Wall clock time and date at job start Fri Apr 10 2020 14:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 114.00272 * 2 1 4 4 C 1.50699 * 109.47398 * 180.02562 * 3 2 1 5 5 C 1.38352 * 119.85814 * 0.27312 * 4 3 2 6 6 C 1.37930 * 120.17586 * 180.27641 * 5 4 3 7 7 C 1.39651 * 119.89716 * 359.72666 * 6 5 4 8 8 C 1.47740 * 120.13462 * 180.02562 * 7 6 5 9 9 O 1.21468 * 119.99791 * 179.97438 * 8 7 6 10 10 O 1.34705 * 120.00033 * 359.97438 * 8 7 6 11 11 C 1.45199 * 117.00181 * 180.02562 * 10 8 7 12 12 C 1.50697 * 109.47653 * 179.97438 * 11 10 8 13 13 O 1.21296 * 119.99610 * 359.97438 * 12 11 10 14 14 N 1.34773 * 120.00322 * 180.02562 * 12 11 10 15 15 C 1.37095 * 120.00020 * 180.02562 * 14 12 11 16 16 H 1.07999 * 120.00271 * 359.97438 * 15 14 12 17 17 C 1.38950 * 119.99755 * 179.97438 * 15 14 12 18 18 N 1.31413 * 119.99437 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 120.00374 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.46996 * 89.99773 * 19 17 15 21 21 H 1.48497 * 109.47444 * 210.00097 * 19 17 15 22 22 H 1.48503 * 109.47026 * 330.00073 * 19 17 15 23 23 C 1.39580 * 119.72995 * 359.97438 * 7 6 5 24 24 C 1.38198 * 119.81695 * 0.02562 * 23 7 6 25 25 F 1.35104 * 119.95219 * 180.02562 * 24 23 7 26 26 H 1.08998 * 109.47375 * 60.00090 * 1 2 3 27 27 H 1.09003 * 109.47318 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47124 * 300.00031 * 1 2 3 29 29 H 1.09005 * 109.46987 * 59.99920 * 3 2 1 30 30 H 1.09004 * 109.46708 * 300.00143 * 3 2 1 31 31 H 1.07997 * 119.91245 * 0.02562 * 5 4 3 32 32 H 1.07996 * 120.05343 * 179.70655 * 6 5 4 33 33 H 1.08998 * 109.46762 * 300.00389 * 11 10 8 34 34 H 1.09002 * 109.47008 * 59.99401 * 11 10 8 35 35 H 0.96998 * 119.99797 * 359.97438 * 14 12 11 36 36 H 0.97002 * 119.99912 * 180.02562 * 18 17 15 37 37 H 1.07991 * 120.09370 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.1044 -0.0640 -0.0068 6 6 5.4788 -0.1806 -0.0017 7 6 6.2747 0.9669 0.0040 8 6 7.7473 0.8482 0.0090 9 8 8.4372 1.8479 0.0134 10 8 8.3249 -0.3688 0.0085 11 6 9.7763 -0.4096 0.0141 12 6 10.2386 -1.8439 0.0133 13 8 9.4248 -2.7434 0.0090 14 7 11.5562 -2.1273 0.0185 15 6 11.9767 -3.4322 0.0173 16 1 11.2521 -4.2331 0.0126 17 6 13.3351 -3.7243 0.0221 18 7 13.7381 -4.9751 0.0214 19 14 14.5884 -2.3392 0.0294 20 1 14.9149 -1.9747 1.4315 21 1 15.8223 -2.7843 -0.6666 22 1 14.0241 -1.1574 -0.6707 23 6 5.6732 2.2265 0.0039 24 6 4.2951 2.3299 -0.0012 25 9 3.7101 3.5477 -0.0019 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.4887 -0.9513 -0.0116 32 1 5.9387 -1.1577 -0.0018 33 1 10.1573 0.0958 -0.8732 34 1 10.1504 0.0919 0.9066 35 1 12.2069 -1.4080 0.0223 36 1 14.6864 -5.1791 0.0251 37 1 6.2830 3.1177 0.0079 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869864247.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:33:51 Heat of formation + Delta-G solvation = -197.127297 kcal Electronic energy + Delta-G solvation = -24180.921307 eV Core-core repulsion = 20030.785622 eV Total energy + Delta-G solvation = -4150.135685 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.105 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.08122 -41.86156 -40.45788 -39.94042 -38.55193 -37.56042 -36.08457 -33.87214 -33.53679 -31.85441 -30.39600 -28.64778 -27.00042 -26.29728 -24.10173 -23.83873 -22.01805 -21.54760 -20.53843 -19.63515 -18.45449 -17.81921 -17.80433 -17.67671 -17.21985 -17.19154 -17.00834 -16.60383 -16.48696 -16.44843 -15.83832 -15.50134 -15.31880 -14.79816 -14.51622 -14.24743 -14.19810 -14.15331 -13.87472 -13.77685 -13.05487 -12.98142 -12.88084 -12.54344 -12.45741 -12.16536 -12.00629 -11.92303 -11.82160 -11.58633 -10.89127 -10.61394 -10.34030 -10.16176 -9.87719 -8.45795 -6.08882 -0.67472 -0.00278 1.18900 1.22637 1.31084 1.33993 1.44930 1.75612 2.20475 2.41463 2.55739 2.72950 3.07181 3.08615 3.39752 3.61017 3.69680 3.87029 3.94323 3.99796 4.09388 4.13056 4.29900 4.32530 4.50115 4.58232 4.60608 4.72631 4.91271 4.94004 5.03501 5.11502 5.16152 5.47348 5.58931 5.85464 6.12122 6.41499 6.53215 6.77285 7.25619 7.77165 8.70698 Molecular weight = 311.10amu Principal moments of inertia in cm(-1) A = 0.027026 B = 0.002417 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.774943 B =11583.305460 C =12593.317490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.100 3.900 4 C -0.084 4.084 5 C -0.080 4.080 6 C -0.066 4.066 7 C -0.110 4.110 8 C 0.512 3.488 9 O -0.521 6.521 10 O -0.335 6.335 11 C 0.067 3.933 12 C 0.449 3.551 13 O -0.606 6.606 14 N -0.576 5.576 15 C -0.332 4.332 16 H 0.062 0.938 17 C -0.009 4.009 18 N -0.925 5.925 19 Si 0.961 3.039 20 H -0.255 1.255 21 H -0.272 1.272 22 H -0.231 1.231 23 C -0.086 4.086 24 C 0.091 3.909 25 F -0.130 7.130 26 H 0.054 0.946 27 H 0.098 0.902 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.163 0.837 32 H 0.146 0.854 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.393 0.607 36 H 0.282 0.718 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.366 18.847 -0.050 29.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.326 6.326 3 C 0.024 3.976 4 C -0.085 4.085 5 C -0.098 4.098 6 C -0.084 4.084 7 C -0.111 4.111 8 C 0.358 3.642 9 O -0.412 6.412 10 O -0.250 6.250 11 C -0.010 4.010 12 C 0.236 3.764 13 O -0.491 6.491 14 N -0.218 5.218 15 C -0.461 4.461 16 H 0.080 0.920 17 C -0.209 4.209 18 N -0.565 5.565 19 Si 0.780 3.220 20 H -0.179 1.179 21 H -0.197 1.197 22 H -0.154 1.154 23 C -0.105 4.105 24 C 0.071 3.929 25 F -0.108 7.108 26 H 0.073 0.927 27 H 0.116 0.884 28 H 0.073 0.927 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.180 0.820 32 H 0.163 0.837 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.229 0.771 36 H 0.092 0.908 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -22.434 18.236 -0.053 28.911 hybrid contribution 1.006 0.527 0.003 1.136 sum -21.428 18.763 -0.049 28.482 Atomic orbital electron populations 1.22971 0.78608 1.04189 1.01264 1.87816 1.22005 1.26992 1.95744 1.21267 0.87466 0.85859 1.02962 1.20222 0.96466 0.92383 0.99427 1.21029 0.93496 0.97947 0.97303 1.21759 0.94057 0.98675 0.93934 1.18789 0.88351 0.94804 1.09154 1.21364 0.89764 0.80790 0.72328 1.90812 1.65233 1.38166 1.46954 1.86580 1.23252 1.31710 1.83504 1.22677 0.77347 0.94327 1.06617 1.20120 0.82736 0.90547 0.82980 1.90583 1.53864 1.49555 1.55083 1.41803 1.05710 1.07425 1.66824 1.18999 0.93043 0.82998 1.51058 0.92029 1.26094 0.99069 1.00067 0.95622 1.69782 1.17464 1.20147 1.49069 0.85421 0.77912 0.78454 0.80167 1.17934 1.19732 1.15433 1.21122 0.93230 0.97934 0.98181 1.16973 0.90084 0.80003 1.05815 1.91527 1.84101 1.41143 1.94057 0.92728 0.88398 0.92740 0.89652 0.89657 0.81993 0.83651 0.86303 0.86217 0.77069 0.90829 0.82509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.45 16 2 O -0.41 -5.86 9.17 -148.98 -1.37 -7.23 16 3 C 0.10 1.28 5.90 71.24 0.42 1.70 16 4 C -0.08 -1.45 5.89 -19.76 -0.12 -1.56 16 5 C -0.08 -1.51 9.36 22.22 0.21 -1.30 16 6 C -0.07 -1.50 9.62 22.54 0.22 -1.28 16 7 C -0.11 -2.71 5.87 -20.10 -0.12 -2.83 16 8 C 0.51 15.28 7.90 70.33 0.56 15.83 16 9 O -0.52 -16.50 16.14 19.94 0.32 -16.18 16 10 O -0.34 -11.53 9.01 -49.76 -0.45 -11.98 16 11 C 0.07 2.24 5.95 71.23 0.42 2.66 16 12 C 0.45 20.49 7.86 87.66 0.69 21.18 16 13 O -0.61 -33.88 16.08 15.72 0.25 -33.63 16 14 N -0.58 -26.80 5.09 -306.99 -1.56 -28.36 16 15 C -0.33 -19.09 10.16 84.04 0.85 -18.23 16 16 H 0.06 4.20 7.39 -2.91 -0.02 4.18 16 17 C -0.01 -0.46 5.50 84.93 0.47 0.00 16 18 N -0.93 -54.48 13.96 21.66 0.30 -54.18 16 19 Si 0.96 37.73 27.74 68.60 1.90 39.63 16 20 H -0.26 -9.49 7.11 99.48 0.71 -8.79 16 21 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 22 H -0.23 -7.64 6.52 99.48 0.65 -6.99 16 23 C -0.09 -1.81 9.57 22.58 0.22 -1.59 16 24 C 0.09 1.68 7.24 22.34 0.16 1.84 16 25 F -0.13 -2.28 16.79 44.97 0.75 -1.52 16 26 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 27 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.16 2.75 6.99 -2.91 -0.02 2.73 16 32 H 0.15 3.58 7.61 -2.91 -0.02 3.56 16 33 H 0.12 3.32 8.14 -2.39 -0.02 3.30 16 34 H 0.12 3.32 8.14 -2.39 -0.02 3.30 16 35 H 0.39 14.98 5.76 -92.71 -0.53 14.45 16 36 H 0.28 15.12 8.31 -92.71 -0.77 14.35 16 37 H 0.16 3.12 7.65 -2.92 -0.02 3.10 16 Total: -1.00 -75.28 337.20 5.92 -69.36 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: 0.54 Total: 26.21 kcal Atomic # 6 Polarization: 12.64 SS G_CDS: 5.23 Total: 17.87 kcal Atomic # 7 Polarization: -81.28 SS G_CDS: -1.26 Total: -82.54 kcal Atomic # 8 Polarization: -67.78 SS G_CDS: -1.24 Total: -69.02 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.75 Total: -1.52 kcal Atomic # 14 Polarization: 37.73 SS G_CDS: 1.90 Total: 39.63 kcal Total: -75.28 5.92 -69.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869864247.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.762 kcal (2) G-P(sol) polarization free energy of solvation -75.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds