Wall clock time and date at job start Fri Apr 10 2020 14:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35950 * 117.00122 * 2 1 4 4 C 1.38659 * 120.06391 * 0.02562 * 3 2 1 5 5 C 1.38180 * 119.97116 * 179.70622 * 4 3 2 6 6 C 1.38267 * 120.09560 * 0.55210 * 5 4 3 7 7 C 1.50693 * 119.93704 * 179.72281 * 6 5 4 8 8 C 1.50697 * 109.47486 * 269.72584 * 7 6 5 9 9 O 1.20833 * 119.99747 * 0.02562 * 8 7 6 10 10 O 1.34230 * 120.00262 * 179.72204 * 8 7 6 11 11 C 1.45202 * 116.99836 * 180.27336 * 10 8 7 12 12 C 1.50701 * 109.46859 * 180.02562 * 11 10 8 13 13 O 1.21285 * 120.00079 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99566 * 180.02562 * 12 11 10 15 15 C 1.37102 * 119.99580 * 180.02562 * 14 12 11 16 16 H 1.07995 * 120.00075 * 0.02562 * 15 14 12 17 17 C 1.38949 * 119.99723 * 179.97438 * 15 14 12 18 18 N 1.31412 * 120.00524 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99739 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47140 * 60.00478 * 19 17 15 21 21 H 1.48501 * 109.46843 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46999 * 300.00350 * 19 17 15 23 23 C 1.38254 * 120.12214 * 359.45258 * 6 5 4 24 24 C 1.38336 * 120.03138 * 0.26747 * 23 6 5 25 25 F 1.35103 * 120.04783 * 179.97438 * 24 23 6 26 26 H 1.08999 * 109.46845 * 60.00528 * 1 2 3 27 27 H 1.08997 * 109.47444 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47535 * 300.00297 * 1 2 3 29 29 H 1.08004 * 120.01598 * 359.97438 * 4 3 2 30 30 H 1.08005 * 119.95483 * 180.30080 * 5 4 3 31 31 H 1.09004 * 109.47069 * 149.72786 * 7 6 5 32 32 H 1.09000 * 109.47237 * 29.73292 * 7 6 5 33 33 H 1.08998 * 109.47630 * 300.00638 * 11 10 8 34 34 H 1.09004 * 109.46770 * 60.01042 * 11 10 8 35 35 H 0.97001 * 120.00823 * 359.97438 * 14 12 11 36 36 H 0.96995 * 120.00385 * 179.97438 * 18 17 15 37 37 H 1.08003 * 119.98470 * 180.25657 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2923 2.3751 0.0005 5 6 1.9216 3.6052 0.0067 6 6 3.3024 3.6777 0.0008 7 6 3.9850 5.0212 0.0012 8 6 4.2123 5.4696 -1.4195 9 8 3.8561 4.7702 -2.3381 10 8 4.8050 6.6488 -1.6644 11 6 4.9861 7.0190 -3.0567 12 6 5.6631 8.3630 -3.1351 13 8 5.9639 8.9509 -2.1177 14 7 5.9344 8.9118 -4.3358 15 6 6.5508 10.1344 -4.4071 16 1 6.8194 10.6574 -3.5013 17 6 6.8310 10.6999 -5.6450 18 7 6.5047 10.0633 -6.7474 19 14 7.6702 12.3660 -5.7422 20 1 8.9939 12.2932 -5.0733 21 1 7.8548 12.7448 -7.1662 22 1 6.8284 13.3845 -5.0646 23 6 4.0579 2.5198 0.0001 24 6 3.4333 1.2855 -0.0002 25 9 4.1712 0.1539 -0.0014 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 0.2137 2.3201 0.0005 30 1 1.3341 4.5115 0.0120 31 1 4.9431 4.9417 0.5148 32 1 3.3562 5.7480 0.5155 33 1 5.6042 6.2715 -3.5540 34 1 4.0144 7.0721 -3.5478 35 1 5.6942 8.4416 -5.1495 36 1 6.6999 10.4583 -7.6115 37 1 5.1363 2.5790 -0.0003 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731236885.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:33:22 Heat of formation + Delta-G solvation = -199.668667 kcal Electronic energy + Delta-G solvation = -24149.723253 eV Core-core repulsion = 19999.477366 eV Total energy + Delta-G solvation = -4150.245887 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.105 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -49.87138 -41.75346 -40.96589 -40.03677 -38.75931 -37.37562 -36.02166 -33.50504 -33.36359 -31.78250 -30.33879 -29.08749 -27.62101 -26.45646 -23.85052 -23.37069 -21.72050 -21.40197 -20.06590 -19.35630 -18.83085 -18.16286 -18.11732 -17.63524 -17.52339 -17.23610 -17.05038 -16.36176 -16.07127 -15.86409 -15.81715 -15.73849 -15.23715 -15.13844 -14.61747 -14.37907 -13.86288 -13.60400 -13.54386 -13.27159 -13.14149 -12.94006 -12.82731 -12.61486 -12.48184 -12.12637 -12.12273 -12.06610 -11.82878 -11.59735 -11.56113 -10.50249 -10.11516 -9.97998 -9.22087 -8.51723 -6.02526 0.06591 0.09393 1.16499 1.38474 1.40561 1.48521 1.58318 1.88192 2.16671 2.29748 2.51997 3.11293 3.13820 3.15595 3.49243 3.67888 3.78934 3.95620 4.14030 4.16528 4.17791 4.23510 4.34949 4.38110 4.38199 4.46684 4.63825 4.71951 4.83528 5.00040 5.09373 5.36152 5.38415 5.39458 5.60144 5.89641 6.24802 6.46577 6.69625 7.03327 7.40667 7.93916 8.64995 Molecular weight = 311.10amu Principal moments of inertia in cm(-1) A = 0.036252 B = 0.002104 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.185923 B =13305.591731 C =13360.855072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.335 6.335 3 C 0.089 3.911 4 C -0.178 4.178 5 C -0.069 4.069 6 C -0.093 4.093 7 C -0.061 4.061 8 C 0.458 3.542 9 O -0.531 6.531 10 O -0.343 6.343 11 C 0.072 3.928 12 C 0.436 3.564 13 O -0.617 6.617 14 N -0.559 5.559 15 C -0.338 4.338 16 H 0.085 0.915 17 C -0.010 4.010 18 N -0.916 5.916 19 Si 0.999 3.001 20 H -0.270 1.270 21 H -0.271 1.271 22 H -0.269 1.269 23 C -0.103 4.103 24 C 0.036 3.964 25 F -0.148 7.148 26 H 0.068 0.932 27 H 0.119 0.881 28 H 0.075 0.925 29 H 0.168 0.832 30 H 0.160 0.840 31 H 0.140 0.860 32 H 0.150 0.850 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.399 0.601 36 H 0.281 0.719 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.230 -17.005 13.240 25.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.249 6.249 3 C 0.042 3.958 4 C -0.196 4.196 5 C -0.086 4.086 6 C -0.093 4.093 7 C -0.098 4.098 8 C 0.303 3.697 9 O -0.421 6.421 10 O -0.258 6.258 11 C -0.005 4.005 12 C 0.223 3.777 13 O -0.504 6.504 14 N -0.197 5.197 15 C -0.467 4.467 16 H 0.103 0.897 17 C -0.211 4.211 18 N -0.556 5.556 19 Si 0.821 3.179 20 H -0.195 1.195 21 H -0.195 1.195 22 H -0.194 1.194 23 C -0.122 4.122 24 C 0.017 3.983 25 F -0.127 7.127 26 H 0.086 0.914 27 H 0.137 0.863 28 H 0.093 0.907 29 H 0.186 0.814 30 H 0.177 0.823 31 H 0.158 0.842 32 H 0.168 0.832 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.234 0.766 36 H 0.090 0.910 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -13.008 -17.006 13.399 25.258 hybrid contribution 0.370 0.165 -1.019 1.097 sum -12.639 -16.841 12.380 24.426 Atomic orbital electron populations 1.23454 0.75566 1.05962 1.02857 1.86106 1.24265 1.25967 1.88578 1.19238 0.90705 0.86603 0.99214 1.21413 1.01703 0.90416 1.06061 1.21279 0.93489 0.98690 0.95189 1.19143 0.93984 0.92927 1.03276 1.20382 1.05974 0.94825 0.88592 1.24479 0.73232 0.77935 0.94081 1.90679 1.48565 1.54937 1.47880 1.86556 1.72106 1.37937 1.29232 1.22468 1.02576 0.94673 0.80795 1.20139 0.85148 0.88356 0.84032 1.90521 1.58812 1.65414 1.35633 1.41761 1.52576 1.18752 1.06577 1.19693 1.36763 0.96012 0.94249 0.89658 1.26145 0.97651 1.03416 0.93881 1.69666 1.46976 1.40559 0.98405 0.84905 0.78544 0.76752 0.77654 1.19487 1.19505 1.19396 1.21047 1.01734 0.89694 0.99727 1.17221 0.86761 0.82919 1.11434 1.91451 1.76838 1.49711 1.94671 0.91369 0.86286 0.90669 0.81420 0.82286 0.84174 0.83231 0.87951 0.87648 0.76615 0.90987 0.83129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.26 16 2 O -0.34 -6.69 10.36 -92.99 -0.96 -7.65 16 3 C 0.09 1.85 6.69 22.53 0.15 2.00 16 4 C -0.18 -2.74 9.04 22.36 0.20 -2.54 16 5 C -0.07 -1.07 9.69 22.26 0.22 -0.85 16 6 C -0.09 -1.71 4.37 -19.86 -0.09 -1.80 16 7 C -0.06 -1.04 5.94 29.10 0.17 -0.87 16 8 C 0.46 12.59 7.95 71.23 0.57 13.16 16 9 O -0.53 -17.20 15.78 21.94 0.35 -16.85 16 10 O -0.34 -11.77 9.75 -45.06 -0.44 -12.21 16 11 C 0.07 2.64 5.94 71.24 0.42 3.07 16 12 C 0.44 20.99 7.86 87.66 0.69 21.68 16 13 O -0.62 -34.47 16.08 15.75 0.25 -34.22 16 14 N -0.56 -28.47 5.29 -306.99 -1.62 -30.09 16 15 C -0.34 -18.84 9.68 84.04 0.81 -18.02 16 16 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 17 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 18 N -0.92 -48.53 13.05 21.66 0.28 -48.24 16 19 Si 1.00 41.73 29.55 68.60 2.03 43.76 16 20 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 21 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 22 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 23 C -0.10 -2.16 9.67 22.30 0.22 -1.94 16 24 C 0.04 0.87 7.31 22.45 0.16 1.03 16 25 F -0.15 -4.00 17.11 44.97 0.77 -3.23 16 26 H 0.07 0.51 7.66 -2.39 -0.02 0.49 16 27 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 0.44 7.66 -2.39 -0.02 0.42 16 29 H 0.17 1.49 6.30 -2.91 -0.02 1.47 16 30 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 31 H 0.14 1.83 8.08 -2.38 -0.02 1.82 16 32 H 0.15 1.70 8.08 -2.39 -0.02 1.68 16 33 H 0.10 3.42 8.13 -2.39 -0.02 3.40 16 34 H 0.11 3.46 8.13 -2.38 -0.02 3.44 16 35 H 0.40 19.22 7.90 -92.71 -0.73 18.48 16 36 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 37 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -75.19 339.45 6.16 -69.04 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 0.40 Total: 23.60 kcal Atomic # 6 Polarization: 11.00 SS G_CDS: 5.11 Total: 16.11 kcal Atomic # 7 Polarization: -77.00 SS G_CDS: -1.34 Total: -78.34 kcal Atomic # 8 Polarization: -70.13 SS G_CDS: -0.80 Total: -70.93 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.77 Total: -3.23 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -75.19 6.16 -69.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731236885.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.632 kcal (2) G-P(sol) polarization free energy of solvation -75.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds