Wall clock time and date at job start Fri Apr 10 2020 14:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35898 * 116.99813 * 2 1 4 4 C 1.38766 * 120.17545 * 0.04220 * 3 2 1 5 5 C 1.37833 * 119.71576 * 179.85825 * 4 3 2 6 6 C 1.38965 * 120.62206 * 359.96277 * 5 4 3 7 7 C 1.37702 * 119.76716 * 0.30516 * 6 5 4 8 8 C 1.38433 * 120.17702 * 179.97438 * 3 2 1 9 9 C 1.50645 * 122.55298 * 179.23991 * 7 6 5 10 10 C 1.52727 * 110.58562 * 18.09973 * 9 7 6 11 11 H 1.09003 * 109.68225 * 68.55751 * 10 9 7 12 12 N 1.46499 * 109.68357 * 189.07870 * 10 9 7 13 13 S 1.65600 * 119.99804 * 265.00193 * 12 10 9 14 14 O 1.42106 * 106.40202 * 178.53798 * 13 12 10 15 15 O 1.42099 * 106.40136 * 311.45480 * 13 12 10 16 16 C 1.76200 * 107.22086 * 64.99665 * 13 12 10 17 17 H 1.07996 * 119.99668 * 0.02562 * 16 13 12 18 18 C 1.37877 * 119.99694 * 179.97438 * 16 13 12 19 19 N 1.31509 * 120.00037 * 0.02562 * 18 16 13 20 20 Si 1.86804 * 119.99696 * 180.02562 * 18 16 13 21 21 H 1.48501 * 109.47142 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47064 * 120.00041 * 20 18 16 23 23 H 1.48491 * 109.47051 * 240.00204 * 20 18 16 24 24 C 1.53326 * 108.38331 * 308.80303 * 10 9 7 25 25 C 1.50649 * 117.69874 * 180.66223 * 6 5 4 26 26 H 1.09002 * 109.47054 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47358 * 299.99964 * 1 2 3 28 28 H 1.09002 * 109.46805 * 60.00364 * 1 2 3 29 29 H 1.07997 * 120.14009 * 359.85597 * 4 3 2 30 30 H 1.08001 * 119.68701 * 180.24948 * 5 4 3 31 31 H 1.08005 * 119.74244 * 0.03963 * 8 3 2 32 32 H 1.09004 * 109.25563 * 138.38630 * 9 7 6 33 33 H 1.09003 * 109.25333 * 257.84987 * 9 7 6 34 34 H 0.97004 * 119.99632 * 84.99345 * 12 10 9 35 35 H 0.97004 * 119.99681 * 179.97438 * 19 18 16 36 36 H 1.09001 * 109.67456 * 189.55653 * 24 10 9 37 37 H 1.09003 * 109.67366 * 310.05458 * 24 10 9 38 38 H 1.09004 * 109.24706 * 317.93645 * 25 6 5 39 39 H 1.08994 * 109.24896 * 77.35268 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2937 2.3770 0.0009 5 6 1.9292 3.6000 0.0038 6 6 3.3167 3.6767 0.0067 7 6 4.0653 2.5210 0.0003 8 6 3.4281 1.2876 0.0005 9 6 5.5717 2.5310 -0.0140 10 6 6.1038 3.8937 0.4245 11 1 5.8906 4.0481 1.4823 12 7 7.5500 3.9547 0.1987 13 16 8.5963 3.5942 1.4306 14 8 9.9060 3.7102 0.8916 15 8 8.1534 4.3312 2.5619 16 6 8.3699 1.8921 1.8260 17 1 7.6449 1.3036 1.2834 18 6 9.1191 1.3114 2.8272 19 7 10.0023 2.0281 3.4874 20 14 8.8797 -0.4933 3.2459 21 1 7.8346 -1.0717 2.3635 22 1 10.1573 -1.2223 3.0426 23 1 8.4571 -0.6206 4.6637 24 6 5.4052 4.9760 -0.4070 25 6 3.9423 5.0471 0.0253 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.2149 2.3263 -0.0008 30 1 1.3433 4.5073 0.0086 31 1 4.0151 0.3810 0.0003 32 1 5.9427 1.7644 0.6664 33 1 5.9231 2.3162 -1.0232 34 1 7.8946 4.2062 -0.6725 35 1 10.5291 1.6196 4.1921 36 1 5.8861 5.9389 -0.2346 37 1 5.4639 4.7208 -1.4652 38 1 3.3974 5.7000 -0.6566 39 1 3.8851 5.4545 1.0346 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192995742.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:32:58 Heat of formation + Delta-G solvation = -146.357464 kcal Electronic energy + Delta-G solvation = -23865.429037 eV Core-core repulsion = 20283.708073 eV Total energy + Delta-G solvation = -3581.720964 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.102 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -41.37027 -39.66279 -37.46753 -37.07877 -36.12444 -35.18662 -33.90322 -33.10310 -30.17582 -29.29750 -28.26092 -27.61566 -24.44727 -23.17441 -23.15769 -21.05174 -20.55657 -19.36613 -18.55959 -18.23865 -17.49789 -17.02013 -16.73594 -16.56533 -16.47562 -15.94584 -15.54132 -15.34233 -14.77102 -14.54640 -14.42015 -14.19103 -14.03571 -13.83869 -13.42541 -13.24185 -13.08210 -13.03752 -12.74029 -12.68307 -12.50755 -12.43959 -12.29727 -12.15079 -11.78505 -11.72089 -11.48583 -11.39977 -11.26073 -10.90989 -10.22403 -9.67732 -8.93433 -8.74825 -7.45707 0.37392 0.40047 0.50186 1.31385 1.33195 1.49825 2.19934 2.40360 2.58912 2.78673 2.96910 3.69360 3.77074 3.82723 3.94661 3.99877 4.14824 4.18340 4.30157 4.38399 4.42196 4.42876 4.57339 4.62484 4.68898 4.74101 4.75893 4.82047 4.95526 5.04952 5.11646 5.13571 5.28771 5.33577 5.42353 5.46376 5.51674 5.75154 5.91183 5.96011 6.44891 6.51546 6.80866 8.22037 Molecular weight = 311.10amu Principal moments of inertia in cm(-1) A = 0.014588 B = 0.004713 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.939582 B = 5939.664675 C = 7493.791254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.342 6.342 3 C 0.111 3.889 4 C -0.208 4.208 5 C -0.076 4.076 6 C -0.123 4.123 7 C -0.039 4.039 8 C -0.177 4.177 9 C -0.105 4.105 10 C 0.153 3.847 11 H 0.070 0.930 12 N -1.114 6.114 13 S 2.719 3.281 14 O -1.046 7.046 15 O -1.044 7.044 16 C -1.036 5.036 17 H 0.123 0.877 18 C 0.073 3.927 19 N -0.894 5.894 20 Si 0.983 3.017 21 H -0.248 1.248 22 H -0.259 1.259 23 H -0.261 1.261 24 C -0.118 4.118 25 C -0.071 4.071 26 H 0.115 0.885 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.154 0.846 30 H 0.156 0.844 31 H 0.119 0.881 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.417 0.583 35 H 0.298 0.702 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.261 -0.003 -9.487 23.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.257 6.257 3 C 0.066 3.934 4 C -0.226 4.226 5 C -0.094 4.094 6 C -0.124 4.124 7 C -0.040 4.040 8 C -0.196 4.196 9 C -0.144 4.144 10 C 0.046 3.954 11 H 0.089 0.911 12 N -0.872 5.872 13 S 2.820 3.180 14 O -1.036 7.036 15 O -1.033 7.033 16 C -1.170 5.170 17 H 0.141 0.859 18 C -0.140 4.140 19 N -0.525 5.525 20 Si 0.801 3.199 21 H -0.171 1.171 22 H -0.183 1.183 23 H -0.185 1.185 24 C -0.157 4.157 25 C -0.108 4.108 26 H 0.133 0.867 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.171 0.829 30 H 0.173 0.827 31 H 0.137 0.863 32 H 0.089 0.911 33 H 0.113 0.887 34 H 0.251 0.749 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.126 0.874 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -20.502 0.445 -8.778 22.307 hybrid contribution 0.208 -1.349 0.103 1.369 sum -20.294 -0.905 -8.675 22.089 Atomic orbital electron populations 1.23329 0.76408 1.05405 1.02354 1.86042 1.23579 1.27114 1.88920 1.19014 0.92048 0.85086 0.97210 1.21433 1.01083 0.91676 1.08453 1.21262 0.93277 0.98243 0.96618 1.19815 0.94001 0.94887 1.03658 1.19373 0.94635 0.92301 0.97659 1.20501 0.92377 0.98203 1.08513 1.21124 0.91284 0.98541 1.03443 1.20726 0.78680 0.95709 1.00316 0.91132 1.55393 1.16463 1.86764 1.28550 0.99894 0.70774 0.76167 0.71201 1.93311 1.40650 1.89568 1.80082 1.93304 1.82595 1.75106 1.52334 1.31025 1.33744 1.21926 1.30285 0.85864 1.25924 0.90366 1.05809 0.91872 1.69995 1.20828 1.40529 1.21185 0.85204 0.79914 0.75402 0.79348 1.17114 1.18317 1.18500 1.21858 0.95361 0.98222 1.00294 1.20445 0.94215 0.92972 1.03187 0.86684 0.91745 0.91354 0.82868 0.82664 0.86336 0.91126 0.88657 0.74860 0.89206 0.89959 0.89515 0.87406 0.90332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.82 113.37 1.11 1.37 16 2 O -0.34 -8.17 10.50 -92.40 -0.97 -9.14 16 3 C 0.11 2.84 6.68 22.44 0.15 2.99 16 4 C -0.21 -4.15 9.04 22.30 0.20 -3.94 16 5 C -0.08 -1.48 9.60 22.35 0.21 -1.26 16 6 C -0.12 -2.95 5.74 -19.83 -0.11 -3.07 16 7 C -0.04 -1.12 5.74 -19.87 -0.11 -1.24 16 8 C -0.18 -5.19 9.55 22.46 0.21 -4.98 16 9 C -0.11 -3.37 5.27 29.74 0.16 -3.21 16 10 C 0.15 5.17 2.81 45.01 0.13 5.29 16 11 H 0.07 2.74 7.48 -2.39 -0.02 2.72 16 12 N -1.11 -43.22 5.50 -169.31 -0.93 -44.15 16 13 S 2.72 146.60 5.00 -56.49 -0.28 146.32 16 14 O -1.05 -62.94 18.02 -128.00 -2.31 -65.25 16 15 O -1.04 -62.77 17.36 -128.00 -2.22 -64.99 16 16 C -1.04 -57.08 9.61 67.73 0.65 -56.42 16 17 H 0.12 6.11 5.87 -2.91 -0.02 6.09 16 18 C 0.07 4.11 5.46 84.66 0.46 4.57 16 19 N -0.89 -53.89 13.19 21.45 0.28 -53.61 16 20 Si 0.98 42.15 29.54 68.60 2.03 44.17 16 21 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 22 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 23 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 24 C -0.12 -2.85 5.51 30.61 0.17 -2.68 16 25 C -0.07 -1.44 5.67 29.74 0.17 -1.27 16 26 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.06 0.72 7.67 -2.39 -0.02 0.70 16 28 H 0.07 0.69 7.67 -2.39 -0.02 0.68 16 29 H 0.15 2.06 6.33 -2.91 -0.02 2.04 16 30 H 0.16 1.94 8.05 -2.91 -0.02 1.92 16 31 H 0.12 3.57 8.05 -2.91 -0.02 3.54 16 32 H 0.07 2.58 6.06 -2.39 -0.01 2.57 16 33 H 0.10 2.74 8.14 -2.39 -0.02 2.73 16 34 H 0.42 13.55 8.83 -96.74 -0.85 12.70 16 35 H 0.30 16.12 8.31 -92.71 -0.77 15.35 16 36 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.09 1.79 8.10 -2.39 -0.02 1.77 16 38 H 0.11 1.50 8.12 -2.38 -0.02 1.48 16 39 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -79.92 334.04 -0.77 -80.70 By element: Atomic # 1 Polarization: 29.58 SS G_CDS: 0.23 Total: 29.81 kcal Atomic # 6 Polarization: -67.26 SS G_CDS: 3.40 Total: -63.86 kcal Atomic # 7 Polarization: -97.11 SS G_CDS: -0.65 Total: -97.76 kcal Atomic # 8 Polarization: -133.88 SS G_CDS: -5.50 Total: -139.37 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Atomic # 16 Polarization: 146.60 SS G_CDS: -0.28 Total: 146.32 kcal Total: -79.92 -0.77 -80.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192995742.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.661 kcal (2) G-P(sol) polarization free energy of solvation -79.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds