Wall clock time and date at job start Fri Apr 10 2020 14:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00287 * 2 1 4 4 H 1.09007 * 109.46513 * 30.00380 * 3 2 1 5 5 C 1.50695 * 109.47245 * 150.00086 * 3 2 1 6 6 O 1.20825 * 120.00202 * 5.00381 * 5 3 2 7 7 O 1.34232 * 120.00223 * 185.00469 * 5 3 2 8 8 C 1.45196 * 117.00348 * 180.02562 * 7 5 3 9 9 C 1.50693 * 109.47193 * 179.97438 * 8 7 5 10 10 O 1.21295 * 120.00096 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00179 * 179.97438 * 9 8 7 12 12 C 1.37095 * 120.00120 * 179.97438 * 11 9 8 13 13 H 1.07998 * 120.00005 * 0.02562 * 12 11 9 14 14 C 1.38952 * 120.00041 * 179.97438 * 12 11 9 15 15 N 1.31407 * 120.00036 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00123 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46978 * 60.00206 * 16 14 12 18 18 H 1.48500 * 109.47250 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47379 * 300.00307 * 16 14 12 20 20 C 1.50696 * 109.47130 * 270.00497 * 3 2 1 21 21 C 1.38248 * 119.97128 * 144.99533 * 20 3 2 22 22 C 1.38196 * 120.02483 * 179.97438 * 21 20 3 23 23 C 1.38458 * 119.97492 * 0.02562 * 22 21 20 24 24 F 1.35104 * 120.02786 * 179.97438 * 23 22 21 25 25 C 1.38465 * 119.94675 * 0.24873 * 23 22 21 26 26 C 1.38196 * 119.97501 * 359.51590 * 25 23 22 27 27 H 1.08999 * 109.46613 * 299.99644 * 1 2 3 28 28 H 1.08992 * 109.47546 * 59.99685 * 1 2 3 29 29 H 1.09000 * 109.46697 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46926 * 299.99569 * 8 7 5 31 31 H 1.09001 * 109.47104 * 59.99349 * 8 7 5 32 32 H 0.97002 * 119.99561 * 359.97438 * 11 9 8 33 33 H 0.97002 * 120.00222 * 179.97438 * 15 14 12 34 34 H 1.08002 * 119.98915 * 359.97438 * 21 20 3 35 35 H 1.07995 * 120.01604 * 180.02562 * 22 21 20 36 36 H 1.08007 * 120.01064 * 179.75151 * 25 23 22 37 37 H 1.07993 * 119.98776 * 180.24915 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 3.3387 1.2638 0.7104 6 8 3.7881 0.2084 1.0898 7 8 4.0227 2.3993 0.9216 8 6 5.2951 2.2838 1.6114 9 6 5.9137 3.6502 1.7565 10 8 5.3391 4.6255 1.3208 11 7 7.1056 3.7887 2.3703 12 6 7.6687 5.0317 2.5017 13 1 7.1570 5.9001 2.1138 14 6 8.8972 5.1745 3.1350 15 7 9.5196 4.1180 3.6075 16 14 9.6641 6.8683 3.3148 17 1 8.7538 7.7434 4.0963 18 1 10.9651 6.7503 4.0209 19 1 9.8833 7.4579 1.9695 20 6 2.2145 1.7644 -1.4208 21 6 2.0568 3.0990 -1.7449 22 6 2.2443 3.5212 -3.0473 23 6 2.5898 2.6068 -4.0280 24 9 2.7729 3.0183 -5.3017 25 6 2.7419 1.2694 -3.7032 26 6 2.5587 0.8503 -2.3992 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 5.1350 1.8504 2.5987 31 1 5.9630 1.6420 1.0369 32 1 7.5650 3.0087 2.7190 33 1 10.3774 4.2176 4.0492 34 1 1.7869 3.8121 -0.9799 35 1 2.1214 4.5639 -3.3003 36 1 3.0075 0.5546 -4.4681 37 1 2.6812 -0.1920 -2.1449 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859798222.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:34:20 Heat of formation + Delta-G solvation = -177.503576 kcal Electronic energy + Delta-G solvation = -25000.432835 eV Core-core repulsion = 20851.148098 eV Total energy + Delta-G solvation = -4149.284736 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.105 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.06069 -40.75603 -39.34562 -38.19352 -37.67549 -36.02991 -34.01566 -32.17191 -31.38906 -31.32506 -28.80219 -27.77541 -26.08306 -24.55636 -23.23634 -22.43742 -20.86269 -19.60216 -18.13061 -18.03748 -17.79582 -17.21245 -17.05952 -16.37882 -16.04473 -15.74763 -15.68338 -15.60847 -14.86295 -14.68032 -14.25199 -14.05831 -13.92783 -13.71530 -13.53614 -13.31043 -12.89546 -12.51027 -12.39318 -12.03901 -12.00089 -11.71285 -11.62989 -11.18205 -11.12263 -10.59588 -10.49946 -10.45032 -10.30983 -10.11216 -9.60729 -9.29014 -8.84080 -8.54004 -8.09638 -6.50965 -3.93183 0.81248 1.05676 2.18828 2.26650 3.14580 3.22152 3.26110 3.29423 3.72048 3.74291 4.05033 4.11677 4.27101 4.49883 4.58364 4.67531 4.74426 5.02130 5.05188 5.08173 5.10628 5.13864 5.20675 5.37187 5.49977 5.66880 5.69270 5.72904 5.92962 6.01580 6.03042 6.15137 6.53012 6.63597 6.66206 7.46464 7.78823 7.93698 8.46974 9.05639 9.37795 9.87501 10.66140 Molecular weight = 311.10amu Principal moments of inertia in cm(-1) A = 0.015032 B = 0.003256 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.276523 B = 8597.053136 C = 9877.379218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.354 6.354 3 C 0.148 3.852 4 H 0.111 0.889 5 C 0.462 3.538 6 O -0.489 6.489 7 O -0.320 6.320 8 C 0.061 3.939 9 C 0.439 3.561 10 O -0.576 6.576 11 N -0.551 5.551 12 C -0.304 4.304 13 H 0.106 0.894 14 C 0.026 3.974 15 N -0.897 5.897 16 Si 0.935 3.065 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.272 1.272 20 C -0.133 4.133 21 C -0.056 4.056 22 C -0.153 4.153 23 C 0.108 3.892 24 F -0.139 7.139 25 C -0.160 4.160 26 C -0.059 4.059 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.395 0.605 33 H 0.275 0.725 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.842 -7.510 -9.792 20.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C 0.089 3.911 4 H 0.129 0.871 5 C 0.303 3.697 6 O -0.375 6.375 7 O -0.234 6.234 8 C -0.016 4.016 9 C 0.223 3.777 10 O -0.460 6.460 11 N -0.189 5.189 12 C -0.433 4.433 13 H 0.124 0.876 14 C -0.177 4.177 15 N -0.537 5.537 16 Si 0.761 3.239 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.197 1.197 20 C -0.134 4.134 21 C -0.074 4.074 22 C -0.172 4.172 23 C 0.088 3.912 24 F -0.118 7.118 25 C -0.178 4.178 26 C -0.077 4.077 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.113 0.887 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.229 0.771 33 H 0.085 0.915 34 H 0.160 0.840 35 H 0.158 0.842 36 H 0.155 0.845 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.748 -7.331 -9.895 20.788 hybrid contribution 0.772 0.434 0.194 0.907 sum -15.975 -6.897 -9.701 19.922 Atomic orbital electron populations 1.22955 0.79622 1.03592 1.00645 1.88004 1.20490 1.24036 1.94683 1.20038 0.91507 0.87371 0.92211 0.87143 1.23067 0.86617 0.82608 0.77452 1.90679 1.68200 1.31506 1.47129 1.86504 1.33195 1.33747 1.69983 1.22797 0.82222 0.99090 0.97483 1.19270 0.84000 0.88725 0.85678 1.90556 1.62939 1.39594 1.52888 1.41691 1.16622 1.10389 1.50167 1.19675 1.02200 0.85782 1.35603 0.87648 1.25310 0.96486 0.99474 0.96410 1.69604 1.16643 1.29410 1.38058 0.85860 0.78036 0.81271 0.78735 1.19738 1.20855 1.19741 1.19936 1.04630 0.94437 0.94384 1.20940 0.95908 0.94699 0.95873 1.21138 1.03231 1.00193 0.92659 1.17824 1.00906 0.93284 0.79147 1.91507 1.92736 1.91033 1.36528 1.21128 1.04432 0.94346 0.97942 1.20886 0.95168 1.00456 0.91207 0.93314 0.93327 0.88698 0.89388 0.89462 0.77140 0.91545 0.84043 0.84188 0.84487 0.84212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.81 101.05 1.09 1.30 16 2 O -0.35 -4.09 9.03 -55.13 -0.50 -4.59 16 3 C 0.15 1.78 2.84 -29.04 -0.08 1.70 16 4 H 0.11 1.04 7.70 -51.93 -0.40 0.64 16 5 C 0.46 7.42 7.27 36.00 0.26 7.68 16 6 O -0.49 -8.91 16.26 -25.46 -0.41 -9.32 16 7 O -0.32 -5.84 9.74 -45.91 -0.45 -6.28 16 8 C 0.06 1.17 5.94 36.00 0.21 1.38 16 9 C 0.44 10.45 7.86 -10.99 -0.09 10.36 16 10 O -0.58 -15.66 16.08 -14.12 -0.23 -15.89 16 11 N -0.55 -13.85 5.29 -10.97 -0.06 -13.90 16 12 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 13 H 0.11 3.00 7.16 -52.49 -0.38 2.62 16 14 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 15 N -0.90 -23.95 13.05 55.50 0.72 -23.23 16 16 Si 0.93 20.59 29.55 -169.99 -5.02 15.56 16 17 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 18 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 20 C -0.13 -1.56 4.93 -104.62 -0.52 -2.07 16 21 C -0.06 -0.63 9.68 -39.59 -0.38 -1.01 16 22 C -0.15 -1.70 10.03 -39.52 -0.40 -2.10 16 23 C 0.11 1.25 7.30 -39.42 -0.29 0.96 16 24 F -0.14 -1.68 17.27 2.25 0.04 -1.65 16 25 C -0.16 -1.71 10.03 -39.51 -0.40 -2.10 16 26 C -0.06 -0.66 9.35 -39.59 -0.37 -1.03 16 27 H 0.05 0.30 8.08 -51.93 -0.42 -0.12 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 1.51 8.13 -51.93 -0.42 1.09 16 31 H 0.09 1.53 8.13 -51.93 -0.42 1.11 16 32 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 33 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 34 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 36 H 0.14 1.18 8.06 -52.48 -0.42 0.76 16 37 H 0.14 1.49 7.63 -52.49 -0.40 1.09 16 LS Contribution 342.30 15.07 5.16 5.16 Total: -1.00 -33.04 342.30 -5.95 -38.99 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -4.01 Total: 7.97 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: -1.19 Total: 7.18 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.67 Total: -37.13 kcal Atomic # 8 Polarization: -34.50 SS G_CDS: -1.59 Total: -36.09 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.04 -5.95 -38.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859798222.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.515 kcal (2) G-P(sol) polarization free energy of solvation -33.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds