Wall clock time and date at job start Fri Apr 10 2020 14:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 119.99787 * 2 1 4 4 C 1.53004 * 109.47130 * 269.99835 * 3 2 1 5 5 S 1.81399 * 109.46985 * 180.02562 * 4 3 2 6 6 C 1.81392 * 101.92241 * 180.02562 * 5 4 3 7 7 O 1.42101 * 108.58202 * 294.48969 * 5 4 3 8 8 O 1.42098 * 108.57958 * 65.51273 * 5 4 3 9 9 C 1.34779 * 120.00030 * 180.02562 * 2 1 3 10 10 O 1.21605 * 120.00123 * 184.63207 * 9 2 1 11 11 C 1.47437 * 119.99783 * 4.62724 * 9 2 1 12 12 C 1.39221 * 120.28656 * 309.21779 * 11 9 2 13 13 C 1.38220 * 120.09551 * 180.27856 * 12 11 9 14 14 C 1.38828 * 120.67359 * 359.72532 * 13 12 11 15 15 C 1.37599 * 120.56825 * 359.97438 * 14 13 12 16 16 C 1.40703 * 119.88653 * 359.97438 * 15 14 13 17 17 C 1.40884 * 120.33256 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00209 * 214.27376 * 17 16 15 19 19 C 1.40274 * 119.99898 * 34.26711 * 17 16 15 20 20 N 1.30630 * 119.99906 * 193.85731 * 19 17 16 21 21 Si 1.86796 * 119.99945 * 13.86353 * 19 17 16 22 22 H 1.48506 * 109.47229 * 267.85807 * 21 19 17 23 23 H 1.48501 * 109.47617 * 27.85648 * 21 19 17 24 24 H 1.48501 * 109.47259 * 147.86180 * 21 19 17 25 25 H 1.08999 * 109.47352 * 273.10897 * 1 2 3 26 26 H 1.09004 * 109.47328 * 33.11497 * 1 2 3 27 27 H 1.09006 * 109.46910 * 153.10955 * 1 2 3 28 28 H 1.08996 * 109.47246 * 30.00380 * 3 2 1 29 29 H 1.09003 * 109.46905 * 149.99940 * 3 2 1 30 30 H 1.08991 * 109.47041 * 300.00262 * 4 3 2 31 31 H 1.08998 * 109.46686 * 60.00366 * 4 3 2 32 32 H 1.09004 * 109.47257 * 60.00216 * 6 5 4 33 33 H 1.08999 * 109.47665 * 179.97438 * 6 5 4 34 34 H 1.09000 * 109.47357 * 300.00412 * 6 5 4 35 35 H 1.08003 * 119.95582 * 0.02562 * 12 11 9 36 36 H 1.07995 * 119.66261 * 179.73785 * 13 12 11 37 37 H 1.07997 * 119.71251 * 180.02562 * 14 13 12 38 38 H 1.08001 * 120.05816 * 180.02562 * 15 14 13 39 39 H 0.97005 * 119.99479 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 16 3.3601 3.2810 -1.4425 6 6 3.5467 3.6060 -3.2173 7 8 2.5254 4.2863 -0.8840 8 8 4.6480 3.0597 -0.8843 9 6 2.1389 -1.1672 -0.0005 10 8 3.3520 -1.1690 0.0845 11 6 1.4053 -2.4419 -0.1041 12 6 0.3337 -2.7062 0.7444 13 6 -0.3477 -3.9049 0.6477 14 6 0.0208 -4.8549 -0.2952 15 6 1.0717 -4.6198 -1.1517 16 6 1.7811 -3.4072 -1.0747 17 6 2.8583 -3.1564 -1.9474 18 1 3.7086 -2.5852 -1.6055 19 6 2.8264 -3.6489 -3.2605 20 7 3.9159 -3.6582 -3.9812 21 14 1.2261 -4.2913 -3.9785 22 1 1.1285 -5.7539 -3.7404 23 1 0.0809 -3.6063 -3.3268 24 1 1.1965 -4.0245 -5.4390 25 1 -0.3634 0.0557 1.0261 26 1 -0.3634 0.8608 -0.5614 27 1 -0.3633 -0.9166 -0.4648 28 1 1.6084 2.0283 0.5139 29 1 3.1499 1.1384 0.5139 30 1 3.0415 0.9508 -1.9563 31 1 1.5000 1.8407 -1.9563 32 1 2.5619 3.6812 -3.6784 33 1 4.0869 4.5418 -3.3605 34 1 4.1030 2.7905 -3.6795 35 1 0.0368 -1.9753 1.4821 36 1 -1.1752 -4.1044 1.3123 37 1 -0.5227 -5.7861 -0.3574 38 1 1.3510 -5.3645 -1.8824 39 1 3.8937 -3.9984 -4.8894 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865146380.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:32:03 Heat of formation + Delta-G solvation = -104.902376 kcal Electronic energy + Delta-G solvation = -24023.502201 eV Core-core repulsion = 20443.578865 eV Total energy + Delta-G solvation = -3579.923336 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.102 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.11968 -38.95850 -38.04114 -37.12971 -36.82207 -35.56521 -33.20564 -32.38891 -31.22030 -30.37090 -27.74439 -27.20373 -25.35979 -23.48732 -22.67992 -20.35536 -19.86700 -19.33584 -18.30075 -17.95920 -17.36123 -17.18557 -17.05422 -16.72357 -16.22269 -15.94571 -15.47239 -15.29077 -14.91118 -14.53016 -14.29690 -14.05856 -13.98517 -13.97377 -13.76810 -13.51750 -13.38676 -13.18946 -13.14493 -13.07655 -12.72141 -12.49434 -12.39141 -12.15398 -12.10396 -11.97256 -11.67200 -11.64293 -11.07386 -10.55625 -9.69344 -9.49587 -9.49482 -8.89952 -6.57317 -0.99165 0.45736 0.81925 1.24728 1.36365 1.46747 1.79180 1.87356 2.09352 2.21162 2.59370 2.69176 3.07754 3.43310 3.62011 3.66746 4.02759 4.07425 4.19113 4.23529 4.26046 4.37696 4.41628 4.54803 4.68430 4.72079 4.83980 4.87467 4.93386 4.98740 5.00746 5.27540 5.42857 5.61192 5.71531 5.82996 5.95611 6.20038 6.35897 6.44758 6.72357 6.76198 7.36939 8.17380 Molecular weight = 311.10amu Principal moments of inertia in cm(-1) A = 0.015189 B = 0.004856 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.993848 B = 5764.481015 C = 6855.867564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.611 5.611 3 C 0.118 3.882 4 C -0.632 4.632 5 S 2.441 3.559 6 C -0.635 4.635 7 O -0.965 6.965 8 O -0.989 6.989 9 C 0.573 3.427 10 O -0.589 6.589 11 C -0.256 4.256 12 C -0.043 4.043 13 C -0.225 4.225 14 C -0.063 4.063 15 C -0.248 4.248 16 C 0.106 3.894 17 C -0.480 4.480 18 H 0.057 0.943 19 C 0.043 3.957 20 N -0.847 5.847 21 Si 0.970 3.030 22 H -0.254 1.254 23 H -0.244 1.244 24 H -0.276 1.276 25 H 0.079 0.921 26 H 0.095 0.905 27 H 0.074 0.926 28 H 0.125 0.875 29 H 0.068 0.932 30 H 0.117 0.883 31 H 0.168 0.832 32 H 0.160 0.840 33 H 0.147 0.853 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.144 0.856 37 H 0.136 0.864 38 H 0.102 0.898 39 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.145 10.240 -0.080 15.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.344 5.344 3 C -0.006 4.006 4 C -0.761 4.761 5 S 2.626 3.374 6 C -0.789 4.789 7 O -0.962 6.962 8 O -0.986 6.986 9 C 0.365 3.635 10 O -0.469 6.469 11 C -0.260 4.260 12 C -0.061 4.061 13 C -0.243 4.243 14 C -0.082 4.082 15 C -0.267 4.267 16 C 0.103 3.897 17 C -0.509 4.509 18 H 0.075 0.925 19 C -0.172 4.172 20 N -0.473 5.473 21 Si 0.791 3.209 22 H -0.179 1.179 23 H -0.167 1.167 24 H -0.202 1.202 25 H 0.098 0.902 26 H 0.114 0.886 27 H 0.093 0.907 28 H 0.143 0.857 29 H 0.086 0.914 30 H 0.135 0.865 31 H 0.185 0.815 32 H 0.178 0.822 33 H 0.166 0.834 34 H 0.156 0.844 35 H 0.153 0.847 36 H 0.162 0.838 37 H 0.154 0.846 38 H 0.119 0.881 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.039 10.732 0.500 15.404 hybrid contribution 0.325 -0.934 -1.232 1.580 sum -10.715 9.798 -0.732 14.538 Atomic orbital electron populations 1.22237 0.76993 1.04650 1.03524 1.47763 1.08422 1.04142 1.74099 1.21159 0.99081 0.86999 0.93353 1.30802 1.16953 1.22034 1.06313 1.07010 0.74418 0.76041 0.79920 1.30075 1.14198 1.13326 1.21264 1.93541 1.69429 1.55704 1.77558 1.93557 1.41047 1.86065 1.77968 1.18702 0.86338 0.84796 0.73653 1.90677 1.16625 1.88091 1.51552 1.19711 1.03070 0.95174 1.08061 1.21176 0.91736 0.97479 0.95742 1.20916 1.04671 0.95119 1.03634 1.21225 0.94317 0.99091 0.93522 1.21213 1.02951 0.97148 1.05406 1.17659 0.90367 0.90344 0.91366 1.19670 1.03655 1.30528 0.97011 0.92516 1.27073 1.01109 0.91986 0.97016 1.69655 1.30746 1.35797 1.11096 0.85445 0.78668 0.80106 0.76645 1.17894 1.16683 1.20248 0.90244 0.88599 0.90703 0.85715 0.91389 0.86487 0.81457 0.82197 0.83449 0.84389 0.84687 0.83813 0.84633 0.88061 0.89453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.59 9.13 127.77 1.17 2.76 16 2 N -0.61 -20.71 2.87 -850.64 -2.44 -23.16 16 3 C 0.12 3.51 5.46 86.38 0.47 3.98 16 4 C -0.63 -15.41 6.13 71.98 0.44 -14.97 16 5 S 2.44 53.16 5.36 -56.49 -0.30 52.86 16 6 C -0.64 -8.02 10.62 113.37 1.20 -6.82 16 7 O -0.97 -24.30 18.10 -127.37 -2.30 -26.61 16 8 O -0.99 -32.45 18.10 -127.37 -2.31 -34.76 16 9 C 0.57 26.32 6.70 86.67 0.58 26.90 16 10 O -0.59 -32.91 14.84 -4.05 -0.06 -32.97 16 11 C -0.26 -11.57 4.89 -19.70 -0.10 -11.67 16 12 C -0.04 -1.51 7.64 22.50 0.17 -1.34 16 13 C -0.22 -7.25 10.03 22.41 0.22 -7.02 16 14 C -0.06 -2.27 10.01 22.26 0.22 -2.05 16 15 C -0.25 -11.08 7.13 22.72 0.16 -10.92 16 16 C 0.11 5.40 5.05 -21.11 -0.11 5.29 16 17 C -0.48 -27.86 8.84 23.41 0.21 -27.65 16 18 H 0.06 3.82 6.39 -2.91 -0.02 3.80 16 19 C 0.04 2.31 5.44 85.37 0.46 2.77 16 20 N -0.85 -47.13 13.92 21.88 0.30 -46.83 16 21 Si 0.97 40.93 24.54 68.60 1.68 42.61 16 22 H -0.25 -10.07 6.66 99.48 0.66 -9.40 16 23 H -0.24 -10.07 6.90 99.48 0.69 -9.39 16 24 H -0.28 -10.87 7.11 99.48 0.71 -10.17 16 25 H 0.08 1.46 7.63 -2.39 -0.02 1.45 16 26 H 0.10 1.60 8.10 -2.39 -0.02 1.58 16 27 H 0.07 2.01 5.72 -2.38 -0.01 2.00 16 28 H 0.12 2.66 8.07 -2.39 -0.02 2.64 16 29 H 0.07 2.42 7.36 -2.39 -0.02 2.40 16 30 H 0.12 3.55 8.14 -2.40 -0.02 3.53 16 31 H 0.17 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.16 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.15 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.14 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.14 3.80 6.74 -2.91 -0.02 3.78 16 36 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 37 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 38 H 0.10 4.53 4.94 -2.91 -0.01 4.52 16 39 H 0.29 14.54 8.29 -92.70 -0.77 13.78 16 Total: -1.00 -85.62 335.55 0.69 -84.93 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: 1.00 Total: 24.66 kcal Atomic # 6 Polarization: -45.85 SS G_CDS: 5.12 Total: -40.73 kcal Atomic # 7 Polarization: -67.84 SS G_CDS: -2.14 Total: -69.98 kcal Atomic # 8 Polarization: -89.67 SS G_CDS: -4.67 Total: -94.34 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 1.68 Total: 42.61 kcal Atomic # 16 Polarization: 53.16 SS G_CDS: -0.30 Total: 52.86 kcal Total: -85.62 0.69 -84.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865146380.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.974 kcal (2) G-P(sol) polarization free energy of solvation -85.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds