Wall clock time and date at job start Fri Apr 10 2020 14:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35957 * 117.00234 * 2 1 4 4 C 1.38665 * 120.05770 * 0.02562 * 3 2 1 5 5 C 1.38181 * 119.96394 * 179.70532 * 4 3 2 6 6 C 1.38257 * 120.09697 * 0.54622 * 5 4 3 7 7 C 1.50698 * 119.93840 * 179.72291 * 6 5 4 8 8 C 1.50701 * 109.47588 * 269.72874 * 7 6 5 9 9 O 1.21294 * 119.99576 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00156 * 179.72289 * 8 7 6 11 11 C 1.37107 * 119.99776 * 180.27897 * 10 8 7 12 12 H 1.08000 * 120.00213 * 11.50629 * 11 10 8 13 13 C 1.38946 * 119.99528 * 191.51074 * 11 10 8 14 14 N 1.31415 * 120.00503 * 21.39462 * 13 11 10 15 15 Si 1.86795 * 119.99682 * 201.39309 * 13 11 10 16 16 H 1.48504 * 109.47233 * 84.98784 * 15 13 11 17 17 H 1.48501 * 109.47427 * 204.98847 * 15 13 11 18 18 H 1.48507 * 109.47362 * 324.98827 * 15 13 11 19 19 C 1.46499 * 120.00061 * 0.27565 * 10 8 7 20 20 C 1.50701 * 109.46725 * 84.66951 * 19 10 8 21 21 O 1.20822 * 120.00072 * 359.97438 * 20 19 10 22 22 O 1.34232 * 119.99861 * 180.02562 * 20 19 10 23 23 C 1.38253 * 120.12463 * 359.45407 * 6 5 4 24 24 C 1.38333 * 120.02999 * 0.27110 * 23 6 5 25 25 F 1.35104 * 120.04406 * 179.97438 * 24 23 6 26 26 H 1.08996 * 109.47390 * 299.99904 * 1 2 3 27 27 H 1.09000 * 109.46853 * 60.00471 * 1 2 3 28 28 H 1.09003 * 109.47189 * 179.97438 * 1 2 3 29 29 H 1.07992 * 120.01678 * 359.97438 * 4 3 2 30 30 H 1.08001 * 119.94863 * 180.29389 * 5 4 3 31 31 H 1.09004 * 109.47181 * 149.72996 * 7 6 5 32 32 H 1.08998 * 109.46928 * 29.73008 * 7 6 5 33 33 H 0.96994 * 120.00364 * 179.97438 * 14 13 11 34 34 H 1.08994 * 109.46904 * 204.66407 * 19 10 8 35 35 H 1.08999 * 109.46924 * 324.66928 * 19 10 8 36 36 H 0.96700 * 117.00378 * 179.97438 * 22 20 19 37 37 H 1.08006 * 119.98906 * 180.24844 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2923 2.3751 0.0005 5 6 1.9217 3.6052 0.0067 6 6 3.3023 3.6777 0.0009 7 6 3.9850 5.0211 0.0013 8 6 4.2124 5.4696 -1.4193 9 8 3.8549 4.7675 -2.3415 10 7 4.8076 6.6536 -1.6651 11 6 5.0094 7.0641 -2.9576 12 1 4.5327 6.5385 -3.7718 13 6 5.8272 8.1563 -3.2199 14 7 6.7221 8.5348 -2.3351 15 14 5.6546 9.0869 -4.8304 16 1 4.5792 10.1029 -4.7022 17 1 6.9376 9.7620 -5.1520 18 1 5.3098 8.1355 -5.9173 19 6 5.2389 7.5018 -0.5513 20 6 6.6055 7.0667 -0.0885 21 8 7.1618 6.1425 -0.6328 22 8 7.2043 7.7052 0.9292 23 6 4.0579 2.5198 0.0004 24 6 3.4333 1.2856 -0.0001 25 9 4.1713 0.1540 -0.0012 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 0.2138 2.3200 0.0005 30 1 1.3341 4.5114 0.0119 31 1 4.9431 4.9417 0.5151 32 1 3.3562 5.7480 0.5155 33 1 7.2932 9.2970 -2.5183 34 1 5.2803 8.5401 -0.8803 35 1 4.5301 7.4093 0.2715 36 1 8.0802 7.3899 1.1907 37 1 5.1363 2.5790 -0.0001 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737981798.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:33:17 Heat of formation + Delta-G solvation = -165.161008 kcal Electronic energy + Delta-G solvation = -25830.435287 eV Core-core repulsion = 21681.685765 eV Total energy + Delta-G solvation = -4148.749523 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.105 amu Computer time = 2.72 seconds Orbital eigenvalues (eV) -48.56270 -40.04262 -39.47811 -38.40579 -37.25838 -35.28837 -34.56593 -32.15179 -31.45246 -30.57433 -28.24823 -27.71225 -26.56121 -24.47776 -22.63898 -21.67100 -21.12176 -19.06828 -18.19548 -17.25596 -16.98204 -16.80501 -16.56332 -16.31303 -16.03648 -15.66127 -14.94938 -14.74886 -14.65342 -14.51126 -14.31223 -14.18765 -13.89462 -13.56312 -12.78757 -12.65330 -12.22202 -12.15678 -12.03118 -11.73911 -11.68583 -11.44268 -11.25386 -11.03210 -10.95854 -10.90530 -10.49242 -10.42837 -10.30931 -9.73755 -9.08136 -8.77132 -8.60506 -8.00744 -7.92943 -6.49632 -3.92116 1.31959 1.39972 3.11270 3.14144 3.22080 3.26822 3.36241 3.58119 3.69604 4.03522 4.19465 4.36669 4.70528 4.76019 4.90212 4.97285 5.01723 5.06398 5.23635 5.32479 5.42031 5.57158 5.66942 5.68468 5.84868 5.91814 6.04628 6.23549 6.29292 6.40547 6.61266 6.72517 6.77231 7.33129 7.42156 7.50303 7.90939 8.31587 8.94308 9.03977 9.25247 9.78056 10.58176 Molecular weight = 311.10amu Principal moments of inertia in cm(-1) A = 0.019221 B = 0.003779 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.356292 B = 7406.840336 C = 8117.733672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.083 3.917 4 C -0.180 4.180 5 C -0.077 4.077 6 C -0.050 4.050 7 C -0.099 4.099 8 C 0.462 3.538 9 O -0.567 6.567 10 N -0.433 5.433 11 C -0.301 4.301 12 H 0.110 0.890 13 C 0.027 3.973 14 N -0.886 5.886 15 Si 0.931 3.069 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.270 1.270 19 C 0.140 3.860 20 C 0.488 3.512 21 O -0.508 6.508 22 O -0.533 6.533 23 C -0.101 4.101 24 C 0.070 3.930 25 F -0.137 7.137 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.098 0.902 29 H 0.135 0.865 30 H 0.131 0.869 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.272 0.728 34 H 0.139 0.861 35 H 0.077 0.923 36 H 0.392 0.608 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.080 -5.140 10.067 14.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.038 3.962 4 C -0.199 4.199 5 C -0.095 4.095 6 C -0.051 4.051 7 C -0.139 4.139 8 C 0.250 3.750 9 O -0.449 6.449 10 N -0.153 5.153 11 C -0.428 4.428 12 H 0.128 0.872 13 C -0.175 4.175 14 N -0.527 5.527 15 Si 0.757 3.243 16 H -0.202 1.202 17 H -0.211 1.211 18 H -0.194 1.194 19 C 0.013 3.987 20 C 0.329 3.671 21 O -0.394 6.394 22 O -0.344 6.344 23 C -0.120 4.120 24 C 0.050 3.950 25 F -0.115 7.115 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.117 0.883 29 H 0.153 0.847 30 H 0.149 0.851 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.082 0.918 34 H 0.157 0.843 35 H 0.095 0.905 36 H 0.249 0.751 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.251 -5.709 9.300 14.306 hybrid contribution 0.861 0.365 -0.605 1.114 sum -8.390 -5.343 8.695 13.212 Atomic orbital electron populations 1.23057 0.78386 1.03834 1.01442 1.86103 1.21369 1.26123 1.89182 1.18902 0.90702 0.85411 1.01225 1.21003 0.99868 0.91408 1.07575 1.20833 0.93818 0.97217 0.97613 1.19133 0.93124 0.93838 0.98997 1.20672 1.01434 0.94031 0.97772 1.19818 0.84154 0.81400 0.89608 1.90564 1.55117 1.53321 1.45940 1.43502 1.50766 1.15410 1.05619 1.19779 1.27621 1.11732 0.83622 0.87247 1.25203 0.94125 0.98427 0.99699 1.69814 1.18568 1.27403 1.36939 0.85859 0.77492 0.79463 0.81447 1.20192 1.21095 1.19439 1.20909 0.88015 1.00276 0.89510 1.23973 0.89297 0.78849 0.74981 1.90626 1.65343 1.29843 1.53594 1.84532 1.36295 1.62358 1.51186 1.20884 1.01116 0.89731 1.00224 1.16858 0.85842 0.82785 1.09526 1.91470 1.76540 1.49097 1.94428 0.92624 0.92490 0.88312 0.84748 0.85124 0.89269 0.88925 0.91796 0.84309 0.90547 0.75132 0.84178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.40 10.36 -19.60 -0.20 -4.60 16 3 C 0.08 1.28 6.69 -39.18 -0.26 1.01 16 4 C -0.18 -2.42 9.04 -39.44 -0.36 -2.78 16 5 C -0.08 -1.12 9.69 -39.60 -0.38 -1.50 16 6 C -0.05 -0.85 4.37 -104.61 -0.46 -1.30 16 7 C -0.10 -1.73 4.44 -29.04 -0.13 -1.86 16 8 C 0.46 10.76 7.44 -10.99 -0.08 10.68 16 9 O -0.57 -15.29 15.64 5.54 0.09 -15.20 16 10 N -0.43 -10.49 2.17 -116.10 -0.25 -10.75 16 11 C -0.30 -8.06 9.42 -14.93 -0.14 -8.21 16 12 H 0.11 3.11 7.31 -52.49 -0.38 2.73 16 13 C 0.03 0.69 4.95 -17.47 -0.09 0.60 16 14 N -0.89 -22.54 9.27 55.50 0.51 -22.03 16 15 Si 0.93 20.17 29.60 -169.99 -5.03 15.14 16 16 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 17 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 19 C 0.14 2.88 4.98 -5.19 -0.03 2.85 16 20 C 0.49 10.35 6.07 36.01 0.22 10.57 16 21 O -0.51 -12.79 17.03 -18.75 -0.32 -13.11 16 22 O -0.53 -9.09 13.42 -39.26 -0.53 -9.61 16 23 C -0.10 -1.74 9.67 -39.54 -0.38 -2.13 16 24 C 0.07 1.19 7.31 -39.30 -0.29 0.90 16 25 F -0.14 -2.40 17.11 2.25 0.04 -2.36 16 26 H 0.06 0.40 7.66 -51.93 -0.40 0.01 16 27 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 28 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.13 1.36 6.30 -52.49 -0.33 1.03 16 30 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 31 H 0.09 1.52 7.52 -51.93 -0.39 1.13 16 32 H 0.09 1.29 7.35 -51.93 -0.38 0.91 16 33 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 34 H 0.14 3.02 6.01 -51.93 -0.31 2.71 16 35 H 0.08 1.23 6.65 -51.93 -0.35 0.88 16 36 H 0.39 5.09 9.10 45.56 0.41 5.50 16 37 H 0.14 2.38 8.06 -52.48 -0.42 1.96 16 LS Contribution 327.96 15.07 4.94 4.94 Total: -1.00 -34.53 327.96 -5.06 -39.59 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -2.93 Total: 7.90 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: -1.38 Total: 10.09 kcal Atomic # 7 Polarization: -33.03 SS G_CDS: 0.26 Total: -32.77 kcal Atomic # 8 Polarization: -41.56 SS G_CDS: -0.96 Total: -42.53 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.04 Total: -2.36 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.03 Total: 15.14 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.53 -5.06 -39.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737981798.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.567 kcal (2) G-P(sol) polarization free energy of solvation -34.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.73 seconds