Wall clock time and date at job start Fri Apr 10 2020 14:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34753 * 117.00280 * 2 1 4 4 O 1.21514 * 119.99769 * 359.97438 * 3 2 1 5 5 C 1.47387 * 120.00136 * 180.02562 * 3 2 1 6 6 C 1.36669 * 125.77985 * 180.24187 * 5 3 2 7 7 N 1.34782 * 106.83478 * 180.17011 * 6 5 3 8 8 C 1.46497 * 126.58681 * 179.90805 * 7 6 5 9 9 C 1.50694 * 109.47115 * 124.71099 * 8 7 6 10 10 O 1.21283 * 120.00363 * 359.97438 * 9 8 7 11 11 N 1.34784 * 119.99988 * 180.02562 * 9 8 7 12 12 C 1.46493 * 119.99864 * 179.72721 * 11 9 8 13 13 C 1.50698 * 109.47082 * 180.02562 * 12 11 9 14 14 O 1.21297 * 119.99729 * 359.97438 * 13 12 11 15 15 N 1.34778 * 120.00115 * 179.97438 * 13 12 11 16 16 C 1.37102 * 120.00015 * 179.97438 * 15 13 12 17 17 H 1.08005 * 119.99833 * 0.02562 * 16 15 13 18 18 C 1.38945 * 120.00287 * 180.02562 * 16 15 13 19 19 N 1.31411 * 119.99917 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00197 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47023 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47085 * 120.00245 * 20 18 16 23 23 H 1.48500 * 109.47030 * 239.99622 * 20 18 16 24 24 N 1.40212 * 106.82600 * 359.64634 * 7 6 5 25 25 N 1.28761 * 108.38564 * 0.22258 * 24 7 6 26 26 H 1.09002 * 109.46722 * 300.00310 * 1 2 3 27 27 H 1.09002 * 109.47142 * 60.00046 * 1 2 3 28 28 H 1.08997 * 109.47046 * 180.02562 * 1 2 3 29 29 H 1.07996 * 126.58201 * 0.04186 * 6 5 3 30 30 H 1.08998 * 109.46734 * 4.71215 * 8 7 6 31 31 H 1.09002 * 109.47081 * 244.70986 * 8 7 6 32 32 H 0.97000 * 119.99339 * 0.02562 * 11 9 8 33 33 H 1.09007 * 109.47196 * 299.99538 * 12 11 9 34 34 H 1.09006 * 109.47678 * 59.99732 * 12 11 9 35 35 H 0.96995 * 120.00114 * 359.97438 * 15 13 12 36 36 H 0.97001 * 120.00536 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2197 -0.0005 5 6 3.5357 1.2777 -0.0006 6 6 4.2756 2.4267 0.0040 7 7 5.5716 2.0565 -0.0022 8 6 6.7343 2.9476 -0.0024 9 6 7.6293 2.6058 1.1609 10 8 7.3256 1.7067 1.9160 11 7 8.7668 3.3000 1.3627 12 6 9.6338 2.9717 2.4969 13 6 10.8300 3.8884 2.4968 14 8 10.9469 4.7326 1.6337 15 7 11.7697 3.7701 3.4556 16 6 12.8582 4.6037 3.4552 17 1 12.9623 5.3555 2.6867 18 6 13.8274 4.4816 4.4433 19 7 13.7009 3.5666 5.3780 20 14 15.3100 5.6179 4.4430 21 1 15.2165 6.5532 3.2936 22 1 15.3403 6.3924 5.7097 23 1 16.5516 4.8116 4.3262 24 7 5.5931 0.6545 -0.0025 25 7 4.3776 0.2297 -0.0014 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.8950 3.4374 0.0094 30 1 6.3999 3.9811 0.0879 31 1 7.2865 2.8244 -0.9341 32 1 9.0091 4.0199 0.7593 33 1 9.0794 3.0987 3.4268 34 1 9.9680 1.9376 2.4115 35 1 11.6760 3.0953 4.1460 36 1 14.3773 3.4815 6.0681 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346130995.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:34:27 Heat of formation + Delta-G solvation = -49.298824 kcal Electronic energy + Delta-G solvation = -23950.292327 eV Core-core repulsion = 19858.779678 eV Total energy + Delta-G solvation = -4091.512648 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.55991 -40.41913 -39.81794 -38.27741 -36.75078 -34.93775 -34.64037 -33.87680 -31.53590 -31.48109 -29.79772 -28.10362 -27.18053 -24.63426 -24.17273 -22.81030 -21.38926 -20.56861 -19.78508 -18.66977 -18.16134 -17.69540 -17.35916 -16.80801 -16.68242 -16.05495 -15.75193 -15.48722 -15.33478 -14.86631 -14.55490 -14.44981 -14.08281 -14.04423 -13.60149 -13.42941 -13.10981 -12.60198 -12.35507 -12.22156 -12.04034 -11.71998 -11.56270 -11.21351 -11.11776 -11.03450 -11.02754 -10.48119 -10.40880 -10.04970 -9.74172 -9.64908 -9.10685 -8.76871 -8.20325 -6.60406 -4.03054 0.69534 1.29002 1.51068 2.33944 2.37844 2.72703 2.92549 3.03750 3.17455 3.23700 3.61835 3.86272 4.01018 4.06306 4.31629 4.45492 4.52938 4.55558 4.72580 4.78840 4.87212 4.99402 5.07872 5.16912 5.38931 5.71942 5.79094 5.87627 5.91655 5.95725 6.35575 7.30332 7.37596 7.40812 7.73286 7.81210 8.04453 8.33808 8.94965 9.28394 9.75123 10.56206 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.049890 B = 0.001932 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.100262 B =14492.047318 C =14676.116719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.339 6.339 3 C 0.562 3.438 4 O -0.508 6.508 5 C -0.096 4.096 6 C 0.107 3.893 7 N -0.346 5.346 8 C 0.102 3.898 9 C 0.498 3.502 10 O -0.519 6.519 11 N -0.699 5.699 12 C 0.110 3.890 13 C 0.425 3.575 14 O -0.599 6.599 15 N -0.546 5.546 16 C -0.307 4.307 17 H 0.107 0.893 18 C 0.027 3.973 19 N -0.892 5.892 20 Si 0.934 3.066 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.280 1.280 24 N -0.020 5.020 25 N -0.187 5.187 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.104 0.896 29 H 0.210 0.790 30 H 0.139 0.861 31 H 0.135 0.865 32 H 0.414 0.586 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.396 0.604 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.122 -2.343 -10.452 22.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.254 6.254 3 C 0.404 3.596 4 O -0.395 6.395 5 C -0.232 4.232 6 C -0.050 4.050 7 N -0.129 5.129 8 C -0.023 4.023 9 C 0.280 3.720 10 O -0.394 6.394 11 N -0.354 5.354 12 C -0.017 4.017 13 C 0.211 3.789 14 O -0.486 6.486 15 N -0.180 5.180 16 C -0.436 4.436 17 H 0.125 0.875 18 C -0.177 4.177 19 N -0.532 5.532 20 Si 0.760 3.240 21 H -0.191 1.191 22 H -0.206 1.206 23 H -0.205 1.205 24 N -0.002 5.002 25 N -0.063 5.063 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.123 0.877 29 H 0.227 0.773 30 H 0.157 0.843 31 H 0.153 0.847 32 H 0.252 0.748 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.230 0.770 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.417 -3.398 -10.289 22.236 hybrid contribution 0.218 1.496 0.342 1.550 sum -19.199 -1.902 -9.947 21.706 Atomic orbital electron populations 1.23352 0.75652 1.04069 1.02691 1.86654 1.23521 1.31575 1.83684 1.19399 0.86109 0.81814 0.72237 1.90878 1.65734 1.35966 1.46942 1.20128 0.92506 0.89858 1.20711 1.23296 0.83285 1.01387 0.96996 1.49971 1.05588 1.08219 1.49113 1.21879 0.85351 0.93731 1.01374 1.20104 0.82288 0.83263 0.86313 1.90836 1.72640 1.29713 1.46182 1.45536 1.21574 1.37357 1.30910 1.21009 0.91440 0.99814 0.89451 1.19653 0.85658 0.88071 0.85529 1.90498 1.78985 1.39343 1.39791 1.41806 1.19250 1.32293 1.24641 1.19788 0.97828 1.13871 1.12161 0.87520 1.25354 0.99557 0.97512 0.95245 1.69617 1.36142 1.33019 1.14400 0.85740 0.80219 0.79578 0.78448 1.19094 1.20559 1.20536 1.82284 1.12875 0.85542 1.19496 1.74835 0.96744 1.25584 1.09124 0.91639 0.91673 0.87723 0.77309 0.84290 0.84737 0.74805 0.89610 0.89433 0.76983 0.91505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.57 101.05 1.07 1.31 16 2 O -0.34 -3.67 10.57 -40.63 -0.43 -4.10 16 3 C 0.56 6.51 7.96 34.45 0.27 6.78 16 4 O -0.51 -6.23 16.65 -19.28 -0.32 -6.55 16 5 C -0.10 -1.14 7.02 -83.57 -0.59 -1.73 16 6 C 0.11 0.97 11.27 -16.82 -0.19 0.78 16 7 N -0.35 -3.64 3.41 -62.24 -0.21 -3.85 16 8 C 0.10 0.77 7.02 -5.20 -0.04 0.73 16 9 C 0.50 6.30 7.86 -10.98 -0.09 6.21 16 10 O -0.52 -8.89 15.73 5.56 0.09 -8.81 16 11 N -0.70 -9.41 5.53 -61.47 -0.34 -9.75 16 12 C 0.11 1.82 6.15 -5.20 -0.03 1.78 16 13 C 0.43 9.02 7.85 -10.99 -0.09 8.94 16 14 O -0.60 -14.15 15.24 5.54 0.08 -14.06 16 15 N -0.55 -12.87 5.29 -10.96 -0.06 -12.93 16 16 C -0.31 -8.03 9.68 -14.93 -0.14 -8.17 16 17 H 0.11 2.90 7.16 -52.48 -0.38 2.53 16 18 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 19 N -0.89 -23.17 13.05 55.50 0.72 -22.44 16 20 Si 0.93 19.88 29.55 -169.99 -5.02 14.85 16 21 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 22 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 23 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 24 N -0.02 -0.29 12.88 60.35 0.78 0.48 16 25 N -0.19 -2.68 12.39 32.83 0.41 -2.28 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.21 0.99 8.06 -52.49 -0.42 0.57 16 30 H 0.14 0.45 8.08 -51.93 -0.42 0.03 16 31 H 0.13 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.41 5.12 7.44 -40.82 -0.30 4.82 16 33 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 34 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 35 H 0.40 9.04 7.90 -40.82 -0.32 8.71 16 36 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 338.29 15.07 5.10 5.10 Total: -1.00 -35.53 338.29 -2.64 -38.17 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -3.51 Total: 8.96 kcal Atomic # 6 Polarization: 17.13 SS G_CDS: 0.08 Total: 17.21 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: 1.30 Total: -50.77 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -0.58 Total: -33.52 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.53 -2.64 -38.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346130995.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.130 kcal (2) G-P(sol) polarization free energy of solvation -35.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds