Wall clock time and date at job start Fri Apr 10 2020 14:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00287 * 2 1 4 4 H 1.09007 * 109.46513 * 30.00380 * 3 2 1 5 5 C 1.50695 * 109.47245 * 150.00086 * 3 2 1 6 6 O 1.20825 * 120.00202 * 5.00381 * 5 3 2 7 7 O 1.34232 * 120.00223 * 185.00469 * 5 3 2 8 8 C 1.45196 * 117.00348 * 180.02562 * 7 5 3 9 9 C 1.50693 * 109.47193 * 179.97438 * 8 7 5 10 10 O 1.21295 * 120.00096 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00179 * 179.97438 * 9 8 7 12 12 C 1.37095 * 120.00120 * 179.97438 * 11 9 8 13 13 H 1.07998 * 120.00005 * 0.02562 * 12 11 9 14 14 C 1.38952 * 120.00041 * 179.97438 * 12 11 9 15 15 N 1.31407 * 120.00036 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00123 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46978 * 60.00206 * 16 14 12 18 18 H 1.48500 * 109.47250 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47379 * 300.00307 * 16 14 12 20 20 C 1.50696 * 109.47130 * 270.00497 * 3 2 1 21 21 C 1.38248 * 119.97128 * 144.99533 * 20 3 2 22 22 C 1.38196 * 120.02483 * 179.97438 * 21 20 3 23 23 C 1.38458 * 119.97492 * 0.02562 * 22 21 20 24 24 F 1.35104 * 120.02786 * 179.97438 * 23 22 21 25 25 C 1.38465 * 119.94675 * 0.24873 * 23 22 21 26 26 C 1.38196 * 119.97501 * 359.51590 * 25 23 22 27 27 H 1.08999 * 109.46613 * 299.99644 * 1 2 3 28 28 H 1.08992 * 109.47546 * 59.99685 * 1 2 3 29 29 H 1.09000 * 109.46697 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46926 * 299.99569 * 8 7 5 31 31 H 1.09001 * 109.47104 * 59.99349 * 8 7 5 32 32 H 0.97002 * 119.99561 * 359.97438 * 11 9 8 33 33 H 0.97002 * 120.00222 * 179.97438 * 15 14 12 34 34 H 1.08002 * 119.98915 * 359.97438 * 21 20 3 35 35 H 1.07995 * 120.01604 * 180.02562 * 22 21 20 36 36 H 1.08007 * 120.01064 * 179.75151 * 25 23 22 37 37 H 1.07993 * 119.98776 * 180.24915 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 3.3387 1.2638 0.7104 6 8 3.7881 0.2084 1.0898 7 8 4.0227 2.3993 0.9216 8 6 5.2951 2.2838 1.6114 9 6 5.9137 3.6502 1.7565 10 8 5.3391 4.6255 1.3208 11 7 7.1056 3.7887 2.3703 12 6 7.6687 5.0317 2.5017 13 1 7.1570 5.9001 2.1138 14 6 8.8972 5.1745 3.1350 15 7 9.5196 4.1180 3.6075 16 14 9.6641 6.8683 3.3148 17 1 8.7538 7.7434 4.0963 18 1 10.9651 6.7503 4.0209 19 1 9.8833 7.4579 1.9695 20 6 2.2145 1.7644 -1.4208 21 6 2.0568 3.0990 -1.7449 22 6 2.2443 3.5212 -3.0473 23 6 2.5898 2.6068 -4.0280 24 9 2.7729 3.0183 -5.3017 25 6 2.7419 1.2694 -3.7032 26 6 2.5587 0.8503 -2.3992 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 5.1350 1.8504 2.5987 31 1 5.9630 1.6420 1.0369 32 1 7.5650 3.0087 2.7190 33 1 10.3774 4.2176 4.0492 34 1 1.7869 3.8121 -0.9799 35 1 2.1214 4.5639 -3.3003 36 1 3.0075 0.5546 -4.4681 37 1 2.6812 -0.1920 -2.1449 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859798222.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:34:20 Heat of formation + Delta-G solvation = -197.346993 kcal Electronic energy + Delta-G solvation = -25001.293310 eV Core-core repulsion = 20851.148098 eV Total energy + Delta-G solvation = -4150.145212 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.105 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.96730 -41.96769 -40.47533 -39.87145 -38.62661 -37.41793 -36.02520 -33.42905 -33.05015 -32.16357 -30.26998 -28.74139 -27.04543 -26.31892 -24.07545 -23.48109 -21.99007 -21.43497 -20.07671 -19.19197 -18.76025 -18.33294 -18.16904 -17.54147 -17.41121 -17.16672 -16.65396 -16.57928 -16.51850 -15.83533 -15.62070 -15.59474 -15.16403 -14.68063 -14.51846 -14.36643 -14.07684 -13.96436 -13.61905 -13.54568 -13.27152 -12.94436 -12.88431 -12.48450 -12.44569 -12.12932 -12.03354 -11.91290 -11.71006 -11.56298 -10.94899 -10.50911 -10.13081 -10.11558 -9.73612 -8.51849 -6.02528 -0.08185 0.21469 0.96335 1.06119 1.38045 1.43819 1.54918 1.87250 2.27664 2.43980 2.75296 3.13646 3.13869 3.18418 3.39036 3.59479 3.68290 3.85863 3.94804 4.02796 4.13344 4.20935 4.28155 4.36901 4.52460 4.57266 4.84750 4.88368 4.91628 5.08472 5.16152 5.19168 5.32041 5.37282 5.80663 5.87037 5.90162 6.44469 6.56470 7.02948 7.39964 7.92940 8.64941 Molecular weight = 311.10amu Principal moments of inertia in cm(-1) A = 0.015032 B = 0.003256 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.276523 B = 8597.053136 C = 9877.379218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.374 6.374 3 C 0.156 3.844 4 H 0.139 0.861 5 C 0.462 3.538 6 O -0.513 6.513 7 O -0.332 6.332 8 C 0.071 3.929 9 C 0.438 3.562 10 O -0.613 6.613 11 N -0.558 5.558 12 C -0.338 4.338 13 H 0.086 0.914 14 C -0.008 4.008 15 N -0.916 5.916 16 Si 0.997 3.003 17 H -0.269 1.269 18 H -0.270 1.270 19 H -0.270 1.270 20 C -0.139 4.139 21 C -0.062 4.062 22 C -0.159 4.159 23 C 0.093 3.907 24 F -0.145 7.145 25 C -0.158 4.158 26 C -0.065 4.065 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.399 0.601 33 H 0.281 0.719 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.156 0.844 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.414 -7.636 -9.830 21.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.293 6.293 3 C 0.097 3.903 4 H 0.156 0.844 5 C 0.304 3.696 6 O -0.401 6.401 7 O -0.248 6.248 8 C -0.006 4.006 9 C 0.225 3.775 10 O -0.500 6.500 11 N -0.195 5.195 12 C -0.467 4.467 13 H 0.104 0.896 14 C -0.209 4.209 15 N -0.556 5.556 16 Si 0.820 3.180 17 H -0.194 1.194 18 H -0.195 1.195 19 H -0.195 1.195 20 C -0.140 4.140 21 C -0.080 4.080 22 C -0.177 4.177 23 C 0.074 3.926 24 F -0.123 7.123 25 C -0.177 4.177 26 C -0.083 4.083 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.121 0.879 32 H 0.234 0.766 33 H 0.090 0.910 34 H 0.171 0.829 35 H 0.171 0.829 36 H 0.173 0.827 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -17.331 -7.489 -9.931 21.333 hybrid contribution 0.883 0.402 0.181 0.987 sum -16.448 -7.087 -9.750 20.392 Atomic orbital electron populations 1.23215 0.77402 1.04993 1.01838 1.87981 1.22822 1.23701 1.94748 1.20066 0.89680 0.88489 0.92088 0.84413 1.23912 0.87390 0.81485 0.76784 1.90662 1.69015 1.32103 1.48322 1.86509 1.32842 1.35281 1.70127 1.22557 0.83125 0.95782 0.99175 1.20006 0.83266 0.90233 0.84016 1.90522 1.63778 1.41561 1.54107 1.41732 1.17220 1.09987 1.50586 1.19698 1.03341 0.86250 1.37447 0.89601 1.26118 0.96251 1.03184 0.95341 1.69666 1.16978 1.31038 1.37888 0.84927 0.77492 0.76822 0.78758 1.19355 1.19494 1.19524 1.19999 1.05014 0.94743 0.94257 1.21118 0.95864 0.94805 0.96221 1.21355 1.02850 1.00929 0.92616 1.18028 1.01576 0.93876 0.79101 1.91491 1.92867 1.91126 1.36861 1.21330 1.03654 0.94426 0.98269 1.20998 0.95224 1.00689 0.91378 0.92017 0.92211 0.87267 0.87340 0.87918 0.76622 0.90976 0.82881 0.82906 0.82667 0.83835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.81 113.37 1.23 1.48 16 2 O -0.37 -7.98 9.03 -129.95 -1.17 -9.15 16 3 C 0.16 3.49 2.84 29.10 0.08 3.57 16 4 H 0.14 2.26 7.70 -2.38 -0.02 2.24 16 5 C 0.46 14.30 7.27 71.23 0.52 14.82 16 6 O -0.51 -18.22 16.26 28.39 0.46 -17.76 16 7 O -0.33 -11.87 9.74 -45.08 -0.44 -12.30 16 8 C 0.07 2.64 5.94 71.23 0.42 3.06 16 9 C 0.44 21.03 7.86 87.65 0.69 21.72 16 10 O -0.61 -33.86 16.08 15.72 0.25 -33.61 16 11 N -0.56 -28.32 5.29 -306.99 -1.62 -29.94 16 12 C -0.34 -18.79 9.68 84.04 0.81 -17.97 16 13 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 14 C -0.01 -0.42 5.50 84.93 0.47 0.04 16 15 N -0.92 -48.43 13.05 21.66 0.28 -48.14 16 16 Si 1.00 41.66 29.55 68.60 2.03 43.68 16 17 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 18 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 19 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 20 C -0.14 -3.07 4.93 -19.86 -0.10 -3.16 16 21 C -0.06 -1.31 9.68 22.26 0.22 -1.09 16 22 C -0.16 -3.36 10.03 22.31 0.22 -3.14 16 23 C 0.09 2.08 7.30 22.38 0.16 2.24 16 24 F -0.14 -3.39 17.27 44.97 0.78 -2.61 16 25 C -0.16 -3.19 10.03 22.31 0.22 -2.97 16 26 C -0.06 -1.37 9.35 22.26 0.21 -1.17 16 27 H 0.06 0.60 8.08 -2.39 -0.02 0.58 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.59 16 29 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.11 3.60 8.13 -2.38 -0.02 3.58 16 31 H 0.10 3.52 8.13 -2.39 -0.02 3.50 16 32 H 0.40 19.19 7.90 -92.71 -0.73 18.46 16 33 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 34 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 35 H 0.15 2.72 8.06 -2.91 -0.02 2.69 16 36 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 37 H 0.14 2.89 7.63 -2.91 -0.02 2.87 16 Total: -1.00 -70.41 342.30 6.11 -64.30 By element: Atomic # 1 Polarization: 27.71 SS G_CDS: 0.39 Total: 28.10 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: 5.16 Total: 17.44 kcal Atomic # 7 Polarization: -76.75 SS G_CDS: -1.34 Total: -78.09 kcal Atomic # 8 Polarization: -71.92 SS G_CDS: -0.90 Total: -72.82 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.78 Total: -2.61 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.68 kcal Total: -70.41 6.11 -64.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859798222.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.047 kcal (2) G-P(sol) polarization free energy of solvation -70.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds