Wall clock time and date at job start Fri Apr 10 2020 14:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35903 * 116.99564 * 2 1 4 4 C 1.38768 * 120.17371 * 359.97438 * 3 2 1 5 5 C 1.37829 * 119.70560 * 180.13563 * 4 3 2 6 6 C 1.38957 * 120.63345 * 359.97438 * 5 4 3 7 7 C 1.37659 * 119.73053 * 359.85058 * 6 5 4 8 8 C 1.38277 * 120.18423 * 180.02562 * 3 2 1 9 9 C 1.50639 * 122.55328 * 180.37969 * 7 6 5 10 10 C 1.52718 * 110.60040 * 342.45019 * 9 7 6 11 11 H 1.09004 * 109.68097 * 291.31673 * 10 9 7 12 12 N 1.46502 * 109.68321 * 170.76406 * 10 9 7 13 13 S 1.65592 * 120.00307 * 96.07890 * 12 10 9 14 14 O 1.42099 * 106.40361 * 178.53664 * 13 12 10 15 15 O 1.42092 * 106.40521 * 311.46005 * 13 12 10 16 16 C 1.76206 * 107.21934 * 64.99975 * 13 12 10 17 17 H 1.08000 * 119.99833 * 0.02562 * 16 13 12 18 18 C 1.37880 * 119.99700 * 179.97438 * 16 13 12 19 19 N 1.31509 * 120.00483 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 119.99506 * 179.97438 * 18 16 13 21 21 H 1.48498 * 109.47245 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46742 * 120.00128 * 20 18 16 23 23 H 1.48497 * 109.47550 * 240.00024 * 20 18 16 24 24 C 1.53326 * 108.37858 * 51.03709 * 10 9 7 25 25 C 1.50651 * 117.68651 * 179.77141 * 6 5 4 26 26 H 1.09004 * 109.46433 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47548 * 300.00269 * 1 2 3 28 28 H 1.09002 * 109.47273 * 60.00877 * 1 2 3 29 29 H 1.08000 * 120.14214 * 0.11066 * 4 3 2 30 30 H 1.08007 * 119.68065 * 179.97438 * 5 4 3 31 31 H 1.07998 * 119.70868 * 359.90511 * 8 3 2 32 32 H 1.09003 * 109.25009 * 222.15612 * 9 7 6 33 33 H 1.08996 * 109.25082 * 102.74279 * 9 7 6 34 34 H 0.97001 * 119.99635 * 276.07295 * 12 10 9 35 35 H 0.97001 * 119.99919 * 180.02562 * 19 18 16 36 36 H 1.09004 * 109.68541 * 170.34139 * 24 10 9 37 37 H 1.08998 * 109.71490 * 49.79991 * 24 10 9 38 38 H 1.09002 * 109.25660 * 42.14739 * 25 6 5 39 39 H 1.08998 * 109.25251 * 282.67600 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2936 2.3770 -0.0005 5 6 1.9292 3.5999 -0.0034 6 6 3.3167 3.6768 -0.0052 7 6 4.0644 2.5210 -0.0010 8 6 3.4265 1.2879 -0.0005 9 6 5.5707 2.5301 0.0058 10 6 6.1017 3.8960 -0.4238 11 1 5.8854 4.0585 -1.4797 12 7 7.5485 3.9554 -0.2010 13 16 8.5919 3.6302 -1.4451 14 8 9.9029 3.8033 -0.9250 15 8 8.1446 2.4187 -2.0377 16 6 8.3672 4.8894 -2.6570 17 1 7.6447 5.6750 -2.4919 18 6 9.1146 4.8724 -3.8156 19 7 9.9947 3.9161 -4.0164 20 14 8.8758 6.2069 -5.1006 21 1 7.8335 7.1583 -4.6385 22 1 10.1547 6.9342 -5.3024 23 1 8.4500 5.5896 -6.3823 24 6 5.4050 4.9720 0.4175 25 6 3.9418 5.0474 -0.0135 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8901 29 1 0.2148 2.3263 0.0008 30 1 1.3433 4.5073 -0.0042 31 1 4.0131 0.3811 0.0006 32 1 5.9379 1.7690 -0.6827 33 1 5.9269 2.3060 1.0113 34 1 7.8952 4.1853 0.6752 35 1 10.5207 3.9043 -4.8313 36 1 5.8865 5.9359 0.2526 37 1 5.4636 4.7082 1.4735 38 1 3.3975 5.6950 0.6738 39 1 3.8845 5.4624 -1.0198 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192995741.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:32:55 Heat of formation + Delta-G solvation = -146.990141 kcal Electronic energy + Delta-G solvation = -23700.582654 eV Core-core repulsion = 20118.834256 eV Total energy + Delta-G solvation = -3581.748399 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.102 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.38472 -39.66561 -37.46181 -37.07311 -36.10981 -35.17797 -33.88086 -33.12833 -30.16749 -29.29255 -28.24947 -27.64844 -24.43512 -23.17900 -23.15754 -21.20062 -20.44581 -19.28510 -18.62780 -18.17879 -17.52211 -16.97611 -16.81745 -16.59271 -16.44537 -15.89137 -15.50963 -15.33162 -14.80086 -14.54475 -14.42927 -14.18733 -13.98067 -13.86054 -13.37469 -13.25080 -13.04722 -13.00917 -12.82135 -12.71947 -12.48667 -12.40202 -12.26431 -12.18853 -11.81898 -11.69182 -11.49812 -11.40636 -11.25382 -10.92240 -10.21929 -9.69525 -8.94398 -8.74273 -7.46641 0.37037 0.39573 0.49668 1.34429 1.35391 1.53033 2.21935 2.39834 2.59610 2.77869 2.97877 3.68502 3.78090 3.85202 3.91826 3.98345 4.13691 4.18358 4.29236 4.38484 4.42238 4.46820 4.54821 4.62443 4.68016 4.74105 4.74394 4.83805 4.96517 5.04814 5.13650 5.14751 5.25523 5.31625 5.41399 5.47862 5.51633 5.74554 5.90630 5.93521 6.44718 6.50838 6.79967 8.22525 Molecular weight = 311.10amu Principal moments of inertia in cm(-1) A = 0.019408 B = 0.003679 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.390104 B = 7609.060289 C = 7771.219898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.342 6.342 3 C 0.111 3.889 4 C -0.207 4.207 5 C -0.076 4.076 6 C -0.122 4.122 7 C -0.040 4.040 8 C -0.178 4.178 9 C -0.101 4.101 10 C 0.155 3.845 11 H 0.073 0.927 12 N -1.114 6.114 13 S 2.717 3.283 14 O -1.048 7.048 15 O -1.042 7.042 16 C -1.038 5.038 17 H 0.123 0.877 18 C 0.068 3.932 19 N -0.896 5.896 20 Si 0.990 3.010 21 H -0.243 1.243 22 H -0.260 1.260 23 H -0.261 1.261 24 C -0.119 4.119 25 C -0.071 4.071 26 H 0.115 0.885 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.155 0.845 30 H 0.157 0.843 31 H 0.117 0.883 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.416 0.584 35 H 0.298 0.702 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.108 0.892 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.382 2.355 8.827 23.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.256 6.256 3 C 0.066 3.934 4 C -0.226 4.226 5 C -0.094 4.094 6 C -0.122 4.122 7 C -0.041 4.041 8 C -0.197 4.197 9 C -0.140 4.140 10 C 0.048 3.952 11 H 0.091 0.909 12 N -0.872 5.872 13 S 2.818 3.182 14 O -1.038 7.038 15 O -1.032 7.032 16 C -1.171 5.171 17 H 0.141 0.859 18 C -0.144 4.144 19 N -0.527 5.527 20 Si 0.808 3.192 21 H -0.166 1.166 22 H -0.185 1.185 23 H -0.186 1.186 24 C -0.158 4.158 25 C -0.109 4.109 26 H 0.133 0.867 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.172 0.828 30 H 0.175 0.825 31 H 0.135 0.865 32 H 0.079 0.921 33 H 0.110 0.890 34 H 0.251 0.749 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.126 0.874 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -20.629 1.244 8.549 22.365 hybrid contribution 0.266 0.455 -0.597 0.796 sum -20.363 1.699 7.953 21.927 Atomic orbital electron populations 1.23334 0.76375 1.05429 1.02371 1.86044 1.23606 1.27067 1.88929 1.18966 0.91997 0.85158 0.97245 1.21447 1.01117 0.91655 1.08340 1.21277 0.93264 0.98278 0.96552 1.19824 0.94013 0.94918 1.03491 1.19345 0.94457 0.92419 0.97844 1.20455 0.92465 0.98168 1.08615 1.21010 0.91479 0.98621 1.02870 1.20719 0.78661 0.95392 1.00425 0.90892 1.55426 1.16431 1.88779 1.26560 0.99953 0.70757 0.74627 0.72825 1.93306 1.40655 1.88439 1.81380 1.93312 1.82355 1.49317 1.78172 1.30938 1.34131 1.31343 1.20733 0.85882 1.26040 0.90283 0.97956 1.00152 1.70004 1.20960 1.32793 1.28970 0.85104 0.79994 0.77493 0.76597 1.16556 1.18458 1.18577 1.21886 0.95346 0.98479 1.00089 1.20469 0.94254 0.92787 1.03366 0.86657 0.91338 0.91725 0.82779 0.82539 0.86526 0.92144 0.89031 0.74931 0.89201 0.89472 0.89752 0.87381 0.90055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.82 113.37 1.11 1.36 16 2 O -0.34 -8.17 10.50 -92.46 -0.97 -9.14 16 3 C 0.11 2.85 6.67 22.41 0.15 3.00 16 4 C -0.21 -4.12 9.04 22.30 0.20 -3.92 16 5 C -0.08 -1.46 9.60 22.35 0.21 -1.25 16 6 C -0.12 -2.93 5.74 -19.84 -0.11 -3.04 16 7 C -0.04 -1.17 5.73 -19.88 -0.11 -1.28 16 8 C -0.18 -5.31 9.54 22.42 0.21 -5.09 16 9 C -0.10 -3.35 5.28 29.74 0.16 -3.20 16 10 C 0.16 5.25 2.68 45.01 0.12 5.37 16 11 H 0.07 2.75 7.83 -2.39 -0.02 2.73 16 12 N -1.11 -43.36 5.49 -169.32 -0.93 -44.29 16 13 S 2.72 146.82 4.93 -56.49 -0.28 146.54 16 14 O -1.05 -63.32 18.02 -128.00 -2.31 -65.62 16 15 O -1.04 -62.87 17.57 -128.00 -2.25 -65.12 16 16 C -1.04 -56.88 9.60 67.74 0.65 -56.23 16 17 H 0.12 5.99 7.81 -2.91 -0.02 5.97 16 18 C 0.07 3.81 5.46 84.66 0.46 4.27 16 19 N -0.90 -54.04 13.19 21.45 0.28 -53.76 16 20 Si 0.99 41.19 29.54 68.60 2.03 43.22 16 21 H -0.24 -9.24 7.11 99.48 0.71 -8.54 16 22 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 23 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 24 C -0.12 -2.83 5.52 30.61 0.17 -2.66 16 25 C -0.07 -1.43 5.67 29.74 0.17 -1.26 16 26 H 0.12 1.05 8.14 -2.38 -0.02 1.03 16 27 H 0.07 0.69 7.67 -2.39 -0.02 0.67 16 28 H 0.06 0.71 7.67 -2.39 -0.02 0.69 16 29 H 0.15 2.05 6.33 -2.91 -0.02 2.03 16 30 H 0.16 1.92 8.05 -2.91 -0.02 1.90 16 31 H 0.12 3.58 8.05 -2.91 -0.02 3.56 16 32 H 0.06 2.38 7.91 -2.39 -0.02 2.36 16 33 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 34 H 0.42 13.62 8.84 -96.75 -0.86 12.76 16 35 H 0.30 16.11 8.31 -92.71 -0.77 15.34 16 36 H 0.09 1.94 8.14 -2.39 -0.02 1.93 16 37 H 0.08 1.74 8.10 -2.39 -0.02 1.73 16 38 H 0.11 1.48 8.12 -2.39 -0.02 1.46 16 39 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -80.54 338.18 -0.82 -81.36 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: 0.22 Total: 30.73 kcal Atomic # 6 Polarization: -67.32 SS G_CDS: 3.39 Total: -63.93 kcal Atomic # 7 Polarization: -97.40 SS G_CDS: -0.65 Total: -98.05 kcal Atomic # 8 Polarization: -134.35 SS G_CDS: -5.53 Total: -139.88 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Atomic # 16 Polarization: 146.82 SS G_CDS: -0.28 Total: 146.54 kcal Total: -80.54 -0.82 -81.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192995741.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.630 kcal (2) G-P(sol) polarization free energy of solvation -80.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds