.124 10.231 3.460 10.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.782 5.782 3 C -0.016 4.016 4 C 0.021 3.979 5 O -0.359 6.359 6 C -0.211 4.211 7 C -0.180 4.180 8 S 2.812 3.188 9 O -1.002 7.002 10 O -0.994 6.994 11 C -0.828 4.828 12 C -0.026 4.026 13 C -0.261 4.261 14 C -0.097 4.097 15 C -0.199 4.199 16 C 0.185 3.815 17 C -0.538 4.538 18 H 0.113 0.887 19 C -0.159 4.159 20 N -0.436 5.436 21 Si 0.765 3.235 22 H -0.162 1.162 23 H -0.190 1.190 24 H -0.193 1.193 25 H 0.073 0.927 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.224 0.776 31 H 0.113 0.887 32 H 0.139 0.861 33 H 0.151 0.849 34 H 0.121 0.879 35 H 0.127 0.873 36 H 0.137 0.863 37 H 0.132 0.868 38 H 0.129 0.871 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.061 9.438 4.548 10.530 hybrid contribution -0.664 0.203 -1.438 1.597 sum 0.397 9.641 3.109 10.138 Atomic orbital electron populations 1.21866 0.78248 1.04570 1.01373 1.56290 1.14188 1.18383 1.89291 1.20758 1.01270 0.87743 0.91791 1.21957 1.00110 0.89366 0.86430 1.86893 1.95845 1.33708 1.19473 1.23676 0.93801 1.03145 1.00461 1.23416 0.98757 0.98472 0.97329 1.00657 0.71552 0.72070 0.74565 1.93414 1.64570 1.58518 1.83712 1.93383 1.46518 1.85710 1.73771 1.29912 1.01032 1.28377 1.23435 1.20326 0.93483 0.92807 0.95995 1.20753 0.98421 1.13315 0.93587 1.21152 0.93369 0.96817 0.98329 1.21596 0.95076 1.05559 0.97702 1.17095 0.91357 0.82124 0.90953 1.20277 0.91747 1.38988 1.02837 0.88656 1.26397 1.03844 0.91843 0.93793 1.69795 1.36871 1.31176 1.05772 0.85843 0.77186 0.80345 0.80116 1.16161 1.19048 1.19269 0.92671 0.90354 0.90475 0.92646 0.91349 0.77620 0.88743 0.86066 0.84859 0.87903 0.87295 0.86312 0.86762 0.87061 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 3.08 9.91 127.77 1.27 4.35 16 2 N -0.95 -36.37 2.84 -494.81 -1.40 -37.77 16 3 C 0.07 2.28 2.05 3.61 0.01 2.29 16 4 C 0.10 2.84 7.29 71.98 0.52 3.36 16 5 O -0.55 -19.97 10.19 -148.98 -1.52 -21.48 16 6 C -0.17 -4.85 8.86 30.59 0.27 -4.58 16 7 C -0.14 -3.17 10.00 30.59 0.31 -2.86 16 8 S 2.71 125.13 5.09 -56.49 -0.29 124.85 16 9 O -1.01 -52.36 14.62 -128.00 -1.87 -54.23 16 10 O -1.00 -46.15 13.64 -128.00 -1.75 -47.90 16 11 C -0.73 -35.49 3.85 22.73 0.09 -35.40 16 12 C -0.01 -0.28 9.17 22.22 0.20 -0.07 16 13 C -0.24 -10.13 10.05 22.46 0.23 -9.90 16 14 C -0.08 -3.42 10.02 22.22 0.22 -3.19 16 15 C -0.18 -8.94 8.65 22.73 0.20 -8.74 16 16 C 0.19 9.70 5.19 -21.29 -0.11 9.59 16 17 C -0.51 -26.11 6.14 23.46 0.14 -25.96 16 18 H 0.10 5.11 4.51 -2.91 -0.01 5.10 16 19 C 0.06 2.74 5.36 85.26 0.46 3.19 16 20 N -0.81 -38.65 10.72 21.83 0.23 -38.42 16 21 Si 0.94 36.22 28.32 68.60 1.94 38.16 16 22 H -0.24 -8.38 7.00 99.48 0.70 -7.69 16 23 H -0.27 -9.59 7.11 99.48 0.71 -8.88 16 24 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 25 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.08 2.50 8.04 -2.38 -0.02 2.48 16 27 H 0.08 3.25 2.71 -2.39 -0.01 3.24 16 28 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 29 H 0.07 1.56 7.88 -2.38 -0.02 1.54 16 30 H 0.38 11.73 9.12 -74.05 -0.68 11.05 16 31 H 0.09 3.15 6.39 -2.38 -0.02 3.13 16 32 H 0.12 2.82 8.03 -2.39 -0.02 2.80 16 33 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.11 4.66 7.32 -2.91 -0.02 4.64 16 36 H 0.12 4.23 8.06 -2.91 -0.02 4.21 16 37 H 0.11 4.31 8.06 -2.91 -0.02 4.29 16 38 H 0.11 5.78 6.29 -2.91 -0.02 5.76 16 39 H 0.29 12.50 8.30 -92.71 -0.77 11.73 16 Total: -1.00 -63.33 320.45 -0.44 -63.77 By element: Atomic # 1 Polarization: 40.56 SS G_CDS: 0.41 Total: 40.97 kcal Atomic # 6 Polarization: -71.74 SS G_CDS: 3.80 Total: -67.94 kcal Atomic # 7 Polarization: -75.02 SS G_CDS: -1.17 Total: -76.19 kcal Atomic # 8 Polarization: -118.48 SS G_CDS: -5.14 Total: -123.61 kcal Atomic # 14 Polarization: 36.22 SS G_CDS: 1.94 Total: 38.16 kcal Atomic # 16 Polarization: 125.13 SS G_CDS: -0.29 Total: 124.85 kcal Total: -63.33 -0.44 -63.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601414578.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.964 kcal (2) G-P(sol) polarization free energy of solvation -63.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds