Wall clock time and date at job start Fri Apr 10 2020 14:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34753 * 117.00280 * 2 1 4 4 O 1.21514 * 119.99769 * 359.97438 * 3 2 1 5 5 C 1.47387 * 120.00136 * 180.02562 * 3 2 1 6 6 C 1.36669 * 125.77985 * 180.24187 * 5 3 2 7 7 N 1.34782 * 106.83478 * 180.17011 * 6 5 3 8 8 C 1.46497 * 126.58681 * 179.90805 * 7 6 5 9 9 C 1.50694 * 109.47115 * 124.71099 * 8 7 6 10 10 O 1.21283 * 120.00363 * 359.97438 * 9 8 7 11 11 N 1.34784 * 119.99988 * 180.02562 * 9 8 7 12 12 C 1.46493 * 119.99864 * 179.72721 * 11 9 8 13 13 C 1.50698 * 109.47082 * 180.02562 * 12 11 9 14 14 O 1.21297 * 119.99729 * 359.97438 * 13 12 11 15 15 N 1.34778 * 120.00115 * 179.97438 * 13 12 11 16 16 C 1.37102 * 120.00015 * 179.97438 * 15 13 12 17 17 H 1.08005 * 119.99833 * 0.02562 * 16 15 13 18 18 C 1.38945 * 120.00287 * 180.02562 * 16 15 13 19 19 N 1.31411 * 119.99917 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00197 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47023 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47085 * 120.00245 * 20 18 16 23 23 H 1.48500 * 109.47030 * 239.99622 * 20 18 16 24 24 N 1.40212 * 106.82600 * 359.64634 * 7 6 5 25 25 N 1.28761 * 108.38564 * 0.22258 * 24 7 6 26 26 H 1.09002 * 109.46722 * 300.00310 * 1 2 3 27 27 H 1.09002 * 109.47142 * 60.00046 * 1 2 3 28 28 H 1.08997 * 109.47046 * 180.02562 * 1 2 3 29 29 H 1.07996 * 126.58201 * 0.04186 * 6 5 3 30 30 H 1.08998 * 109.46734 * 4.71215 * 8 7 6 31 31 H 1.09002 * 109.47081 * 244.70986 * 8 7 6 32 32 H 0.97000 * 119.99339 * 0.02562 * 11 9 8 33 33 H 1.09007 * 109.47196 * 299.99538 * 12 11 9 34 34 H 1.09006 * 109.47678 * 59.99732 * 12 11 9 35 35 H 0.96995 * 120.00114 * 359.97438 * 15 13 12 36 36 H 0.97001 * 120.00536 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2197 -0.0005 5 6 3.5357 1.2777 -0.0006 6 6 4.2756 2.4267 0.0040 7 7 5.5716 2.0565 -0.0022 8 6 6.7343 2.9476 -0.0024 9 6 7.6293 2.6058 1.1609 10 8 7.3256 1.7067 1.9160 11 7 8.7668 3.3000 1.3627 12 6 9.6338 2.9717 2.4969 13 6 10.8300 3.8884 2.4968 14 8 10.9469 4.7326 1.6337 15 7 11.7697 3.7701 3.4556 16 6 12.8582 4.6037 3.4552 17 1 12.9623 5.3555 2.6867 18 6 13.8274 4.4816 4.4433 19 7 13.7009 3.5666 5.3780 20 14 15.3100 5.6179 4.4430 21 1 15.2165 6.5532 3.2936 22 1 15.3403 6.3924 5.7097 23 1 16.5516 4.8116 4.3262 24 7 5.5931 0.6545 -0.0025 25 7 4.3776 0.2297 -0.0014 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.8950 3.4374 0.0094 30 1 6.3999 3.9811 0.0879 31 1 7.2865 2.8244 -0.9341 32 1 9.0091 4.0199 0.7593 33 1 9.0794 3.0987 3.4268 34 1 9.9680 1.9376 2.4115 35 1 11.6760 3.0953 4.1460 36 1 14.3773 3.4815 6.0681 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346130995.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:34:26 Heat of formation + Delta-G solvation = -78.943102 kcal Electronic energy + Delta-G solvation = -23951.577799 eV Core-core repulsion = 19858.779678 eV Total energy + Delta-G solvation = -4092.798121 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.111 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -43.38877 -41.26002 -40.98088 -39.90876 -37.55482 -36.30165 -35.71569 -35.38054 -33.38395 -32.33751 -30.77551 -28.94317 -28.26705 -26.36092 -24.97542 -23.71024 -22.24880 -21.55122 -21.39733 -20.12433 -19.46995 -18.72837 -18.14533 -17.65883 -17.54815 -17.30173 -17.03051 -16.62773 -16.51589 -16.19617 -15.80401 -15.72087 -15.47318 -14.87805 -14.77721 -14.28160 -14.04323 -13.96158 -13.55438 -13.51262 -13.22679 -12.91899 -12.90288 -12.44739 -12.41200 -12.11054 -11.89437 -11.87085 -11.81426 -11.57926 -11.07207 -10.57072 -10.49199 -10.29416 -10.09590 -8.51776 -6.01998 -0.04525 0.37792 0.81270 1.34733 1.39805 1.43649 1.57176 1.65025 1.87713 1.90375 1.92722 2.29863 3.09348 3.10638 3.15874 3.37098 3.57223 3.79156 3.80389 4.08560 4.18963 4.30590 4.30965 4.37796 4.40691 4.43288 4.54655 4.75381 5.15120 5.19961 5.21186 5.38371 5.91129 6.36804 6.47532 6.49119 6.87623 7.02289 7.03821 7.43992 7.92887 8.65201 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.049890 B = 0.001932 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.100262 B =14492.047318 C =14676.116719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.356 6.356 3 C 0.563 3.437 4 O -0.519 6.519 5 C -0.121 4.121 6 C 0.134 3.866 7 N -0.344 5.344 8 C 0.105 3.895 9 C 0.499 3.501 10 O -0.567 6.567 11 N -0.696 5.696 12 C 0.123 3.877 13 C 0.434 3.566 14 O -0.620 6.620 15 N -0.561 5.561 16 C -0.335 4.335 17 H 0.089 0.911 18 C -0.012 4.012 19 N -0.917 5.917 20 Si 0.997 3.003 21 H -0.268 1.268 22 H -0.273 1.273 23 H -0.273 1.273 24 N -0.066 5.066 25 N -0.215 5.215 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.130 0.870 29 H 0.257 0.743 30 H 0.195 0.805 31 H 0.167 0.833 32 H 0.421 0.579 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.398 0.602 36 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.932 -0.903 -11.345 23.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.272 6.272 3 C 0.407 3.593 4 O -0.408 6.408 5 C -0.258 4.258 6 C -0.023 4.023 7 N -0.127 5.127 8 C -0.018 4.018 9 C 0.284 3.716 10 O -0.445 6.445 11 N -0.351 5.351 12 C -0.005 4.005 13 C 0.221 3.779 14 O -0.508 6.508 15 N -0.197 5.197 16 C -0.465 4.465 17 H 0.107 0.893 18 C -0.212 4.212 19 N -0.557 5.557 20 Si 0.820 3.180 21 H -0.192 1.192 22 H -0.198 1.198 23 H -0.199 1.199 24 N -0.047 5.047 25 N -0.090 5.090 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.148 0.852 29 H 0.273 0.727 30 H 0.212 0.788 31 H 0.184 0.816 32 H 0.261 0.739 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.232 0.768 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.233 -1.971 -11.205 23.213 hybrid contribution 0.355 1.053 0.572 1.249 sum -19.879 -0.919 -10.634 22.563 Atomic orbital electron populations 1.23668 0.73602 1.05985 1.03172 1.86640 1.25679 1.31443 1.83392 1.19409 0.86121 0.81890 0.71904 1.90858 1.65950 1.36173 1.47809 1.20511 0.92797 0.90537 1.21941 1.24022 0.82165 1.02414 0.93738 1.50147 1.06873 1.07368 1.48298 1.22294 0.84121 0.95548 0.99867 1.20927 0.81884 0.81853 0.86889 1.90832 1.73621 1.31722 1.48335 1.45483 1.21642 1.37843 1.30144 1.20744 0.89960 0.98520 0.91294 1.20380 0.85930 0.87597 0.83966 1.90476 1.79697 1.40359 1.40315 1.41879 1.19623 1.32561 1.25608 1.19790 0.99477 1.14654 1.12552 0.89277 1.26134 1.01751 0.98748 0.94616 1.69685 1.37094 1.34095 1.14870 0.84808 0.76989 0.77749 0.78433 1.19189 1.19810 1.19867 1.82207 1.13029 0.87917 1.21580 1.74789 0.97297 1.27134 1.09759 0.91354 0.90982 0.85214 0.72670 0.78781 0.81555 0.73886 0.88814 0.89070 0.76817 0.91137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.57 113.37 1.20 1.55 16 2 O -0.36 -7.57 10.57 -56.63 -0.60 -8.17 16 3 C 0.56 12.58 7.96 70.23 0.56 13.14 16 4 O -0.52 -11.98 16.65 19.79 0.33 -11.65 16 5 C -0.12 -2.75 7.02 40.79 0.29 -2.47 16 6 C 0.13 2.02 11.27 83.87 0.95 2.96 16 7 N -0.34 -6.34 3.41 -350.81 -1.20 -7.53 16 8 C 0.10 1.16 7.02 85.63 0.60 1.76 16 9 C 0.50 11.53 7.86 87.65 0.69 12.22 16 10 O -0.57 -18.99 15.73 -3.04 -0.05 -19.03 16 11 N -0.70 -17.34 5.53 -466.78 -2.58 -19.92 16 12 C 0.12 3.94 6.15 85.63 0.53 4.47 16 13 C 0.43 18.31 7.85 87.66 0.69 19.00 16 14 O -0.62 -29.00 15.24 -3.08 -0.05 -29.04 16 15 N -0.56 -26.78 5.29 -306.98 -1.62 -28.40 16 16 C -0.34 -17.74 9.68 84.04 0.81 -16.93 16 17 H 0.09 4.94 7.16 -2.91 -0.02 4.92 16 18 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 19 N -0.92 -47.76 13.05 21.66 0.28 -47.47 16 20 Si 1.00 40.54 29.55 68.60 2.03 42.57 16 21 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 22 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 23 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 24 N -0.07 -1.88 12.88 37.02 0.48 -1.40 16 25 N -0.21 -6.18 12.39 -50.03 -0.62 -6.80 16 26 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.26 1.12 8.06 -2.91 -0.02 1.10 16 30 H 0.20 0.05 8.08 -2.39 -0.02 0.03 16 31 H 0.17 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.42 9.37 7.44 -92.71 -0.69 8.68 16 33 H 0.09 2.91 8.14 -2.38 -0.02 2.89 16 34 H 0.09 2.91 8.14 -2.38 -0.02 2.89 16 35 H 0.40 18.45 7.90 -92.71 -0.73 17.71 16 36 H 0.28 13.61 8.31 -92.71 -0.77 12.84 16 Total: -1.00 -80.09 338.29 2.93 -77.16 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: -0.25 Total: 24.14 kcal Atomic # 6 Polarization: 28.79 SS G_CDS: 6.77 Total: 35.56 kcal Atomic # 7 Polarization: -106.27 SS G_CDS: -5.26 Total: -111.53 kcal Atomic # 8 Polarization: -67.53 SS G_CDS: -0.36 Total: -67.90 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Total: -80.09 2.93 -77.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346130995.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.783 kcal (2) G-P(sol) polarization free energy of solvation -80.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds