Wall clock time and date at job start Fri Apr 10 2020 14:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40065 * 125.95267 * 2 1 4 4 C 1.31916 * 108.25336 * 179.97438 * 3 2 1 5 5 C 1.47600 * 125.96527 * 179.97438 * 4 3 2 6 6 O 1.21491 * 119.99986 * 180.02562 * 5 4 3 7 7 O 1.34738 * 119.99981 * 0.02618 * 5 4 3 8 8 C 1.41050 * 108.06490 * 359.97438 * 4 3 2 9 9 C 1.35730 * 107.78993 * 0.02562 * 8 4 3 10 10 N 1.39536 * 126.10097 * 179.97438 * 9 8 4 11 11 C 1.34780 * 120.00105 * 359.97438 * 10 9 8 12 12 O 1.21584 * 120.00078 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99724 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99722 * 180.02562 * 13 11 10 15 15 C 1.50694 * 109.46944 * 180.02562 * 14 13 11 16 16 O 1.21289 * 120.00139 * 359.97438 * 15 14 13 17 17 N 1.34778 * 120.00018 * 179.97438 * 15 14 13 18 18 C 1.37095 * 120.00525 * 180.02562 * 17 15 14 19 19 H 1.08003 * 119.99401 * 359.97438 * 18 17 15 20 20 C 1.38944 * 120.00387 * 179.97438 * 18 17 15 21 21 N 1.31414 * 119.99941 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00112 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47330 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47149 * 120.00266 * 22 20 18 25 25 H 1.48504 * 109.46935 * 240.00153 * 22 20 18 26 26 H 1.09000 * 109.46883 * 90.02304 * 1 2 3 27 27 H 1.08997 * 109.46897 * 210.02306 * 1 2 3 28 28 H 1.08998 * 109.47107 * 330.02965 * 1 2 3 29 29 H 0.96695 * 116.99717 * 179.97438 * 7 5 4 30 30 H 1.08001 * 126.10627 * 180.02562 * 8 4 3 31 31 H 0.97001 * 120.00024 * 180.02562 * 10 9 8 32 32 H 0.97001 * 120.00399 * 0.02562 * 13 11 10 33 33 H 1.09005 * 109.46660 * 299.99979 * 14 13 11 34 34 H 1.09000 * 109.47166 * 59.99753 * 14 13 11 35 35 H 0.97007 * 119.99504 * 359.97438 * 17 15 14 36 36 H 0.96996 * 120.00012 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2874 1.1338 0.0000 4 6 3.5441 0.7328 0.0006 5 6 4.7331 1.6073 0.0002 6 8 5.8458 1.1197 0.0003 7 8 4.5844 2.9465 -0.0002 8 6 3.5531 -0.6777 0.0015 9 6 2.2634 -1.1006 0.0010 10 7 1.8334 -2.4281 0.0011 11 6 2.7362 -3.4289 0.0013 12 8 3.9253 -3.1750 0.0019 13 7 2.3209 -4.7111 0.0019 14 6 3.3022 -5.7989 0.0027 15 6 2.5837 -7.1235 0.0027 16 8 1.3712 -7.1558 0.0025 17 7 3.2883 -8.2724 0.0029 18 6 2.6348 -9.4775 0.0023 19 1 1.5551 -9.5062 0.0021 20 6 3.3613 -10.6619 0.0019 21 7 4.6749 -10.6270 0.0016 22 14 2.4706 -12.3039 0.0019 23 1 1.0039 -12.0716 0.0029 24 1 2.8497 -13.0727 -1.2108 25 1 2.8503 -13.0730 1.2142 26 1 -0.3633 -0.0004 -1.0277 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3633 0.8902 0.5134 29 1 5.3923 3.4778 0.0000 30 1 4.4297 -1.3085 0.0026 31 1 0.8848 -2.6307 0.0002 32 1 1.3722 -4.9137 0.0018 33 1 3.9272 -5.7249 -0.8872 34 1 3.9269 -5.7240 0.8928 35 1 4.2581 -8.2465 0.0026 36 1 5.1821 -11.4538 0.0017 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608143355.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:31:09 Heat of formation + Delta-G solvation = -59.828517 kcal Electronic energy + Delta-G solvation = -24358.330104 eV Core-core repulsion = 20266.360854 eV Total energy + Delta-G solvation = -4091.969250 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.111 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.90039 -40.26922 -39.76558 -38.33174 -36.29400 -35.21342 -34.67482 -33.86078 -33.51713 -31.46180 -29.67331 -27.83122 -27.51275 -24.73745 -24.38726 -22.20372 -21.00351 -20.44248 -19.67149 -18.89018 -18.38970 -18.01554 -17.69709 -16.49397 -16.29658 -15.89635 -15.79408 -15.47338 -15.35048 -14.86194 -14.61515 -14.23386 -14.21021 -13.79687 -13.62955 -13.59577 -13.13576 -12.86428 -12.31894 -12.21963 -11.80181 -11.69585 -11.27028 -11.26221 -11.17257 -11.06245 -10.46111 -10.38701 -10.18717 -9.71646 -9.43062 -9.11885 -8.73397 -8.33968 -8.17342 -6.57805 -4.00241 0.88972 1.54145 1.81171 2.29758 2.91804 2.93390 3.05500 3.15567 3.18836 3.24902 3.65609 3.89639 4.01565 4.09962 4.67789 4.72788 4.76235 4.97286 5.04321 5.10704 5.20556 5.58043 5.66353 5.75883 5.85919 5.95645 6.15204 6.25751 6.45022 6.50964 6.76286 7.11008 7.40176 7.68499 7.78818 7.84931 8.33877 8.38363 8.97755 9.31466 9.78428 10.58882 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.029964 B = 0.002283 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.245828 B =12259.454533 C =13173.253850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.375 5.375 3 N -0.229 5.229 4 C 0.052 3.948 5 C 0.572 3.428 6 O -0.493 6.493 7 O -0.503 6.503 8 C -0.221 4.221 9 C 0.332 3.668 10 N -0.661 5.661 11 C 0.712 3.288 12 O -0.559 6.559 13 N -0.711 5.711 14 C 0.127 3.873 15 C 0.426 3.574 16 O -0.600 6.600 17 N -0.546 5.546 18 C -0.306 4.306 19 H 0.106 0.894 20 C 0.026 3.974 21 N -0.892 5.892 22 Si 0.933 3.067 23 H -0.267 1.267 24 H -0.280 1.280 25 H -0.280 1.280 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.416 0.584 30 H 0.191 0.809 31 H 0.410 0.590 32 H 0.410 0.590 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.397 0.603 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.765 21.119 0.052 21.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.167 5.167 3 N -0.059 5.059 4 C -0.112 4.112 5 C 0.412 3.588 6 O -0.377 6.377 7 O -0.314 6.314 8 C -0.253 4.253 9 C 0.112 3.888 10 N -0.312 5.312 11 C 0.411 3.589 12 O -0.434 6.434 13 N -0.368 5.368 14 C -0.001 4.001 15 C 0.212 3.788 16 O -0.487 6.487 17 N -0.180 5.180 18 C -0.435 4.435 19 H 0.124 0.876 20 C -0.177 4.177 21 N -0.532 5.532 22 Si 0.760 3.240 23 H -0.191 1.191 24 H -0.206 1.206 25 H -0.206 1.206 26 H 0.100 0.900 27 H 0.106 0.894 28 H 0.117 0.883 29 H 0.274 0.726 30 H 0.208 0.792 31 H 0.246 0.754 32 H 0.248 0.752 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.231 0.769 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.222 21.626 0.052 22.504 hybrid contribution 0.105 -1.419 -0.006 1.423 sum -6.117 20.207 0.046 21.113 Atomic orbital electron populations 1.21991 0.73447 1.05111 1.04071 1.48759 1.06703 1.01883 1.59333 1.77867 1.00462 1.04798 1.22788 1.20671 0.90656 0.93013 1.06911 1.19262 0.86726 0.80461 0.72352 1.90963 1.25566 1.76038 1.45093 1.84636 1.42781 1.18439 1.85547 1.21577 0.96861 0.91976 1.14897 1.17532 0.89948 0.79848 1.01454 1.41863 1.10482 1.01460 1.77356 1.15493 0.84544 0.80369 0.78523 1.90903 1.14155 1.82246 1.56105 1.44689 1.11843 1.02596 1.77672 1.20917 0.90487 0.84939 1.03780 1.19662 0.88124 0.85054 0.85978 1.90493 1.13700 1.86782 1.57692 1.41791 1.09463 1.04552 1.62222 1.19770 0.93726 0.81667 1.48375 0.87578 1.25345 0.95552 1.00140 0.96659 1.69619 1.05187 1.29408 1.48969 0.85750 0.79571 0.80824 0.77891 1.19133 1.20561 1.20566 0.89980 0.89412 0.88271 0.72576 0.79215 0.75418 0.75216 0.89411 0.89403 0.76927 0.91526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.48 11.28 59.85 0.68 1.16 16 2 N -0.38 -3.86 4.04 -67.08 -0.27 -4.13 16 3 N -0.23 -2.86 12.61 33.32 0.42 -2.44 16 4 C 0.05 0.70 7.11 -82.95 -0.59 0.11 16 5 C 0.57 7.13 8.34 34.55 0.29 7.42 16 6 O -0.49 -7.34 17.69 -19.26 -0.34 -7.69 16 7 O -0.50 -4.50 13.43 -40.60 -0.55 -5.05 16 8 C -0.22 -3.21 9.41 -39.41 -0.37 -3.58 16 9 C 0.33 4.05 7.67 -152.59 -1.17 2.88 16 10 N -0.66 -7.12 5.42 -15.76 -0.09 -7.21 16 11 C 0.71 10.19 8.53 -86.91 -0.74 9.45 16 12 O -0.56 -9.77 13.46 5.29 0.07 -9.70 16 13 N -0.71 -10.34 5.53 -66.41 -0.37 -10.71 16 14 C 0.13 2.12 6.15 -5.19 -0.03 2.09 16 15 C 0.43 9.13 7.85 -10.99 -0.09 9.05 16 16 O -0.60 -14.35 15.24 5.55 0.08 -14.27 16 17 N -0.55 -12.91 5.29 -10.97 -0.06 -12.97 16 18 C -0.31 -8.02 9.68 -14.94 -0.14 -8.16 16 19 H 0.11 2.90 7.16 -52.48 -0.38 2.52 16 20 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 21 N -0.89 -23.22 13.05 55.50 0.72 -22.49 16 22 Si 0.93 19.96 29.55 -169.99 -5.02 14.94 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 24 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 25 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 26 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.09 0.25 7.50 -51.93 -0.39 -0.13 16 28 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.42 1.51 9.11 45.56 0.42 1.92 16 30 H 0.19 3.17 5.80 -52.49 -0.30 2.86 16 31 H 0.41 2.90 7.98 -40.82 -0.33 2.57 16 32 H 0.41 5.61 7.45 -40.82 -0.30 5.31 16 33 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.40 9.04 7.90 -40.82 -0.32 8.72 16 36 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 331.93 15.07 5.00 5.00 Total: -1.00 -34.94 331.93 -5.09 -40.03 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -2.43 Total: 15.70 kcal Atomic # 6 Polarization: 23.25 SS G_CDS: -2.27 Total: 20.99 kcal Atomic # 7 Polarization: -60.32 SS G_CDS: 0.36 Total: -59.95 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: -0.73 Total: -36.70 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.94 -5.09 -40.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608143355.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.797 kcal (2) G-P(sol) polarization free energy of solvation -34.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds