Wall clock time and date at job start Fri Apr 10 2020 14:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 114.00272 * 2 1 4 4 C 1.50699 * 109.47398 * 180.02562 * 3 2 1 5 5 C 1.38352 * 119.85814 * 0.27312 * 4 3 2 6 6 C 1.37930 * 120.17586 * 180.27641 * 5 4 3 7 7 C 1.39651 * 119.89716 * 359.72666 * 6 5 4 8 8 C 1.47740 * 120.13462 * 180.02562 * 7 6 5 9 9 O 1.21468 * 119.99791 * 179.97438 * 8 7 6 10 10 O 1.34705 * 120.00033 * 359.97438 * 8 7 6 11 11 C 1.45199 * 117.00181 * 180.02562 * 10 8 7 12 12 C 1.50697 * 109.47653 * 179.97438 * 11 10 8 13 13 O 1.21296 * 119.99610 * 359.97438 * 12 11 10 14 14 N 1.34773 * 120.00322 * 180.02562 * 12 11 10 15 15 C 1.37095 * 120.00020 * 180.02562 * 14 12 11 16 16 H 1.07999 * 120.00271 * 359.97438 * 15 14 12 17 17 C 1.38950 * 119.99755 * 179.97438 * 15 14 12 18 18 N 1.31413 * 119.99437 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 120.00374 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.46996 * 89.99773 * 19 17 15 21 21 H 1.48497 * 109.47444 * 210.00097 * 19 17 15 22 22 H 1.48503 * 109.47026 * 330.00073 * 19 17 15 23 23 C 1.39580 * 119.72995 * 359.97438 * 7 6 5 24 24 C 1.38198 * 119.81695 * 0.02562 * 23 7 6 25 25 F 1.35104 * 119.95219 * 180.02562 * 24 23 7 26 26 H 1.08998 * 109.47375 * 60.00090 * 1 2 3 27 27 H 1.09003 * 109.47318 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47124 * 300.00031 * 1 2 3 29 29 H 1.09005 * 109.46987 * 59.99920 * 3 2 1 30 30 H 1.09004 * 109.46708 * 300.00143 * 3 2 1 31 31 H 1.07997 * 119.91245 * 0.02562 * 5 4 3 32 32 H 1.07996 * 120.05343 * 179.70655 * 6 5 4 33 33 H 1.08998 * 109.46762 * 300.00389 * 11 10 8 34 34 H 1.09002 * 109.47008 * 59.99401 * 11 10 8 35 35 H 0.96998 * 119.99797 * 359.97438 * 14 12 11 36 36 H 0.97002 * 119.99912 * 180.02562 * 18 17 15 37 37 H 1.07991 * 120.09370 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.1044 -0.0640 -0.0068 6 6 5.4788 -0.1806 -0.0017 7 6 6.2747 0.9669 0.0040 8 6 7.7473 0.8482 0.0090 9 8 8.4372 1.8479 0.0134 10 8 8.3249 -0.3688 0.0085 11 6 9.7763 -0.4096 0.0141 12 6 10.2386 -1.8439 0.0133 13 8 9.4248 -2.7434 0.0090 14 7 11.5562 -2.1273 0.0185 15 6 11.9767 -3.4322 0.0173 16 1 11.2521 -4.2331 0.0126 17 6 13.3351 -3.7243 0.0221 18 7 13.7381 -4.9751 0.0214 19 14 14.5884 -2.3392 0.0294 20 1 14.9149 -1.9747 1.4315 21 1 15.8223 -2.7843 -0.6666 22 1 14.0241 -1.1574 -0.6707 23 6 5.6732 2.2265 0.0039 24 6 4.2951 2.3299 -0.0012 25 9 3.7101 3.5477 -0.0019 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.4887 -0.9513 -0.0116 32 1 5.9387 -1.1577 -0.0018 33 1 10.1573 0.0958 -0.8732 34 1 10.1504 0.0919 0.9066 35 1 12.2069 -1.4080 0.0223 36 1 14.6864 -5.1791 0.0251 37 1 6.2830 3.1177 0.0079 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869864247.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:33:51 Heat of formation + Delta-G solvation = -175.525624 kcal Electronic energy + Delta-G solvation = -24179.984588 eV Core-core repulsion = 20030.785622 eV Total energy + Delta-G solvation = -4149.198966 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.105 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.28622 -40.66409 -39.38651 -38.37917 -37.83456 -36.23688 -34.07681 -32.72712 -31.81044 -30.98995 -28.99786 -27.82880 -26.29225 -24.55558 -23.13599 -22.97980 -20.97850 -19.67183 -18.69047 -18.49220 -17.44306 -16.92679 -16.63506 -16.42415 -16.35224 -16.28982 -15.81943 -15.76565 -15.47164 -14.93663 -14.60643 -14.25184 -13.96014 -13.55551 -13.40850 -13.40226 -12.96544 -12.66629 -12.36106 -12.24132 -12.19268 -12.16690 -11.74110 -11.53773 -11.27342 -10.66313 -10.64535 -10.58113 -10.36169 -10.05919 -9.68659 -9.34323 -9.05042 -8.68862 -8.30384 -6.40066 -3.93030 0.24734 0.84038 2.29556 2.44311 2.98318 3.03020 3.11456 3.11961 3.33083 3.54118 3.86243 4.03073 4.14868 4.37513 4.45945 4.68107 4.77987 4.80652 4.82326 4.89947 4.97188 5.00670 5.10137 5.23483 5.27296 5.41489 5.52224 5.60149 5.66825 5.75662 5.88941 5.97173 6.38421 6.42646 6.61401 7.43235 7.68622 7.99650 8.46510 8.82645 9.28807 9.63937 10.72125 Molecular weight = 311.10amu Principal moments of inertia in cm(-1) A = 0.027026 B = 0.002417 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.774943 B =11583.305460 C =12593.317490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.385 6.385 3 C 0.102 3.898 4 C -0.093 4.093 5 C -0.082 4.082 6 C -0.064 4.064 7 C -0.092 4.092 8 C 0.507 3.493 9 O -0.507 6.507 10 O -0.317 6.317 11 C 0.059 3.941 12 C 0.448 3.552 13 O -0.557 6.557 14 N -0.579 5.579 15 C -0.308 4.308 16 H 0.123 0.877 17 C 0.045 3.955 18 N -0.874 5.874 19 Si 0.879 3.121 20 H -0.269 1.269 21 H -0.274 1.274 22 H -0.268 1.268 23 C -0.089 4.089 24 C 0.088 3.912 25 F -0.134 7.134 26 H 0.044 0.956 27 H 0.091 0.909 28 H 0.044 0.956 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.153 0.847 32 H 0.156 0.844 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.373 0.627 36 H 0.276 0.724 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.901 15.612 -0.021 26.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.026 3.974 4 C -0.095 4.095 5 C -0.100 4.100 6 C -0.082 4.082 7 C -0.094 4.094 8 C 0.351 3.649 9 O -0.397 6.397 10 O -0.231 6.231 11 C -0.019 4.019 12 C 0.233 3.767 13 O -0.439 6.439 14 N -0.219 5.219 15 C -0.436 4.436 16 H 0.140 0.860 17 C -0.159 4.159 18 N -0.513 5.513 19 Si 0.705 3.295 20 H -0.194 1.194 21 H -0.199 1.199 22 H -0.193 1.193 23 C -0.108 4.108 24 C 0.069 3.931 25 F -0.113 7.113 26 H 0.062 0.938 27 H 0.109 0.891 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.171 0.829 32 H 0.174 0.826 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.206 0.794 36 H 0.086 0.914 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -21.947 14.974 -0.022 26.568 hybrid contribution 1.067 1.607 -0.009 1.929 sum -20.880 16.581 -0.031 26.663 Atomic orbital electron populations 1.22790 0.80144 1.03307 1.00230 1.87852 1.20295 1.26682 1.95539 1.21161 0.89020 0.85612 1.01625 1.19962 0.95078 0.92969 1.01441 1.20955 0.94209 0.97186 0.97604 1.21809 0.93366 0.99354 0.93700 1.18900 0.89840 0.93857 1.06784 1.21031 0.88917 0.81792 0.73121 1.90830 1.64751 1.38131 1.45978 1.86584 1.23381 1.30167 1.82971 1.22805 0.76725 0.98550 1.03822 1.19150 0.83467 0.88540 0.85584 1.90605 1.52543 1.47138 1.53568 1.42028 1.04810 1.08544 1.66493 1.19422 0.93307 0.82210 1.48684 0.85971 1.25044 0.97001 0.96615 0.97259 1.69615 1.16406 1.17021 1.48300 0.86677 0.81988 0.81725 0.79106 1.19393 1.19947 1.19342 1.21093 0.92653 0.98432 0.98615 1.17030 0.90448 0.79670 1.05930 1.91513 1.84276 1.41367 1.94106 0.93776 0.89081 0.93783 0.91112 0.91121 0.82937 0.82645 0.89190 0.89186 0.79366 0.91374 0.82967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.38 -3.17 9.17 -35.23 -0.32 -3.49 16 3 C 0.10 0.78 5.90 36.01 0.21 0.99 16 4 C -0.09 -0.90 5.89 -104.46 -0.62 -1.51 16 5 C -0.08 -0.82 9.36 -39.65 -0.37 -1.19 16 6 C -0.06 -0.74 9.62 -39.17 -0.38 -1.11 16 7 C -0.09 -1.18 5.87 -104.99 -0.62 -1.79 16 8 C 0.51 7.82 7.90 34.61 0.27 8.09 16 9 O -0.51 -8.47 16.14 -19.24 -0.31 -8.78 16 10 O -0.32 -5.54 9.01 -47.18 -0.42 -5.96 16 11 C 0.06 1.03 5.95 36.00 0.21 1.24 16 12 C 0.45 10.17 7.86 -10.99 -0.09 10.08 16 13 O -0.56 -14.94 16.08 -14.12 -0.23 -15.17 16 14 N -0.58 -13.56 5.09 -10.97 -0.06 -13.61 16 15 C -0.31 -8.53 10.16 -14.93 -0.15 -8.68 16 16 H 0.12 3.85 7.39 -52.49 -0.39 3.47 16 17 C 0.04 1.20 5.50 -17.47 -0.10 1.11 16 18 N -0.87 -24.96 13.96 55.50 0.77 -24.19 16 19 Si 0.88 18.91 27.74 -169.99 -4.71 14.19 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 22 H -0.27 -5.25 6.52 56.52 0.37 -4.89 16 23 C -0.09 -1.00 9.57 -39.10 -0.37 -1.38 16 24 C 0.09 0.90 7.24 -39.48 -0.29 0.62 16 25 F -0.13 -1.33 16.79 2.25 0.04 -1.30 16 26 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 27 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.15 1.37 6.99 -52.49 -0.37 1.01 16 32 H 0.16 1.85 7.61 -52.49 -0.40 1.45 16 33 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.37 7.60 5.76 -40.82 -0.24 7.36 16 36 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.15 1.63 7.65 -52.49 -0.40 1.23 16 LS Contribution 337.20 15.07 5.08 5.08 Total: -1.00 -33.00 337.20 -5.24 -38.24 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -3.92 Total: 7.24 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: -1.16 Total: 7.75 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.72 Total: -37.80 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -1.29 Total: -33.41 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -4.71 Total: 14.19 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.00 -5.24 -38.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869864247.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.289 kcal (2) G-P(sol) polarization free energy of solvation -32.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds