Wall clock time and date at job start Fri Apr 10 2020 14:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 113.99570 * 2 1 4 4 H 1.08995 * 109.47538 * 30.00417 * 3 2 1 5 5 C 1.50700 * 109.47163 * 269.99927 * 3 2 1 6 6 O 1.20822 * 119.99958 * 355.00163 * 5 3 2 7 7 O 1.34234 * 120.00068 * 175.00355 * 5 3 2 8 8 C 1.45196 * 116.99938 * 179.97438 * 7 5 3 9 9 C 1.50704 * 109.47016 * 179.97438 * 8 7 5 10 10 O 1.21296 * 119.99980 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99643 * 180.02562 * 9 8 7 12 12 C 1.37102 * 119.99435 * 180.02562 * 11 9 8 13 13 H 1.07996 * 120.00513 * 359.97438 * 12 11 9 14 14 C 1.38947 * 119.99665 * 179.97438 * 12 11 9 15 15 N 1.31413 * 120.00112 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00018 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47105 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47020 * 119.99682 * 16 14 12 19 19 H 1.48495 * 109.47374 * 239.99722 * 16 14 12 20 20 C 1.50703 * 109.46883 * 150.00279 * 3 2 1 21 21 C 1.38244 * 119.97613 * 39.72339 * 20 3 2 22 22 C 1.38201 * 120.02516 * 179.76950 * 21 20 3 23 23 C 1.38461 * 119.97371 * 0.50800 * 22 21 20 24 24 F 1.35100 * 120.02418 * 179.76854 * 23 22 21 25 25 C 1.38462 * 119.94892 * 359.74162 * 23 22 21 26 26 C 1.38202 * 119.97424 * 0.02562 * 25 23 22 27 27 H 1.09003 * 109.47289 * 180.02562 * 1 2 3 28 28 H 1.09010 * 109.47331 * 299.99831 * 1 2 3 29 29 H 1.08996 * 109.47270 * 59.99630 * 1 2 3 30 30 H 1.08996 * 109.47465 * 299.99911 * 8 7 5 31 31 H 1.08999 * 109.47008 * 59.99921 * 8 7 5 32 32 H 0.96994 * 120.00272 * 359.97438 * 11 9 8 33 33 H 0.97005 * 120.00218 * 179.97438 * 15 14 12 34 34 H 1.08001 * 119.98561 * 0.02562 * 21 20 3 35 35 H 1.07998 * 120.01232 * 180.24986 * 22 21 20 36 36 H 1.07999 * 120.00951 * 179.97438 * 25 23 22 37 37 H 1.07991 * 119.98408 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2144 1.7644 -1.4208 6 8 1.9799 1.0135 -2.3378 7 8 2.6569 3.0075 -1.6676 8 6 2.8310 3.3809 -3.0599 9 6 3.3295 4.8008 -3.1405 10 8 3.5189 5.4357 -2.1245 11 7 3.5639 5.3655 -4.3416 12 6 4.0179 6.6570 -4.4149 13 1 4.1874 7.2221 -3.5103 14 6 4.2601 7.2390 -5.6532 15 7 4.0544 6.5513 -6.7540 16 14 4.8780 8.9991 -5.7532 17 1 5.0280 9.5497 -4.3823 18 1 6.1931 9.0235 -6.4425 19 1 3.9048 9.8229 -6.5144 20 6 3.3385 1.2639 0.7104 21 6 4.1867 0.1878 0.5266 22 6 5.4073 0.1510 1.1739 23 6 5.7759 1.1873 2.0148 24 9 6.9668 1.1501 2.6516 25 6 4.9234 2.2622 2.2021 26 6 3.7054 2.2992 1.5500 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 3.5556 2.7140 -3.5271 31 1 1.8762 3.3014 -3.5795 32 1 3.4121 4.8579 -5.1541 33 1 4.2231 6.9577 -7.6185 34 1 3.8972 -0.6224 -0.1262 35 1 6.0714 -0.6879 1.0270 36 1 5.2098 3.0709 2.8581 37 1 3.0405 3.1376 1.6957 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859798223.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:34:22 Heat of formation + Delta-G solvation = -199.039661 kcal Electronic energy + Delta-G solvation = -25003.712046 eV Core-core repulsion = 20853.493435 eV Total energy + Delta-G solvation = -4150.218611 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.105 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.95477 -41.99715 -40.42508 -39.85531 -38.71387 -37.35915 -36.03306 -33.43912 -33.15504 -32.17314 -30.26258 -28.52402 -27.23984 -26.35726 -24.08044 -23.46229 -21.99440 -21.44396 -20.08479 -19.25788 -18.74711 -18.35850 -18.15481 -17.55315 -17.44871 -17.11034 -16.65418 -16.61415 -16.51381 -15.82306 -15.64930 -15.53136 -15.20469 -14.66868 -14.51976 -14.37825 -14.08672 -13.96201 -13.65858 -13.56692 -13.26303 -12.94882 -12.72276 -12.48019 -12.46591 -12.12279 -12.09392 -11.98838 -11.91077 -11.58532 -10.91610 -10.50762 -10.12066 -10.11810 -9.72826 -8.52814 -6.03380 -0.07104 0.22695 0.94176 1.20566 1.34518 1.44012 1.58339 1.86064 2.27973 2.36045 2.68433 3.03608 3.12795 3.20285 3.45040 3.59149 3.67074 3.87186 3.94440 4.01664 4.12080 4.20032 4.28100 4.38907 4.46014 4.51619 4.83722 4.84849 4.92099 5.09054 5.15710 5.20529 5.33097 5.37150 5.77848 5.82966 5.88925 6.43661 6.55794 7.02552 7.39249 7.92231 8.64459 Molecular weight = 311.10amu Principal moments of inertia in cm(-1) A = 0.013959 B = 0.003339 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.421052 B = 8382.627205 C = 9805.105385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.362 6.362 3 C 0.156 3.844 4 H 0.141 0.859 5 C 0.438 3.562 6 O -0.516 6.516 7 O -0.334 6.334 8 C 0.070 3.930 9 C 0.438 3.562 10 O -0.613 6.613 11 N -0.559 5.559 12 C -0.337 4.337 13 H 0.086 0.914 14 C -0.009 4.009 15 N -0.916 5.916 16 Si 0.997 3.003 17 H -0.270 1.270 18 H -0.271 1.271 19 H -0.269 1.269 20 C -0.115 4.115 21 C -0.066 4.066 22 C -0.159 4.159 23 C 0.094 3.906 24 F -0.144 7.144 25 C -0.157 4.157 26 C -0.061 4.061 27 H 0.112 0.888 28 H 0.073 0.927 29 H 0.038 0.962 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.399 0.601 33 H 0.281 0.719 34 H 0.141 0.859 35 H 0.155 0.845 36 H 0.157 0.843 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.531 -13.330 14.809 20.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.279 6.279 3 C 0.096 3.904 4 H 0.158 0.842 5 C 0.280 3.720 6 O -0.405 6.405 7 O -0.249 6.249 8 C -0.008 4.008 9 C 0.225 3.775 10 O -0.500 6.500 11 N -0.196 5.196 12 C -0.466 4.466 13 H 0.104 0.896 14 C -0.209 4.209 15 N -0.556 5.556 16 Si 0.820 3.180 17 H -0.195 1.195 18 H -0.196 1.196 19 H -0.194 1.194 20 C -0.116 4.116 21 C -0.084 4.084 22 C -0.178 4.178 23 C 0.074 3.926 24 F -0.123 7.123 25 C -0.176 4.176 26 C -0.079 4.079 27 H 0.130 0.870 28 H 0.092 0.908 29 H 0.057 0.943 30 H 0.119 0.881 31 H 0.125 0.875 32 H 0.234 0.766 33 H 0.090 0.910 34 H 0.159 0.841 35 H 0.173 0.827 36 H 0.175 0.825 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -4.301 -13.251 14.999 20.471 hybrid contribution 0.293 0.595 -1.007 1.205 sum -4.009 -12.656 13.992 19.288 Atomic orbital electron populations 1.23229 0.78179 1.05190 1.01308 1.88016 1.22559 1.23567 1.93800 1.20290 0.95559 0.88173 0.86373 0.84193 1.25135 0.73132 0.79373 0.94338 1.90652 1.47636 1.54970 1.47212 1.86553 1.76619 1.32219 1.29549 1.22534 1.03725 0.93999 0.80500 1.20034 0.84672 0.88702 0.84133 1.90524 1.58335 1.65469 1.35641 1.41751 1.57805 1.13508 1.06541 1.19765 1.42969 0.89513 0.94312 0.89648 1.26119 0.96716 1.04220 0.93860 1.69680 1.48130 1.39323 0.98486 0.84806 0.78155 0.76508 0.78491 1.19455 1.19583 1.19425 1.19386 0.94796 0.97178 1.00238 1.21001 0.92148 0.97734 0.97526 1.21324 0.98349 0.99668 0.98436 1.18022 0.82136 0.97004 0.95395 1.91491 1.43976 1.96648 1.80178 1.21362 0.94448 0.98673 1.03099 1.21108 0.96281 0.97417 0.93085 0.86995 0.90813 0.94282 0.88079 0.87475 0.76645 0.90991 0.84095 0.82698 0.82548 0.82409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 10.81 113.37 1.23 1.47 16 2 O -0.36 -7.72 9.20 -129.95 -1.20 -8.92 16 3 C 0.16 3.48 2.83 29.10 0.08 3.56 16 4 H 0.14 2.26 7.65 -2.39 -0.02 2.24 16 5 C 0.44 13.28 7.22 71.24 0.51 13.79 16 6 O -0.52 -17.66 16.25 28.39 0.46 -17.20 16 7 O -0.33 -11.92 9.74 -45.11 -0.44 -12.36 16 8 C 0.07 2.60 5.94 71.24 0.42 3.02 16 9 C 0.44 21.07 7.86 87.66 0.69 21.76 16 10 O -0.61 -34.01 16.08 15.72 0.25 -33.76 16 11 N -0.56 -28.38 5.29 -306.98 -1.62 -30.01 16 12 C -0.34 -18.71 9.68 84.04 0.81 -17.89 16 13 H 0.09 5.03 7.16 -2.91 -0.02 5.01 16 14 C -0.01 -0.44 5.50 84.93 0.47 0.02 16 15 N -0.92 -48.38 13.05 21.66 0.28 -48.09 16 16 Si 1.00 41.67 29.55 68.60 2.03 43.69 16 17 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 18 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 19 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 20 C -0.12 -2.62 4.95 -19.86 -0.10 -2.71 16 21 C -0.07 -1.47 9.35 22.26 0.21 -1.26 16 22 C -0.16 -3.34 10.03 22.31 0.22 -3.12 16 23 C 0.09 2.11 7.30 22.38 0.16 2.27 16 24 F -0.14 -3.40 17.27 44.97 0.78 -2.63 16 25 C -0.16 -3.30 10.03 22.31 0.22 -3.07 16 26 C -0.06 -1.28 9.67 22.26 0.22 -1.06 16 27 H 0.11 1.25 8.14 -2.39 -0.02 1.24 16 28 H 0.07 0.72 8.09 -2.38 -0.02 0.71 16 29 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.10 3.48 8.13 -2.39 -0.02 3.46 16 31 H 0.11 3.55 8.13 -2.39 -0.02 3.53 16 32 H 0.40 19.19 7.90 -92.71 -0.73 18.46 16 33 H 0.28 13.78 8.31 -92.70 -0.77 13.01 16 34 H 0.14 3.02 7.77 -2.91 -0.02 2.99 16 35 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 36 H 0.16 2.67 8.06 -2.91 -0.02 2.64 16 37 H 0.16 2.67 8.03 -2.92 -0.02 2.65 16 Total: -1.00 -70.28 342.49 6.08 -64.20 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: 0.39 Total: 28.29 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: 5.15 Total: 16.78 kcal Atomic # 7 Polarization: -76.76 SS G_CDS: -1.34 Total: -78.10 kcal Atomic # 8 Polarization: -71.31 SS G_CDS: -0.92 Total: -72.23 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.78 Total: -2.63 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.69 kcal Total: -70.28 6.08 -64.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859798223.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.843 kcal (2) G-P(sol) polarization free energy of solvation -70.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds