Wall clock time and date at job start Fri Apr 10 2020 14:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 119.99787 * 2 1 4 4 C 1.53004 * 109.47130 * 269.99835 * 3 2 1 5 5 S 1.81399 * 109.46985 * 180.02562 * 4 3 2 6 6 C 1.81392 * 101.92241 * 180.02562 * 5 4 3 7 7 O 1.42101 * 108.58202 * 294.48969 * 5 4 3 8 8 O 1.42098 * 108.57958 * 65.51273 * 5 4 3 9 9 C 1.34779 * 120.00030 * 180.02562 * 2 1 3 10 10 O 1.21605 * 120.00123 * 184.63207 * 9 2 1 11 11 C 1.47437 * 119.99783 * 4.62724 * 9 2 1 12 12 C 1.39221 * 120.28656 * 309.21779 * 11 9 2 13 13 C 1.38220 * 120.09551 * 180.27856 * 12 11 9 14 14 C 1.38828 * 120.67359 * 359.72532 * 13 12 11 15 15 C 1.37599 * 120.56825 * 359.97438 * 14 13 12 16 16 C 1.40703 * 119.88653 * 359.97438 * 15 14 13 17 17 C 1.40884 * 120.33256 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00209 * 214.27376 * 17 16 15 19 19 C 1.40274 * 119.99898 * 34.26711 * 17 16 15 20 20 N 1.30630 * 119.99906 * 193.85731 * 19 17 16 21 21 Si 1.86796 * 119.99945 * 13.86353 * 19 17 16 22 22 H 1.48506 * 109.47229 * 267.85807 * 21 19 17 23 23 H 1.48501 * 109.47617 * 27.85648 * 21 19 17 24 24 H 1.48501 * 109.47259 * 147.86180 * 21 19 17 25 25 H 1.08999 * 109.47352 * 273.10897 * 1 2 3 26 26 H 1.09004 * 109.47328 * 33.11497 * 1 2 3 27 27 H 1.09006 * 109.46910 * 153.10955 * 1 2 3 28 28 H 1.08996 * 109.47246 * 30.00380 * 3 2 1 29 29 H 1.09003 * 109.46905 * 149.99940 * 3 2 1 30 30 H 1.08991 * 109.47041 * 300.00262 * 4 3 2 31 31 H 1.08998 * 109.46686 * 60.00366 * 4 3 2 32 32 H 1.09004 * 109.47257 * 60.00216 * 6 5 4 33 33 H 1.08999 * 109.47665 * 179.97438 * 6 5 4 34 34 H 1.09000 * 109.47357 * 300.00412 * 6 5 4 35 35 H 1.08003 * 119.95582 * 0.02562 * 12 11 9 36 36 H 1.07995 * 119.66261 * 179.73785 * 13 12 11 37 37 H 1.07997 * 119.71251 * 180.02562 * 14 13 12 38 38 H 1.08001 * 120.05816 * 180.02562 * 15 14 13 39 39 H 0.97005 * 119.99479 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 16 3.3601 3.2810 -1.4425 6 6 3.5467 3.6060 -3.2173 7 8 2.5254 4.2863 -0.8840 8 8 4.6480 3.0597 -0.8843 9 6 2.1389 -1.1672 -0.0005 10 8 3.3520 -1.1690 0.0845 11 6 1.4053 -2.4419 -0.1041 12 6 0.3337 -2.7062 0.7444 13 6 -0.3477 -3.9049 0.6477 14 6 0.0208 -4.8549 -0.2952 15 6 1.0717 -4.6198 -1.1517 16 6 1.7811 -3.4072 -1.0747 17 6 2.8583 -3.1564 -1.9474 18 1 3.7086 -2.5852 -1.6055 19 6 2.8264 -3.6489 -3.2605 20 7 3.9159 -3.6582 -3.9812 21 14 1.2261 -4.2913 -3.9785 22 1 1.1285 -5.7539 -3.7404 23 1 0.0809 -3.6063 -3.3268 24 1 1.1965 -4.0245 -5.4390 25 1 -0.3634 0.0557 1.0261 26 1 -0.3634 0.8608 -0.5614 27 1 -0.3633 -0.9166 -0.4648 28 1 1.6084 2.0283 0.5139 29 1 3.1499 1.1384 0.5139 30 1 3.0415 0.9508 -1.9563 31 1 1.5000 1.8407 -1.9563 32 1 2.5619 3.6812 -3.6784 33 1 4.0869 4.5418 -3.3605 34 1 4.1030 2.7905 -3.6795 35 1 0.0368 -1.9753 1.4821 36 1 -1.1752 -4.1044 1.3123 37 1 -0.5227 -5.7861 -0.3574 38 1 1.3510 -5.3645 -1.8824 39 1 3.8937 -3.9984 -4.8894 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865146380.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:32:03 Heat of formation + Delta-G solvation = -77.345774 kcal Electronic energy + Delta-G solvation = -24022.307257 eV Core-core repulsion = 20443.578865 eV Total energy + Delta-G solvation = -3578.728392 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.102 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.52388 -37.32319 -37.00448 -36.06936 -35.31279 -33.76783 -31.91535 -30.63561 -29.89035 -29.51368 -26.45106 -25.54945 -23.96160 -21.90274 -21.06141 -18.92128 -18.82172 -17.52803 -16.91460 -16.76444 -16.15794 -16.07792 -15.69747 -15.28980 -14.76054 -14.40971 -14.01949 -13.81459 -13.57954 -13.41058 -13.31051 -12.87300 -12.70429 -12.44668 -12.41707 -12.12231 -12.11638 -12.01916 -11.95938 -11.66323 -11.25319 -11.15209 -10.98483 -10.89314 -10.72261 -10.51598 -10.14469 -9.92572 -9.32999 -8.84833 -8.30327 -7.86530 -7.75694 -7.06277 -4.65368 -0.09057 2.13005 2.50652 2.66502 2.98700 3.05858 3.16396 3.32360 3.66923 3.68429 3.83687 3.96178 4.36273 4.63029 4.66438 4.70591 4.89346 5.21574 5.27169 5.40494 5.46677 5.50640 5.64665 5.78804 5.83966 5.95048 5.96932 6.05658 6.26139 6.46118 6.69200 6.86571 7.00093 7.14259 7.34788 7.48565 7.66512 7.89919 7.95297 8.30546 8.49801 8.68314 8.99316 9.93573 Molecular weight = 311.10amu Principal moments of inertia in cm(-1) A = 0.015189 B = 0.004856 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.993848 B = 5764.481015 C = 6855.867564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.619 5.619 3 C 0.133 3.867 4 C -0.629 4.629 5 S 2.424 3.576 6 C -0.656 4.656 7 O -0.946 6.946 8 O -0.934 6.934 9 C 0.584 3.416 10 O -0.533 6.533 11 C -0.243 4.243 12 C -0.045 4.045 13 C -0.250 4.250 14 C -0.065 4.065 15 C -0.230 4.230 16 C 0.126 3.874 17 C -0.436 4.436 18 H 0.113 0.887 19 C 0.082 3.918 20 N -0.794 5.794 21 Si 0.908 3.092 22 H -0.266 1.266 23 H -0.244 1.244 24 H -0.289 1.289 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.143 0.857 31 H 0.132 0.868 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.131 0.869 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.452 9.733 -0.319 12.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.354 5.354 3 C 0.008 3.992 4 C -0.760 4.760 5 S 2.605 3.395 6 C -0.805 4.805 7 O -0.943 6.943 8 O -0.932 6.932 9 C 0.376 3.624 10 O -0.409 6.409 11 C -0.248 4.248 12 C -0.064 4.064 13 C -0.269 4.269 14 C -0.083 4.083 15 C -0.249 4.249 16 C 0.122 3.878 17 C -0.463 4.463 18 H 0.131 0.869 19 C -0.138 4.138 20 N -0.417 5.417 21 Si 0.734 3.266 22 H -0.192 1.192 23 H -0.167 1.167 24 H -0.216 1.216 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.107 0.893 28 H 0.104 0.896 29 H 0.116 0.884 30 H 0.161 0.839 31 H 0.150 0.850 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.150 0.850 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.124 0.876 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.294 10.211 0.204 11.996 hybrid contribution -0.974 -0.878 -1.377 1.901 sum -7.268 9.333 -1.173 11.887 Atomic orbital electron populations 1.21916 0.79768 1.03661 1.01203 1.47753 1.06701 1.04851 1.76073 1.20882 0.99776 0.87158 0.91378 1.30812 1.15183 1.22009 1.07979 1.07701 0.76177 0.77377 0.78201 1.30256 1.11694 1.12144 1.26414 1.93577 1.69343 1.55801 1.75566 1.93623 1.38692 1.85630 1.75210 1.18505 0.86877 0.83211 0.73802 1.90706 1.14250 1.87146 1.48796 1.19354 1.02205 0.95079 1.08115 1.20788 0.93191 0.96207 0.96229 1.20304 1.05036 0.96676 1.04922 1.20754 0.95468 0.97314 0.94787 1.21112 1.01686 0.97979 1.04120 1.17453 0.90422 0.89021 0.90904 1.19908 1.03389 1.28053 0.94968 0.86944 1.26323 0.97990 0.92075 0.97459 1.69600 1.28817 1.33052 1.10244 0.86367 0.83007 0.80234 0.76956 1.19214 1.16731 1.21602 0.93054 0.92173 0.89340 0.89573 0.88378 0.83885 0.84999 0.85429 0.85422 0.85010 0.88170 0.88375 0.88501 0.87646 0.90182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.05 9.13 59.85 0.55 1.60 16 2 N -0.62 -10.61 2.87 -182.84 -0.53 -11.14 16 3 C 0.13 1.96 5.46 -4.04 -0.02 1.94 16 4 C -0.63 -7.64 6.13 37.16 0.23 -7.42 16 5 S 2.42 26.68 5.36 -107.50 -0.58 26.10 16 6 C -0.66 -4.94 10.62 101.05 1.07 -3.87 16 7 O -0.95 -12.52 18.10 -57.83 -1.05 -13.57 16 8 O -0.93 -14.46 18.10 -57.83 -1.05 -15.50 16 9 C 0.58 12.89 6.70 -12.51 -0.08 12.80 16 10 O -0.53 -13.64 14.84 5.27 0.08 -13.57 16 11 C -0.24 -5.48 4.89 -104.36 -0.51 -5.99 16 12 C -0.05 -0.88 7.64 -39.22 -0.30 -1.18 16 13 C -0.25 -4.70 10.03 -39.37 -0.39 -5.10 16 14 C -0.06 -1.29 10.01 -39.60 -0.40 -1.69 16 15 C -0.23 -5.25 7.13 -38.88 -0.28 -5.53 16 16 C 0.13 3.12 5.05 -106.54 -0.54 2.58 16 17 C -0.44 -11.71 8.84 -37.82 -0.33 -12.05 16 18 H 0.11 3.37 6.39 -52.49 -0.34 3.04 16 19 C 0.08 2.08 5.44 -17.30 -0.09 1.99 16 20 N -0.79 -20.58 13.92 55.56 0.77 -19.80 16 21 Si 0.91 19.57 24.54 -169.99 -4.17 15.40 16 22 H -0.27 -5.56 6.66 56.52 0.38 -5.19 16 23 H -0.24 -5.29 6.90 56.52 0.39 -4.90 16 24 H -0.29 -5.98 7.11 56.52 0.40 -5.57 16 25 H 0.05 0.59 7.63 -51.93 -0.40 0.20 16 26 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 27 H 0.09 1.33 5.72 -51.93 -0.30 1.03 16 28 H 0.09 0.99 8.07 -51.93 -0.42 0.57 16 29 H 0.10 1.60 7.36 -51.93 -0.38 1.22 16 30 H 0.14 1.98 8.14 -51.93 -0.42 1.56 16 31 H 0.13 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.13 0.70 8.14 -51.92 -0.42 0.28 16 33 H 0.13 0.82 8.14 -51.92 -0.42 0.40 16 34 H 0.13 0.94 8.14 -51.92 -0.42 0.51 16 35 H 0.10 1.65 6.74 -52.48 -0.35 1.29 16 36 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 38 H 0.11 2.39 4.94 -52.49 -0.26 2.13 16 39 H 0.29 6.67 8.29 -40.82 -0.34 6.33 16 LS Contribution 335.55 15.07 5.06 5.06 Total: -1.00 -35.08 335.55 -7.55 -42.63 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -4.99 Total: 6.29 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: -1.10 Total: -21.91 kcal Atomic # 7 Polarization: -31.19 SS G_CDS: 0.25 Total: -30.94 kcal Atomic # 8 Polarization: -40.62 SS G_CDS: -2.01 Total: -42.64 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -4.17 Total: 15.40 kcal Atomic # 16 Polarization: 26.68 SS G_CDS: -0.58 Total: 26.10 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.08 -7.55 -42.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865146380.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.711 kcal (2) G-P(sol) polarization free energy of solvation -35.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds