Wall clock time and date at job start Fri Apr 10 2020 14:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.38501 * 125.83812 * 2 1 4 4 C 1.40122 * 125.92531 * 0.02562 * 3 2 1 5 5 H 1.07998 * 119.99938 * 359.97438 * 4 3 2 6 6 C 1.40040 * 119.99946 * 180.02562 * 4 3 2 7 7 N 1.30793 * 119.99888 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99833 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.46839 * 59.99814 * 8 6 4 10 10 H 1.48492 * 109.46903 * 179.97438 * 8 6 4 11 11 H 1.48491 * 109.47134 * 299.99751 * 8 6 4 12 12 N 1.32238 * 108.14515 * 179.72107 * 3 2 1 13 13 N 1.40156 * 107.76204 * 0.43627 * 12 3 2 14 14 C 1.46500 * 126.14713 * 179.82083 * 13 12 3 15 15 N 1.46904 * 109.47393 * 269.69173 * 14 13 12 16 16 C 1.47843 * 110.99640 * 69.15440 * 15 14 13 17 17 C 1.54916 * 104.79337 * 146.36598 * 16 15 14 18 18 C 1.55398 * 101.74107 * 323.02060 * 17 16 15 19 19 F 1.39904 * 110.67765 * 277.17931 * 18 17 16 20 20 C 1.47201 * 110.84880 * 153.86280 * 18 17 16 21 21 N 8.90679 * 141.47514 * 222.48561 * 2 1 3 22 22 C 1.47439 * 111.00045 * 190.00149 * 15 14 13 23 23 C 1.34728 * 125.83305 * 180.02562 * 2 1 3 24 24 S 1.71199 * 125.97362 * 0.03545 * 23 2 1 25 25 H 1.08992 * 109.47215 * 269.97303 * 1 2 3 26 26 H 1.09002 * 109.46868 * 29.97521 * 1 2 3 27 27 H 1.08994 * 109.47201 * 149.96868 * 1 2 3 28 28 H 0.97000 * 120.00101 * 180.02562 * 7 6 4 29 29 H 1.09006 * 109.47111 * 149.69348 * 14 13 12 30 30 H 1.08995 * 109.47278 * 29.69123 * 14 13 12 31 31 H 1.08996 * 110.37823 * 265.19398 * 16 15 14 32 32 H 1.09001 * 110.37314 * 27.42672 * 16 15 14 33 33 H 1.08995 * 110.98807 * 81.01940 * 17 16 15 34 34 H 1.08997 * 110.99078 * 204.83973 * 17 16 15 35 35 H 1.09002 * 109.88998 * 356.14887 * 22 15 14 36 36 H 1.09003 * 109.88733 * 117.17548 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2759 1.1228 0.0000 4 6 1.8374 2.4536 0.0005 5 1 0.7801 2.6738 0.0005 6 6 2.7702 3.4982 -0.0001 7 7 4.0506 3.2315 -0.0006 8 14 2.1856 5.2724 -0.0001 9 1 1.3663 5.5236 1.2127 10 1 3.3603 6.1806 -0.0002 11 1 1.3653 5.5232 -1.2123 12 7 3.5357 0.7209 0.0061 13 7 3.5375 -0.6806 0.0000 14 6 4.7215 -1.5433 -0.0001 15 7 5.1173 -1.8317 -1.3852 16 6 5.6453 -0.6204 -2.0483 17 6 6.7402 -1.1424 -3.0120 18 6 7.3670 -2.2974 -2.1825 19 9 8.3138 -1.8002 -1.2803 20 6 7.9688 -3.3098 -3.0654 21 7 8.4331 -4.0911 -3.7469 22 6 6.1518 -2.8812 -1.4315 23 6 2.2537 -1.0923 -0.0005 24 16 1.7192 -2.7187 -0.0021 25 1 -0.3633 -0.0005 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8897 -0.5143 28 1 4.6967 3.9550 -0.0007 29 1 4.4911 -2.4767 0.5137 30 1 5.5393 -1.0380 0.5137 31 1 4.8555 -0.1189 -2.6074 32 1 6.0773 0.0575 -1.3121 33 1 6.3000 -1.5213 -3.9343 34 1 7.4771 -0.3673 -3.2223 35 1 6.4414 -3.1614 -0.4187 36 1 5.7715 -3.7535 -1.9631 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794644768.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:31:19 Heat of formation + Delta-G solvation = 78.028717 kcal Electronic energy + Delta-G solvation = -23540.901549 eV Core-core repulsion = 19910.035897 eV Total energy + Delta-G solvation = -3630.865651 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 311.091 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.25807 -40.92010 -38.83174 -36.71325 -34.65953 -33.99561 -31.91849 -30.35708 -29.39000 -27.64319 -26.62035 -24.76094 -22.68599 -22.06848 -21.11403 -20.81269 -18.92108 -17.86981 -17.07222 -16.48196 -15.84378 -15.72046 -15.49754 -15.09502 -14.76312 -14.67078 -14.39296 -14.11757 -13.69607 -13.44358 -13.39225 -13.05479 -12.79803 -12.47553 -12.33795 -12.11369 -11.90827 -11.86934 -11.55260 -11.50659 -11.33285 -11.16002 -11.00245 -10.69030 -10.55235 -10.12435 -9.60794 -9.31415 -8.94569 -8.38249 -7.11793 -6.79205 -6.69522 -5.20965 2.18912 2.24848 2.28907 2.54618 2.74951 2.87061 2.88792 3.05887 3.34802 3.46826 3.59881 3.86586 3.92206 3.97564 4.17132 4.54828 4.78334 4.91342 5.03566 5.14462 5.39046 5.49365 5.50570 5.57813 5.63981 5.82879 5.93329 6.05314 6.10702 6.20618 6.49521 6.73344 6.79230 6.86197 6.95831 7.01273 7.50745 7.70364 8.17506 8.29022 9.08516 9.85707 Molecular weight = 311.09amu Principal moments of inertia in cm(-1) A = 0.013929 B = 0.004715 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.655662 B = 5937.610456 C = 7554.272717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.517 5.517 3 C 0.377 3.623 4 C -0.437 4.437 5 H 0.097 0.903 6 C 0.078 3.922 7 N -0.738 5.738 8 Si 0.927 3.073 9 H -0.262 1.262 10 H -0.274 1.274 11 H -0.262 1.262 12 N -0.344 5.344 13 N -0.380 5.380 14 C 0.321 3.679 15 N -0.530 5.530 16 C 0.052 3.948 17 C -0.136 4.136 18 C 0.200 3.800 19 F -0.174 7.174 20 C 0.197 3.803 21 N -0.392 5.392 22 C 0.046 3.954 23 C 0.481 3.519 24 S -0.705 6.705 25 H 0.066 0.934 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.286 0.714 29 H 0.114 0.886 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.721 0.690 -1.974 4.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.218 5.218 3 C 0.128 3.872 4 C -0.478 4.478 5 H 0.115 0.885 6 C -0.149 4.149 7 N -0.362 5.362 8 Si 0.751 3.249 9 H -0.186 1.186 10 H -0.199 1.199 11 H -0.186 1.186 12 N -0.176 5.176 13 N -0.166 5.166 14 C 0.109 3.891 15 N -0.256 5.256 16 C -0.075 4.075 17 C -0.175 4.175 18 C 0.177 3.823 19 F -0.154 7.154 20 C -0.123 4.123 21 N -0.067 5.067 22 C -0.085 4.085 23 C 0.113 3.887 24 S -0.581 6.581 25 H 0.085 0.915 26 H 0.102 0.898 27 H 0.108 0.892 28 H 0.097 0.903 29 H 0.132 0.868 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.091 0.909 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.105 0.895 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.987 -1.251 -3.200 6.056 hybrid contribution -0.068 2.046 0.732 2.174 sum 4.919 0.795 -2.468 5.560 Atomic orbital electron populations 1.21757 0.75380 1.04186 1.02975 1.45976 1.08257 1.05017 1.62530 1.21247 0.84089 0.88458 0.93441 1.18335 0.95442 0.85620 1.48442 0.88529 1.25809 0.94305 1.01910 0.92831 1.69844 1.01585 1.35389 1.29385 0.86026 0.79307 0.79442 0.80166 1.18635 1.19898 1.18622 1.79346 1.14040 0.82123 1.42081 1.49010 1.03208 1.07058 1.57287 1.21952 0.84492 0.93694 0.88947 1.63573 1.36507 1.08121 1.17350 1.23098 0.96095 0.91714 0.96588 1.23461 0.98952 0.95786 0.99340 1.19314 0.86080 0.90483 0.86397 1.92998 1.66425 1.88134 1.67830 1.28890 0.94421 0.94326 0.94687 1.81201 1.06582 1.09695 1.09200 1.23273 0.87282 0.96422 1.01488 1.22882 0.84804 0.92351 0.88696 1.92754 1.85055 0.99158 1.81091 0.91508 0.89794 0.89163 0.90290 0.86844 0.90925 0.88773 0.90936 0.88122 0.88141 0.89503 0.87423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.71 10.65 59.85 0.64 2.34 16 2 N -0.52 -11.14 3.17 -124.66 -0.39 -11.53 16 3 C 0.38 8.70 7.50 -155.27 -1.16 7.54 16 4 C -0.44 -9.60 8.98 -38.20 -0.34 -9.94 16 5 H 0.10 1.91 7.11 -52.49 -0.37 1.54 16 6 C 0.08 1.65 5.50 -17.32 -0.10 1.56 16 7 N -0.74 -16.56 11.90 55.55 0.66 -15.90 16 8 Si 0.93 15.71 29.56 -169.99 -5.03 10.68 16 9 H -0.26 -4.41 7.11 56.52 0.40 -4.01 16 10 H -0.27 -4.61 7.11 56.52 0.40 -4.21 16 11 H -0.26 -4.38 7.11 56.52 0.40 -3.98 16 12 N -0.34 -8.03 10.72 31.21 0.33 -7.70 16 13 N -0.38 -8.10 3.56 -65.05 -0.23 -8.33 16 14 C 0.32 5.52 5.52 -63.31 -0.35 5.17 16 15 N -0.53 -8.04 5.31 -235.14 -1.25 -9.29 16 16 C 0.05 0.75 6.43 -2.29 -0.01 0.74 16 17 C -0.14 -1.47 6.31 -24.45 -0.15 -1.62 16 18 C 0.20 2.20 1.50 -91.44 -0.14 2.07 16 19 F -0.17 -2.07 16.93 2.25 0.04 -2.03 16 20 C 0.20 2.34 14.32 -20.76 -0.30 2.05 16 21 N -0.39 -5.39 18.54 42.15 0.78 -4.61 16 22 C 0.05 0.53 6.24 -2.84 -0.02 0.51 16 23 C 0.48 10.87 7.84 -86.93 -0.68 10.19 16 24 S -0.70 -16.69 29.50 -107.50 -3.17 -19.86 16 25 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.08 1.25 7.32 -51.93 -0.38 0.87 16 27 H 0.09 1.54 7.61 -51.93 -0.40 1.14 16 28 H 0.29 5.84 8.30 -40.82 -0.34 5.51 16 29 H 0.11 1.92 7.54 -51.93 -0.39 1.53 16 30 H 0.07 1.17 7.85 -51.93 -0.41 0.76 16 31 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 32 H 0.07 1.15 7.62 -51.93 -0.40 0.75 16 33 H 0.10 1.00 8.03 -51.93 -0.42 0.59 16 34 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.09 0.89 7.52 -51.93 -0.39 0.50 16 36 H 0.11 1.21 7.80 -51.93 -0.41 0.80 16 LS Contribution 332.41 15.07 5.01 5.01 Total: -1.00 -29.05 332.41 -9.82 -38.87 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -3.96 Total: 4.09 kcal Atomic # 6 Polarization: 23.21 SS G_CDS: -2.62 Total: 20.59 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: -0.10 Total: -57.36 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 15.71 SS G_CDS: -5.03 Total: 10.68 kcal Atomic # 16 Polarization: -16.69 SS G_CDS: -3.17 Total: -19.86 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.05 -9.82 -38.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794644768.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.900 kcal (2) G-P(sol) polarization free energy of solvation -29.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds