Wall clock time and date at job start Fri Apr 10 2020 14:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35950 * 117.00122 * 2 1 4 4 C 1.38659 * 120.06391 * 0.02562 * 3 2 1 5 5 C 1.38180 * 119.97116 * 179.70622 * 4 3 2 6 6 C 1.38267 * 120.09560 * 0.55210 * 5 4 3 7 7 C 1.50693 * 119.93704 * 179.72281 * 6 5 4 8 8 C 1.50697 * 109.47486 * 269.72584 * 7 6 5 9 9 O 1.20833 * 119.99747 * 0.02562 * 8 7 6 10 10 O 1.34230 * 120.00262 * 179.72204 * 8 7 6 11 11 C 1.45202 * 116.99836 * 180.27336 * 10 8 7 12 12 C 1.50701 * 109.46859 * 180.02562 * 11 10 8 13 13 O 1.21285 * 120.00079 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99566 * 180.02562 * 12 11 10 15 15 C 1.37102 * 119.99580 * 180.02562 * 14 12 11 16 16 H 1.07995 * 120.00075 * 0.02562 * 15 14 12 17 17 C 1.38949 * 119.99723 * 179.97438 * 15 14 12 18 18 N 1.31412 * 120.00524 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99739 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47140 * 60.00478 * 19 17 15 21 21 H 1.48501 * 109.46843 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46999 * 300.00350 * 19 17 15 23 23 C 1.38254 * 120.12214 * 359.45258 * 6 5 4 24 24 C 1.38336 * 120.03138 * 0.26747 * 23 6 5 25 25 F 1.35103 * 120.04783 * 179.97438 * 24 23 6 26 26 H 1.08999 * 109.46845 * 60.00528 * 1 2 3 27 27 H 1.08997 * 109.47444 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47535 * 300.00297 * 1 2 3 29 29 H 1.08004 * 120.01598 * 359.97438 * 4 3 2 30 30 H 1.08005 * 119.95483 * 180.30080 * 5 4 3 31 31 H 1.09004 * 109.47069 * 149.72786 * 7 6 5 32 32 H 1.09000 * 109.47237 * 29.73292 * 7 6 5 33 33 H 1.08998 * 109.47630 * 300.00638 * 11 10 8 34 34 H 1.09004 * 109.46770 * 60.01042 * 11 10 8 35 35 H 0.97001 * 120.00823 * 359.97438 * 14 12 11 36 36 H 0.96995 * 120.00385 * 179.97438 * 18 17 15 37 37 H 1.08003 * 119.98470 * 180.25657 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2923 2.3751 0.0005 5 6 1.9216 3.6052 0.0067 6 6 3.3024 3.6777 0.0008 7 6 3.9850 5.0212 0.0012 8 6 4.2123 5.4696 -1.4195 9 8 3.8561 4.7702 -2.3381 10 8 4.8050 6.6488 -1.6644 11 6 4.9861 7.0190 -3.0567 12 6 5.6631 8.3630 -3.1351 13 8 5.9639 8.9509 -2.1177 14 7 5.9344 8.9118 -4.3358 15 6 6.5508 10.1344 -4.4071 16 1 6.8194 10.6574 -3.5013 17 6 6.8310 10.6999 -5.6450 18 7 6.5047 10.0633 -6.7474 19 14 7.6702 12.3660 -5.7422 20 1 8.9939 12.2932 -5.0733 21 1 7.8548 12.7448 -7.1662 22 1 6.8284 13.3845 -5.0646 23 6 4.0579 2.5198 0.0001 24 6 3.4333 1.2855 -0.0002 25 9 4.1712 0.1539 -0.0014 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 0.2137 2.3201 0.0005 30 1 1.3341 4.5115 0.0120 31 1 4.9431 4.9417 0.5148 32 1 3.3562 5.7480 0.5155 33 1 5.6042 6.2715 -3.5540 34 1 4.0144 7.0721 -3.5478 35 1 5.6942 8.4416 -5.1495 36 1 6.6999 10.4583 -7.6115 37 1 5.1363 2.5790 -0.0003 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731236885.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:33:24 Heat of formation + Delta-G solvation = -177.661635 kcal Electronic energy + Delta-G solvation = -24148.768956 eV Core-core repulsion = 19999.477366 eV Total energy + Delta-G solvation = -4149.291590 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.105 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -48.97469 -40.67472 -40.07461 -38.33776 -37.82869 -36.05191 -34.00942 -32.65228 -31.38797 -31.05850 -29.09464 -28.14697 -26.80305 -24.59615 -23.12102 -22.43795 -20.66218 -19.58515 -18.65214 -18.08514 -17.59916 -17.33510 -17.11220 -16.45911 -16.33766 -16.17400 -15.47627 -15.29508 -15.14317 -14.63634 -14.54916 -14.48025 -14.19236 -13.92475 -13.37251 -13.00218 -12.65770 -12.55977 -12.49159 -12.02784 -11.95853 -11.90871 -11.62626 -11.48302 -11.40747 -11.11895 -10.49747 -10.43716 -10.41843 -10.29047 -9.60413 -9.23650 -8.54465 -8.44813 -8.09228 -6.50588 -3.92841 0.83305 0.84438 2.29800 2.66515 2.77469 3.14910 3.22264 3.25779 3.33463 3.73017 3.90773 4.11556 4.25169 4.33274 4.55990 4.69718 4.73982 4.80632 4.88016 5.03055 5.07933 5.10454 5.14464 5.17419 5.31766 5.50552 5.58081 5.68973 5.73088 5.78923 6.04847 6.11995 6.28197 6.63091 6.90856 7.46842 7.83562 7.95517 8.47691 9.06167 9.38505 9.88379 10.66515 Molecular weight = 311.10amu Principal moments of inertia in cm(-1) A = 0.036252 B = 0.002104 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.185923 B =13305.591731 C =13360.855072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.311 6.311 3 C 0.097 3.903 4 C -0.180 4.180 5 C -0.070 4.070 6 C -0.081 4.081 7 C -0.070 4.070 8 C 0.457 3.543 9 O -0.506 6.506 10 O -0.326 6.326 11 C 0.061 3.939 12 C 0.438 3.562 13 O -0.577 6.577 14 N -0.553 5.553 15 C -0.303 4.303 16 H 0.106 0.894 17 C 0.025 3.975 18 N -0.897 5.897 19 Si 0.935 3.065 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.272 1.272 23 C -0.098 4.098 24 C 0.070 3.930 25 F -0.132 7.132 26 H 0.059 0.941 27 H 0.102 0.898 28 H 0.058 0.942 29 H 0.139 0.861 30 H 0.135 0.865 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.395 0.605 36 H 0.274 0.726 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.010 -17.312 12.900 24.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.224 6.224 3 C 0.050 3.950 4 C -0.199 4.199 5 C -0.088 4.088 6 C -0.082 4.082 7 C -0.107 4.107 8 C 0.299 3.701 9 O -0.395 6.395 10 O -0.240 6.240 11 C -0.016 4.016 12 C 0.223 3.777 13 O -0.461 6.461 14 N -0.190 5.190 15 C -0.432 4.432 16 H 0.123 0.877 17 C -0.178 4.178 18 N -0.538 5.538 19 Si 0.762 3.238 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.198 1.198 23 C -0.116 4.116 24 C 0.050 3.950 25 F -0.111 7.111 26 H 0.077 0.923 27 H 0.121 0.879 28 H 0.076 0.924 29 H 0.157 0.843 30 H 0.153 0.847 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.229 0.771 36 H 0.084 0.916 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.767 -17.282 13.069 24.656 hybrid contribution 0.081 0.354 -0.940 1.008 sum -11.686 -16.927 12.129 23.879 Atomic orbital electron populations 1.23128 0.77845 1.04313 1.01620 1.86132 1.21805 1.25824 1.88663 1.19017 0.90823 0.85659 0.99466 1.21084 1.00326 0.91278 1.07208 1.20898 0.93638 0.97602 0.96697 1.19027 0.93368 0.93185 1.02615 1.20220 1.04192 0.94573 0.91728 1.23557 0.74674 0.79463 0.92411 1.90687 1.47532 1.54635 1.46622 1.86544 1.71172 1.36087 1.30233 1.22744 1.02004 0.97582 0.79306 1.19327 0.86268 0.87010 0.85138 1.90557 1.57325 1.63765 1.34430 1.41708 1.52426 1.19011 1.05836 1.19677 1.34655 0.94582 0.94313 0.87652 1.25320 0.97694 1.00128 0.94636 1.69604 1.46919 1.39275 0.97970 0.85849 0.79702 0.81163 0.77120 1.19742 1.20879 1.19753 1.20879 1.01119 0.89697 0.99939 1.16850 0.85909 0.82914 1.09288 1.91504 1.76387 1.48900 1.94309 0.92282 0.87934 0.92372 0.84290 0.84746 0.86268 0.86169 0.89554 0.89570 0.77149 0.91560 0.83796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.21 10.36 -19.58 -0.20 -3.41 16 3 C 0.10 1.05 6.69 -39.18 -0.26 0.78 16 4 C -0.18 -1.59 9.04 -39.45 -0.36 -1.95 16 5 C -0.07 -0.64 9.69 -39.59 -0.38 -1.02 16 6 C -0.08 -0.83 4.37 -104.61 -0.46 -1.29 16 7 C -0.07 -0.68 5.94 -29.04 -0.17 -0.86 16 8 C 0.46 6.69 7.95 36.00 0.29 6.97 16 9 O -0.51 -8.57 15.78 -18.76 -0.30 -8.87 16 10 O -0.33 -5.80 9.75 -45.90 -0.45 -6.25 16 11 C 0.06 1.15 5.94 36.01 0.21 1.36 16 12 C 0.44 10.46 7.86 -10.99 -0.09 10.38 16 13 O -0.58 -15.87 16.08 -14.11 -0.23 -16.09 16 14 N -0.55 -13.91 5.29 -10.97 -0.06 -13.96 16 15 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 16 H 0.11 3.01 7.16 -52.49 -0.38 2.63 16 17 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 18 N -0.90 -24.00 13.05 55.50 0.72 -23.28 16 19 Si 0.94 20.61 29.55 -169.99 -5.02 15.59 16 20 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 21 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 23 C -0.10 -1.05 9.67 -39.54 -0.38 -1.43 16 24 C 0.07 0.83 7.31 -39.30 -0.29 0.55 16 25 F -0.13 -1.72 17.11 2.25 0.04 -1.68 16 26 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 27 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.24 7.66 -51.93 -0.40 -0.15 16 29 H 0.14 0.85 6.30 -52.48 -0.33 0.51 16 30 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 31 H 0.12 0.94 8.08 -51.93 -0.42 0.52 16 32 H 0.12 0.90 8.08 -51.93 -0.42 0.48 16 33 H 0.09 1.49 8.13 -51.93 -0.42 1.07 16 34 H 0.09 1.47 8.13 -51.93 -0.42 1.05 16 35 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 36 H 0.27 6.94 8.31 -40.82 -0.34 6.61 16 37 H 0.14 1.32 8.06 -52.48 -0.42 0.90 16 LS Contribution 339.45 15.07 5.12 5.12 Total: -1.00 -34.40 339.45 -5.43 -39.83 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -3.91 Total: 6.30 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: -1.14 Total: 6.72 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.67 Total: -37.24 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -1.17 Total: -34.62 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.40 -5.43 -39.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731236885.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.835 kcal (2) G-P(sol) polarization free energy of solvation -34.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds