Wall clock time and date at job start Fri Apr 10 2020 14:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35898 * 116.99813 * 2 1 4 4 C 1.38766 * 120.17545 * 0.04220 * 3 2 1 5 5 C 1.37833 * 119.71576 * 179.85825 * 4 3 2 6 6 C 1.38965 * 120.62206 * 359.96277 * 5 4 3 7 7 C 1.37702 * 119.76716 * 0.30516 * 6 5 4 8 8 C 1.38433 * 120.17702 * 179.97438 * 3 2 1 9 9 C 1.50645 * 122.55298 * 179.23991 * 7 6 5 10 10 C 1.52727 * 110.58562 * 18.09973 * 9 7 6 11 11 H 1.09003 * 109.68225 * 68.55751 * 10 9 7 12 12 N 1.46499 * 109.68357 * 189.07870 * 10 9 7 13 13 S 1.65600 * 119.99804 * 265.00193 * 12 10 9 14 14 O 1.42106 * 106.40202 * 178.53798 * 13 12 10 15 15 O 1.42099 * 106.40136 * 311.45480 * 13 12 10 16 16 C 1.76200 * 107.22086 * 64.99665 * 13 12 10 17 17 H 1.07996 * 119.99668 * 0.02562 * 16 13 12 18 18 C 1.37877 * 119.99694 * 179.97438 * 16 13 12 19 19 N 1.31509 * 120.00037 * 0.02562 * 18 16 13 20 20 Si 1.86804 * 119.99696 * 180.02562 * 18 16 13 21 21 H 1.48501 * 109.47142 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47064 * 120.00041 * 20 18 16 23 23 H 1.48491 * 109.47051 * 240.00204 * 20 18 16 24 24 C 1.53326 * 108.38331 * 308.80303 * 10 9 7 25 25 C 1.50649 * 117.69874 * 180.66223 * 6 5 4 26 26 H 1.09002 * 109.47054 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47358 * 299.99964 * 1 2 3 28 28 H 1.09002 * 109.46805 * 60.00364 * 1 2 3 29 29 H 1.07997 * 120.14009 * 359.85597 * 4 3 2 30 30 H 1.08001 * 119.68701 * 180.24948 * 5 4 3 31 31 H 1.08005 * 119.74244 * 0.03963 * 8 3 2 32 32 H 1.09004 * 109.25563 * 138.38630 * 9 7 6 33 33 H 1.09003 * 109.25333 * 257.84987 * 9 7 6 34 34 H 0.97004 * 119.99632 * 84.99345 * 12 10 9 35 35 H 0.97004 * 119.99681 * 179.97438 * 19 18 16 36 36 H 1.09001 * 109.67456 * 189.55653 * 24 10 9 37 37 H 1.09003 * 109.67366 * 310.05458 * 24 10 9 38 38 H 1.09004 * 109.24706 * 317.93645 * 25 6 5 39 39 H 1.08994 * 109.24896 * 77.35268 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2937 2.3770 0.0009 5 6 1.9292 3.6000 0.0038 6 6 3.3167 3.6767 0.0067 7 6 4.0653 2.5210 0.0003 8 6 3.4281 1.2876 0.0005 9 6 5.5717 2.5310 -0.0140 10 6 6.1038 3.8937 0.4245 11 1 5.8906 4.0481 1.4823 12 7 7.5500 3.9547 0.1987 13 16 8.5963 3.5942 1.4306 14 8 9.9060 3.7102 0.8916 15 8 8.1534 4.3312 2.5619 16 6 8.3699 1.8921 1.8260 17 1 7.6449 1.3036 1.2834 18 6 9.1191 1.3114 2.8272 19 7 10.0023 2.0281 3.4874 20 14 8.8797 -0.4933 3.2459 21 1 7.8346 -1.0717 2.3635 22 1 10.1573 -1.2223 3.0426 23 1 8.4571 -0.6206 4.6637 24 6 5.4052 4.9760 -0.4070 25 6 3.9423 5.0471 0.0253 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.2149 2.3263 -0.0008 30 1 1.3433 4.5073 0.0086 31 1 4.0151 0.3810 0.0003 32 1 5.9427 1.7644 0.6664 33 1 5.9231 2.3162 -1.0232 34 1 7.8946 4.2062 -0.6725 35 1 10.5291 1.6196 4.1921 36 1 5.8861 5.9389 -0.2346 37 1 5.4639 4.7208 -1.4652 38 1 3.3974 5.7000 -0.6566 39 1 3.8851 5.4545 1.0346 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192995742.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:33:00 Heat of formation + Delta-G solvation = -119.470993 kcal Electronic energy + Delta-G solvation = -23864.263152 eV Core-core repulsion = 20283.708073 eV Total energy + Delta-G solvation = -3580.555079 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.102 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.40939 -38.66867 -36.05161 -35.11568 -33.91669 -33.09453 -32.78431 -31.92532 -29.25733 -28.13314 -26.86771 -26.08180 -23.38265 -22.18059 -22.02858 -19.58458 -18.89793 -17.79253 -17.30232 -16.45228 -16.20547 -15.84448 -15.53948 -15.43857 -14.84339 -14.37443 -14.04003 -13.78192 -13.67300 -13.41632 -13.32902 -12.96356 -12.85552 -12.25703 -12.21316 -11.99960 -11.89063 -11.61901 -11.21508 -11.20436 -10.80425 -10.71914 -10.68483 -10.57103 -10.46266 -10.25806 -10.14744 -10.03621 -9.23130 -8.96026 -8.69431 -8.50002 -7.99220 -6.67757 -5.29078 1.37163 1.46514 2.37275 3.07743 3.16398 3.19812 3.23472 3.75625 4.08318 4.58363 4.67373 4.72123 4.85204 4.92677 4.95806 4.99672 5.05131 5.21723 5.24676 5.28189 5.30865 5.62275 5.66959 5.72598 5.74621 5.88194 5.94866 6.01803 6.08238 6.12458 6.29318 6.35166 6.41364 6.48036 6.62371 6.73153 6.86184 6.96974 7.36024 7.38407 7.93922 8.01893 8.92208 10.26512 Molecular weight = 311.10amu Principal moments of inertia in cm(-1) A = 0.014588 B = 0.004713 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.939582 B = 5939.664675 C = 7493.791254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.120 3.880 4 C -0.213 4.213 5 C -0.081 4.081 6 C -0.114 4.114 7 C -0.021 4.021 8 C -0.152 4.152 9 C -0.110 4.110 10 C 0.161 3.839 11 H 0.096 0.904 12 N -1.131 6.131 13 S 2.713 3.287 14 O -1.008 7.008 15 O -1.007 7.007 16 C -1.020 5.020 17 H 0.105 0.895 18 C 0.134 3.866 19 N -0.845 5.845 20 Si 0.917 3.083 21 H -0.261 1.261 22 H -0.272 1.272 23 H -0.271 1.271 24 C -0.124 4.124 25 C -0.074 4.074 26 H 0.097 0.903 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.131 0.869 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.402 0.598 35 H 0.290 0.710 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.221 0.236 -8.361 20.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.233 6.233 3 C 0.076 3.924 4 C -0.232 4.232 5 C -0.099 4.099 6 C -0.114 4.114 7 C -0.021 4.021 8 C -0.170 4.170 9 C -0.149 4.149 10 C 0.053 3.947 11 H 0.114 0.886 12 N -0.884 5.884 13 S 2.813 3.187 14 O -0.998 6.998 15 O -0.997 6.997 16 C -1.153 5.153 17 H 0.124 0.876 18 C -0.084 4.084 19 N -0.475 5.475 20 Si 0.741 3.259 21 H -0.185 1.185 22 H -0.197 1.197 23 H -0.196 1.196 24 C -0.163 4.163 25 C -0.111 4.111 26 H 0.115 0.885 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.141 0.859 30 H 0.140 0.860 31 H 0.149 0.851 32 H 0.115 0.885 33 H 0.103 0.897 34 H 0.232 0.768 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.458 0.667 -7.634 19.066 hybrid contribution -0.613 -1.443 -0.198 1.580 sum -18.071 -0.777 -7.832 19.711 Atomic orbital electron populations 1.23004 0.78785 1.03645 1.01158 1.86071 1.21049 1.27180 1.89002 1.18885 0.92290 0.83979 0.97277 1.21072 0.99602 0.92441 1.10053 1.20888 0.93843 0.96915 0.98299 1.19585 0.93045 0.94975 1.03796 1.19457 0.95608 0.91334 0.95749 1.20468 0.91275 0.98504 1.06782 1.21269 0.89777 1.00187 1.03641 1.20491 0.80280 0.93252 1.00689 0.88601 1.56052 1.15858 1.87133 1.29328 1.00464 0.71001 0.76340 0.70945 1.93374 1.37833 1.89210 1.79422 1.93359 1.82068 1.74346 1.49912 1.30662 1.33437 1.21237 1.29947 0.87648 1.24722 0.90983 1.00507 0.92153 1.69906 1.19439 1.38089 1.20060 0.86188 0.79129 0.81680 0.78948 1.18503 1.19665 1.19647 1.21859 0.94673 0.99688 1.00099 1.20392 0.95303 0.93138 1.02301 0.88495 0.92784 0.92872 0.85855 0.86028 0.85136 0.88473 0.89676 0.76754 0.89993 0.90599 0.91336 0.90834 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.82 101.05 0.99 1.22 16 2 O -0.32 -4.02 10.50 -19.42 -0.20 -4.22 16 3 C 0.12 1.61 6.68 -39.31 -0.26 1.35 16 4 C -0.21 -2.46 9.04 -39.53 -0.36 -2.81 16 5 C -0.08 -0.93 9.60 -39.46 -0.38 -1.31 16 6 C -0.11 -1.49 5.74 -104.57 -0.60 -2.09 16 7 C -0.02 -0.30 5.74 -104.63 -0.60 -0.90 16 8 C -0.15 -2.21 9.55 -39.29 -0.38 -2.59 16 9 C -0.11 -1.74 5.27 -28.05 -0.15 -1.89 16 10 C 0.16 2.72 2.81 -67.90 -0.19 2.52 16 11 H 0.10 1.79 7.48 -51.93 -0.39 1.41 16 12 N -1.13 -21.66 5.50 -4.87 -0.03 -21.69 16 13 S 2.71 70.79 5.00 -107.50 -0.54 70.25 16 14 O -1.01 -29.34 18.02 -57.17 -1.03 -30.37 16 15 O -1.01 -29.12 17.36 -57.17 -0.99 -30.12 16 16 C -1.02 -27.43 9.61 30.60 0.29 -27.14 16 17 H 0.11 2.56 5.87 -52.49 -0.31 2.25 16 18 C 0.13 3.72 5.46 -17.82 -0.10 3.62 16 19 N -0.85 -24.80 13.19 55.43 0.73 -24.07 16 20 Si 0.92 20.57 29.54 -169.99 -5.02 15.55 16 21 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 24 C -0.12 -1.61 5.51 -26.71 -0.15 -1.76 16 25 C -0.07 -0.85 5.67 -28.06 -0.16 -1.01 16 26 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.38 7.67 -51.93 -0.40 -0.02 16 28 H 0.05 0.36 7.67 -51.93 -0.40 -0.04 16 29 H 0.12 1.10 6.33 -52.49 -0.33 0.77 16 30 H 0.12 1.08 8.05 -52.49 -0.42 0.66 16 31 H 0.13 1.86 8.05 -52.48 -0.42 1.44 16 32 H 0.10 1.70 6.06 -51.93 -0.31 1.39 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.40 6.56 8.83 -34.48 -0.30 6.25 16 35 H 0.29 7.64 8.31 -40.82 -0.34 7.30 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 38 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 334.04 15.07 5.03 5.03 Total: -1.00 -35.62 334.04 -9.04 -44.65 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -4.96 Total: 7.77 kcal Atomic # 6 Polarization: -30.76 SS G_CDS: -2.03 Total: -32.79 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: 0.70 Total: -45.76 kcal Atomic # 8 Polarization: -62.48 SS G_CDS: -2.23 Total: -64.71 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 70.79 SS G_CDS: -0.54 Total: 70.25 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.62 -9.04 -44.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192995742.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.817 kcal (2) G-P(sol) polarization free energy of solvation -35.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds