Wall clock time and date at job start Fri Apr 10 2020 14:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35903 * 116.99564 * 2 1 4 4 C 1.38768 * 120.17371 * 359.97438 * 3 2 1 5 5 C 1.37829 * 119.70560 * 180.13563 * 4 3 2 6 6 C 1.38957 * 120.63345 * 359.97438 * 5 4 3 7 7 C 1.37659 * 119.73053 * 359.85058 * 6 5 4 8 8 C 1.38277 * 120.18423 * 180.02562 * 3 2 1 9 9 C 1.50639 * 122.55328 * 180.37969 * 7 6 5 10 10 C 1.52718 * 110.60040 * 342.45019 * 9 7 6 11 11 H 1.09004 * 109.68097 * 291.31673 * 10 9 7 12 12 N 1.46502 * 109.68321 * 170.76406 * 10 9 7 13 13 S 1.65592 * 120.00307 * 96.07890 * 12 10 9 14 14 O 1.42099 * 106.40361 * 178.53664 * 13 12 10 15 15 O 1.42092 * 106.40521 * 311.46005 * 13 12 10 16 16 C 1.76206 * 107.21934 * 64.99975 * 13 12 10 17 17 H 1.08000 * 119.99833 * 0.02562 * 16 13 12 18 18 C 1.37880 * 119.99700 * 179.97438 * 16 13 12 19 19 N 1.31509 * 120.00483 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 119.99506 * 179.97438 * 18 16 13 21 21 H 1.48498 * 109.47245 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46742 * 120.00128 * 20 18 16 23 23 H 1.48497 * 109.47550 * 240.00024 * 20 18 16 24 24 C 1.53326 * 108.37858 * 51.03709 * 10 9 7 25 25 C 1.50651 * 117.68651 * 179.77141 * 6 5 4 26 26 H 1.09004 * 109.46433 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47548 * 300.00269 * 1 2 3 28 28 H 1.09002 * 109.47273 * 60.00877 * 1 2 3 29 29 H 1.08000 * 120.14214 * 0.11066 * 4 3 2 30 30 H 1.08007 * 119.68065 * 179.97438 * 5 4 3 31 31 H 1.07998 * 119.70868 * 359.90511 * 8 3 2 32 32 H 1.09003 * 109.25009 * 222.15612 * 9 7 6 33 33 H 1.08996 * 109.25082 * 102.74279 * 9 7 6 34 34 H 0.97001 * 119.99635 * 276.07295 * 12 10 9 35 35 H 0.97001 * 119.99919 * 180.02562 * 19 18 16 36 36 H 1.09004 * 109.68541 * 170.34139 * 24 10 9 37 37 H 1.08998 * 109.71490 * 49.79991 * 24 10 9 38 38 H 1.09002 * 109.25660 * 42.14739 * 25 6 5 39 39 H 1.08998 * 109.25251 * 282.67600 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2936 2.3770 -0.0005 5 6 1.9292 3.5999 -0.0034 6 6 3.3167 3.6768 -0.0052 7 6 4.0644 2.5210 -0.0010 8 6 3.4265 1.2879 -0.0005 9 6 5.5707 2.5301 0.0058 10 6 6.1017 3.8960 -0.4238 11 1 5.8854 4.0585 -1.4797 12 7 7.5485 3.9554 -0.2010 13 16 8.5919 3.6302 -1.4451 14 8 9.9029 3.8033 -0.9250 15 8 8.1446 2.4187 -2.0377 16 6 8.3672 4.8894 -2.6570 17 1 7.6447 5.6750 -2.4919 18 6 9.1146 4.8724 -3.8156 19 7 9.9947 3.9161 -4.0164 20 14 8.8758 6.2069 -5.1006 21 1 7.8335 7.1583 -4.6385 22 1 10.1547 6.9342 -5.3024 23 1 8.4500 5.5896 -6.3823 24 6 5.4050 4.9720 0.4175 25 6 3.9418 5.0474 -0.0135 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8901 29 1 0.2148 2.3263 0.0008 30 1 1.3433 4.5073 -0.0042 31 1 4.0131 0.3811 0.0006 32 1 5.9379 1.7690 -0.6827 33 1 5.9269 2.3060 1.0113 34 1 7.8952 4.1853 0.6752 35 1 10.5207 3.9043 -4.8313 36 1 5.8865 5.9359 0.2526 37 1 5.4636 4.7082 1.4735 38 1 3.3975 5.6950 0.6738 39 1 3.8845 5.4624 -1.0198 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192995741.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:32:56 Heat of formation + Delta-G solvation = -120.175841 kcal Electronic energy + Delta-G solvation = -23699.419899 eV Core-core repulsion = 20118.834256 eV Total energy + Delta-G solvation = -3580.585643 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.102 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.42347 -38.67282 -36.05541 -35.10852 -33.91122 -33.11204 -32.73677 -31.95647 -29.25357 -28.13743 -26.84032 -26.11447 -23.37643 -22.18640 -22.03327 -19.65846 -18.88097 -17.68514 -17.36476 -16.44282 -16.17153 -15.85384 -15.55789 -15.46961 -14.86019 -14.36031 -14.05972 -13.72845 -13.67594 -13.43569 -13.31315 -13.00014 -12.83050 -12.24456 -12.22408 -11.98923 -11.90055 -11.55252 -11.22535 -11.18571 -10.90815 -10.73207 -10.70370 -10.57651 -10.50079 -10.25424 -10.15270 -10.01005 -9.24160 -8.99690 -8.69200 -8.50409 -8.00322 -6.68455 -5.29914 1.36253 1.46041 2.37216 3.06588 3.15017 3.18988 3.21900 3.75008 4.07441 4.58619 4.66695 4.71667 4.85014 4.92305 4.95171 4.99501 5.05233 5.21589 5.24210 5.27835 5.30624 5.61114 5.67590 5.71459 5.73001 5.88144 5.96141 6.02439 6.07853 6.11509 6.30669 6.35792 6.42206 6.52083 6.56370 6.73130 6.86670 6.96816 7.34272 7.37331 7.93141 8.00931 8.91125 10.25765 Molecular weight = 311.10amu Principal moments of inertia in cm(-1) A = 0.019408 B = 0.003679 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.390104 B = 7609.060289 C = 7771.219898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.120 3.880 4 C -0.213 4.213 5 C -0.081 4.081 6 C -0.113 4.113 7 C -0.021 4.021 8 C -0.152 4.152 9 C -0.105 4.105 10 C 0.164 3.836 11 H 0.093 0.907 12 N -1.132 6.132 13 S 2.713 3.287 14 O -1.008 7.008 15 O -1.005 7.005 16 C -1.021 5.021 17 H 0.102 0.898 18 C 0.133 3.867 19 N -0.845 5.845 20 Si 0.919 3.081 21 H -0.262 1.262 22 H -0.271 1.271 23 H -0.271 1.271 24 C -0.126 4.126 25 C -0.074 4.074 26 H 0.097 0.903 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.130 0.870 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.402 0.598 35 H 0.290 0.710 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.197 -0.239 8.504 20.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.233 6.233 3 C 0.075 3.925 4 C -0.231 4.231 5 C -0.099 4.099 6 C -0.114 4.114 7 C -0.022 4.022 8 C -0.170 4.170 9 C -0.144 4.144 10 C 0.056 3.944 11 H 0.111 0.889 12 N -0.884 5.884 13 S 2.813 3.187 14 O -0.999 6.999 15 O -0.994 6.994 16 C -1.154 5.154 17 H 0.121 0.879 18 C -0.085 4.085 19 N -0.475 5.475 20 Si 0.743 3.257 21 H -0.186 1.186 22 H -0.196 1.196 23 H -0.196 1.196 24 C -0.165 4.165 25 C -0.112 4.112 26 H 0.115 0.885 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.142 0.858 30 H 0.140 0.860 31 H 0.148 0.852 32 H 0.114 0.886 33 H 0.100 0.900 34 H 0.232 0.768 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.438 -1.331 8.194 19.313 hybrid contribution -0.616 1.367 -0.570 1.604 sum -18.054 0.036 7.623 19.598 Atomic orbital electron populations 1.23004 0.78781 1.03646 1.01166 1.86070 1.21051 1.27154 1.89027 1.18842 0.92298 0.83992 0.97330 1.21079 0.99616 0.92446 1.10002 1.20895 0.93861 0.96935 0.98259 1.19585 0.93054 0.95010 1.03713 1.19445 0.95589 0.91359 0.95788 1.20417 0.91295 0.98476 1.06833 1.21150 0.89756 1.00134 1.03316 1.20465 0.80278 0.93223 1.00468 0.88852 1.56086 1.15804 1.89043 1.27447 1.00462 0.70995 0.75002 0.72235 1.93372 1.37777 1.88101 1.80633 1.93362 1.81873 1.47393 1.76811 1.30597 1.33699 1.30838 1.20256 0.87925 1.24738 0.90988 0.95315 0.97450 1.69904 1.19528 1.30404 1.27631 0.86158 0.79093 0.80687 0.79777 1.18601 1.19649 1.19627 1.21899 0.94654 0.99934 1.00045 1.20406 0.95379 0.93088 1.02327 0.88484 0.92883 0.92777 0.85842 0.86021 0.85162 0.88609 0.89974 0.76778 0.89972 0.90347 0.91387 0.90818 0.90293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.82 101.05 0.99 1.22 16 2 O -0.32 -3.93 10.50 -19.43 -0.20 -4.13 16 3 C 0.12 1.59 6.67 -39.37 -0.26 1.32 16 4 C -0.21 -2.43 9.04 -39.54 -0.36 -2.79 16 5 C -0.08 -0.93 9.60 -39.46 -0.38 -1.31 16 6 C -0.11 -1.48 5.74 -104.59 -0.60 -2.08 16 7 C -0.02 -0.31 5.73 -104.64 -0.60 -0.91 16 8 C -0.15 -2.18 9.54 -39.35 -0.38 -2.55 16 9 C -0.10 -1.67 5.28 -28.06 -0.15 -1.82 16 10 C 0.16 2.76 2.68 -67.91 -0.18 2.58 16 11 H 0.09 1.72 7.83 -51.93 -0.41 1.31 16 12 N -1.13 -21.64 5.49 -4.87 -0.03 -21.67 16 13 S 2.71 70.73 4.93 -107.50 -0.53 70.20 16 14 O -1.01 -29.37 18.02 -57.18 -1.03 -30.40 16 15 O -1.00 -28.74 17.57 -57.18 -1.00 -29.75 16 16 C -1.02 -27.71 9.60 30.60 0.29 -27.42 16 17 H 0.10 2.54 7.81 -52.49 -0.41 2.13 16 18 C 0.13 3.69 5.46 -17.82 -0.10 3.60 16 19 N -0.84 -24.84 13.19 55.43 0.73 -24.11 16 20 Si 0.92 20.48 29.54 -169.99 -5.02 15.46 16 21 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 22 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 23 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 24 C -0.13 -1.65 5.52 -26.70 -0.15 -1.79 16 25 C -0.07 -0.87 5.67 -28.05 -0.16 -1.03 16 26 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.35 7.67 -51.93 -0.40 -0.05 16 28 H 0.05 0.37 7.67 -51.93 -0.40 -0.03 16 29 H 0.12 1.09 6.33 -52.49 -0.33 0.76 16 30 H 0.12 1.09 8.05 -52.48 -0.42 0.66 16 31 H 0.13 1.80 8.05 -52.49 -0.42 1.38 16 32 H 0.10 1.72 7.91 -51.93 -0.41 1.31 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.40 6.56 8.84 -34.46 -0.30 6.25 16 35 H 0.29 7.64 8.31 -40.82 -0.34 7.31 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 38 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 338.18 15.07 5.10 5.10 Total: -1.00 -35.57 338.18 -9.19 -44.75 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -5.17 Total: 7.52 kcal Atomic # 6 Polarization: -30.95 SS G_CDS: -2.02 Total: -32.98 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: 0.70 Total: -45.78 kcal Atomic # 8 Polarization: -62.04 SS G_CDS: -2.24 Total: -64.28 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: 70.73 SS G_CDS: -0.53 Total: 70.20 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.57 -9.19 -44.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192995741.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.421 kcal (2) G-P(sol) polarization free energy of solvation -35.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds