Wall clock time and date at job start Fri Apr 10 2020 14:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.38500 * 125.83497 * 2 1 4 4 C 1.40122 * 125.92720 * 359.97438 * 3 2 1 5 5 H 1.08001 * 119.99639 * 0.02562 * 4 3 2 6 6 C 1.40030 * 119.99805 * 180.02562 * 4 3 2 7 7 N 1.30793 * 120.00321 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99720 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47487 * 0.02562 * 8 6 4 10 10 H 1.48493 * 109.47136 * 120.00351 * 8 6 4 11 11 H 1.48507 * 109.47094 * 240.00007 * 8 6 4 12 12 N 1.32238 * 108.14512 * 179.97438 * 3 2 1 13 13 N 1.40162 * 107.76101 * 359.74316 * 12 3 2 14 14 C 1.46504 * 126.14912 * 180.26085 * 13 12 3 15 15 N 1.46894 * 109.47116 * 270.18748 * 14 13 12 16 16 C 1.47851 * 111.00073 * 290.83813 * 15 14 13 17 17 C 1.54901 * 104.79826 * 213.64062 * 16 15 14 18 18 C 1.55134 * 101.65373 * 37.06764 * 17 16 15 19 19 F 1.39903 * 110.70458 * 82.73203 * 18 17 16 20 20 C 1.47200 * 110.70837 * 205.96394 * 18 17 16 21 21 N 8.88861 * 140.24694 * 220.69277 * 2 1 3 22 22 C 1.47441 * 110.99934 * 169.99921 * 15 14 13 23 23 C 1.34726 * 125.83129 * 179.97438 * 2 1 3 24 24 S 1.71198 * 125.97671 * 0.02940 * 23 2 1 25 25 H 1.09000 * 109.47370 * 270.00509 * 1 2 3 26 26 H 1.08995 * 109.47190 * 30.00490 * 1 2 3 27 27 H 1.09000 * 109.47025 * 150.00100 * 1 2 3 28 28 H 0.97001 * 120.00289 * 179.97438 * 7 6 4 29 29 H 1.08996 * 109.46877 * 30.18241 * 14 13 12 30 30 H 1.08997 * 109.46977 * 150.18093 * 14 13 12 31 31 H 1.09000 * 110.37268 * 332.47031 * 16 15 14 32 32 H 1.09005 * 110.37105 * 94.80451 * 16 15 14 33 33 H 1.09004 * 110.98794 * 278.97444 * 17 16 15 34 34 H 1.09005 * 111.02345 * 155.18039 * 17 16 15 35 35 H 1.08998 * 109.89070 * 242.65718 * 22 15 14 36 36 H 1.09000 * 109.89080 * 3.68456 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2759 1.1228 0.0000 4 6 1.8373 2.4537 -0.0005 5 1 0.7800 2.6737 -0.0005 6 6 2.7700 3.4981 -0.0010 7 7 4.0505 3.2315 -0.0015 8 14 2.1854 5.2723 -0.0009 9 1 0.7008 5.3043 0.0003 10 1 2.6959 5.9617 1.2112 11 1 2.6949 5.9614 -1.2138 12 7 3.5357 0.7210 0.0006 13 7 3.5375 -0.6806 0.0069 14 6 4.7215 -1.5433 0.0150 15 7 5.1249 -1.8342 -1.3672 16 6 4.1374 -2.7095 -2.0342 17 6 4.9752 -3.5935 -2.9914 18 6 6.2580 -3.8347 -2.1530 19 9 6.0676 -4.8852 -1.2488 20 6 7.4098 -4.1029 -3.0294 21 7 8.2987 -4.3098 -3.7060 22 6 6.4411 -2.4974 -1.4050 23 6 2.2537 -1.0923 0.0005 24 16 1.7192 -2.7187 0.0005 25 1 -0.3634 0.0001 1.0276 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 4.6966 3.9551 -0.0022 29 1 5.5364 -1.0369 0.5323 30 1 4.4883 -2.4755 0.5294 31 1 3.6218 -3.3284 -1.2999 32 1 3.4210 -2.1123 -2.5984 33 1 5.2060 -3.0602 -3.9137 34 1 4.4647 -4.5330 -3.2034 35 1 7.1571 -1.8705 -1.9364 36 1 6.7924 -2.6826 -0.3899 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794644767.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:31:16 Heat of formation + Delta-G solvation = 63.480339 kcal Electronic energy + Delta-G solvation = -23531.133709 eV Core-core repulsion = 19899.637192 eV Total energy + Delta-G solvation = -3631.496517 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.091 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.18640 -42.61216 -39.96203 -37.78828 -36.17708 -35.60670 -33.26521 -31.90252 -30.38361 -29.11042 -28.24568 -26.21271 -23.81120 -23.45972 -22.65169 -22.20801 -19.87871 -19.49571 -18.53154 -17.74797 -17.41732 -17.13695 -16.68848 -16.45248 -16.32036 -15.93179 -15.55338 -15.07732 -15.04982 -14.69205 -14.50791 -14.12785 -13.93020 -13.79573 -13.59353 -13.41797 -13.27777 -13.13285 -12.91293 -12.73485 -12.52715 -12.40525 -12.36612 -12.04543 -11.91954 -11.72621 -11.33415 -10.88965 -10.63563 -9.68244 -8.73551 -8.59602 -8.38242 -6.92561 0.55075 0.82051 1.24419 1.27753 1.30549 1.48049 1.64185 1.66207 1.89011 2.09848 2.16584 2.44700 2.78429 2.97422 3.06533 3.13539 3.54122 3.69326 3.94948 4.08648 4.15638 4.21825 4.44082 4.49605 4.56940 4.66782 4.72202 4.75290 4.89966 4.93046 5.06636 5.13789 5.30494 5.60070 5.65142 5.91873 6.04270 6.09588 6.51801 6.61246 7.37284 8.28190 Molecular weight = 311.09amu Principal moments of inertia in cm(-1) A = 0.017517 B = 0.004240 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.020784 B = 6602.343098 C = 7785.598449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.516 5.516 3 C 0.352 3.648 4 C -0.453 4.453 5 H 0.118 0.882 6 C 0.037 3.963 7 N -0.774 5.774 8 Si 1.003 2.997 9 H -0.245 1.245 10 H -0.269 1.269 11 H -0.270 1.270 12 N -0.363 5.363 13 N -0.370 5.370 14 C 0.313 3.687 15 N -0.545 5.545 16 C 0.036 3.964 17 C -0.125 4.125 18 C 0.213 3.787 19 F -0.175 7.175 20 C 0.220 3.780 21 N -0.421 5.421 22 C 0.044 3.956 23 C 0.454 3.546 24 S -0.724 6.724 25 H 0.081 0.919 26 H 0.104 0.896 27 H 0.091 0.909 28 H 0.291 0.709 29 H 0.117 0.883 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.059 0.941 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.650 -2.266 -1.912 3.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.216 5.216 3 C 0.104 3.896 4 C -0.494 4.494 5 H 0.135 0.865 6 C -0.186 4.186 7 N -0.399 5.399 8 Si 0.823 3.177 9 H -0.167 1.167 10 H -0.194 1.194 11 H -0.195 1.195 12 N -0.195 5.195 13 N -0.156 5.156 14 C 0.102 3.898 15 N -0.271 5.271 16 C -0.092 4.092 17 C -0.165 4.165 18 C 0.190 3.810 19 F -0.155 7.155 20 C -0.100 4.100 21 N -0.096 5.096 22 C -0.085 4.085 23 C 0.083 3.917 24 S -0.600 6.600 25 H 0.099 0.901 26 H 0.123 0.877 27 H 0.110 0.890 28 H 0.102 0.898 29 H 0.135 0.865 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.128 0.872 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.985 -2.751 -3.127 5.124 hybrid contribution -0.913 0.465 0.752 1.272 sum 2.072 -2.285 -2.375 3.893 Atomic orbital electron populations 1.22037 0.73121 1.05268 1.04273 1.46258 1.09676 1.04186 1.61511 1.21690 0.84415 0.89432 0.94109 1.18926 0.96779 0.85470 1.48225 0.86464 1.26825 0.94078 1.06041 0.91694 1.69965 1.03033 1.36906 1.29976 0.84808 0.80304 0.74034 0.78600 1.16740 1.19393 1.19491 1.79353 1.14841 0.83370 1.41935 1.49400 1.03840 1.06878 1.55449 1.22197 0.84632 0.92331 0.90631 1.63553 1.03064 1.44640 1.15830 1.23508 0.94111 0.93941 0.97639 1.23369 0.91633 1.02828 0.98639 1.19097 0.89474 0.86239 0.86140 1.93010 1.95634 1.59113 1.67782 1.28839 0.93675 0.93547 0.93978 1.81235 1.11082 1.07127 1.10131 1.23376 0.91908 0.90279 1.02977 1.23015 0.85432 0.92602 0.90604 1.92636 1.85262 0.99167 1.82910 0.90073 0.87713 0.89032 0.89798 0.86537 0.89815 0.89353 0.92291 0.87199 0.86534 0.86421 0.87624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.06 10.65 127.77 1.36 4.42 16 2 N -0.52 -21.95 3.17 -548.30 -1.74 -23.69 16 3 C 0.35 16.59 7.50 133.52 1.00 17.59 16 4 C -0.45 -19.93 8.98 23.16 0.21 -19.72 16 5 H 0.12 4.50 7.11 -2.91 -0.02 4.48 16 6 C 0.04 1.57 5.50 85.28 0.47 2.04 16 7 N -0.77 -36.28 11.90 21.84 0.26 -36.02 16 8 Si 1.00 31.64 29.56 68.60 2.03 33.67 16 9 H -0.24 -7.11 7.11 99.48 0.71 -6.40 16 10 H -0.27 -8.39 7.11 99.48 0.71 -7.68 16 11 H -0.27 -8.47 7.11 99.48 0.71 -7.76 16 12 N -0.36 -17.86 10.77 -55.17 -0.59 -18.46 16 13 N -0.37 -16.07 3.68 -359.73 -1.33 -17.39 16 14 C 0.31 10.82 5.60 170.81 0.96 11.78 16 15 N -0.54 -16.62 5.31 -897.88 -4.77 -21.39 16 16 C 0.04 1.09 5.49 86.77 0.48 1.56 16 17 C -0.13 -2.72 6.29 31.98 0.20 -2.52 16 18 C 0.21 4.53 1.49 -11.42 -0.02 4.51 16 19 F -0.18 -4.11 16.94 44.97 0.76 -3.35 16 20 C 0.22 4.93 14.31 89.44 1.28 6.21 16 21 N -0.42 -11.08 18.54 20.01 0.37 -10.71 16 22 C 0.04 0.96 6.25 86.65 0.54 1.51 16 23 C 0.45 20.06 7.37 179.06 1.32 21.38 16 24 S -0.72 -31.95 26.58 -56.49 -1.50 -33.46 16 25 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 26 H 0.10 2.92 7.32 -2.39 -0.02 2.91 16 27 H 0.09 2.94 7.61 -2.39 -0.02 2.92 16 28 H 0.29 12.33 8.30 -92.71 -0.77 11.56 16 29 H 0.12 3.72 8.03 -2.39 -0.02 3.70 16 30 H 0.08 2.83 7.35 -2.39 -0.02 2.82 16 31 H 0.09 3.07 5.10 -2.55 -0.01 3.06 16 32 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 33 H 0.11 2.13 8.03 -2.38 -0.02 2.11 16 34 H 0.12 2.20 8.14 -2.38 -0.02 2.18 16 35 H 0.12 2.33 7.80 -2.39 -0.02 2.32 16 36 H 0.11 1.95 7.52 -2.39 -0.02 1.93 16 Total: -1.00 -61.85 325.79 2.42 -59.43 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: 1.13 Total: 22.59 kcal Atomic # 6 Polarization: 40.97 SS G_CDS: 7.80 Total: 48.76 kcal Atomic # 7 Polarization: -119.86 SS G_CDS: -7.80 Total: -127.66 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.76 Total: -3.35 kcal Atomic # 14 Polarization: 31.64 SS G_CDS: 2.03 Total: 33.67 kcal Atomic # 16 Polarization: -31.95 SS G_CDS: -1.50 Total: -33.46 kcal Total: -61.85 2.42 -59.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794644767.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.914 kcal (2) G-P(sol) polarization free energy of solvation -61.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds