Wall clock time and date at job start Fri Apr 10 2020 14:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34937 * 120.51176 * 2 1 4 4 H 0.97003 * 119.36616 * 359.95709 * 3 2 1 5 5 C 1.34244 * 121.27738 * 179.97438 * 3 2 1 6 6 O 1.21924 * 118.84805 * 179.72252 * 5 3 2 7 7 N 1.33090 * 122.30498 * 359.97438 * 5 3 2 8 8 C 1.32705 * 120.82068 * 0.02562 * 7 5 3 9 9 S 1.76200 * 120.66607 * 180.02562 * 8 7 5 10 10 C 1.81000 * 99.99863 * 359.96798 * 9 8 7 11 11 C 1.50699 * 109.47141 * 180.02562 * 10 9 8 12 12 O 1.21295 * 120.00255 * 0.02562 * 11 10 9 13 13 N 1.34785 * 120.00083 * 180.02562 * 11 10 9 14 14 C 1.37098 * 119.99848 * 179.97438 * 13 11 10 15 15 H 1.08004 * 120.00535 * 0.02562 * 14 13 11 16 16 C 1.38948 * 119.99670 * 179.97438 * 14 13 11 17 17 N 1.31404 * 120.00128 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99882 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.46930 * 90.00161 * 18 16 14 20 20 H 1.48499 * 109.47218 * 209.99991 * 18 16 14 21 21 H 1.48498 * 109.47108 * 329.99996 * 18 16 14 22 22 C 1.38380 * 120.51850 * 179.97438 * 2 1 3 23 23 C 1.47087 * 121.02183 * 359.97438 * 22 2 1 24 24 O 1.21556 * 119.99930 * 0.02562 * 23 22 2 25 25 O 1.34788 * 120.00245 * 179.97438 * 23 22 2 26 26 H 1.08997 * 109.47273 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47003 * 119.99966 * 1 2 3 28 28 H 1.09004 * 109.47124 * 239.99887 * 1 2 3 29 29 H 1.08992 * 109.47285 * 300.00102 * 10 9 8 30 30 H 1.09001 * 109.47056 * 60.00151 * 10 9 8 31 31 H 0.96996 * 119.99652 * 0.02562 * 13 11 10 32 32 H 0.97009 * 119.99953 * 179.97438 * 17 16 14 33 33 H 0.96700 * 117.00003 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1921 1.1625 0.0000 4 1 1.7053 2.0015 -0.0006 5 6 3.5344 1.1805 0.0005 6 8 4.1084 2.2561 -0.0047 7 7 4.2607 0.0652 0.0015 8 6 3.6767 -1.1265 0.0016 9 16 4.6421 -2.6004 0.0037 10 6 6.3054 -1.8866 0.0042 11 6 7.3274 -2.9942 0.0053 12 8 6.9667 -4.1522 0.0052 13 7 8.6423 -2.6979 0.0063 14 6 9.5719 -3.7055 0.0079 15 1 9.2508 -4.7367 0.0078 16 6 10.9274 -3.4001 0.0084 17 7 11.3182 -2.1455 0.0080 18 14 12.1942 -4.7730 0.0098 19 1 12.5306 -5.1375 -1.3900 20 1 13.4206 -4.3142 0.7102 21 1 11.6384 -5.9586 0.7102 22 6 2.2097 -1.1921 0.0005 23 6 1.5088 -2.4852 0.0017 24 8 0.2937 -2.5179 0.0017 25 8 2.2138 -3.6340 0.0017 26 1 -0.3633 1.0276 0.0005 27 1 -0.3633 -0.5138 -0.8900 28 1 -0.3633 -0.5139 0.8900 29 1 6.4373 -1.2720 -0.8862 30 1 6.4360 -1.2703 0.8937 31 1 8.9307 -1.7718 0.0068 32 1 12.2646 -1.9323 0.0087 33 1 1.7091 -4.4588 0.0020 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037404714.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:33:19 Heat of formation + Delta-G solvation = -114.036655 kcal Electronic energy + Delta-G solvation = -22781.304601 eV Core-core repulsion = 18934.300256 eV Total energy + Delta-G solvation = -3847.004345 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.061 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -41.88347 -40.13260 -38.20060 -37.40872 -36.28614 -35.37144 -34.07798 -32.27146 -31.41952 -29.52906 -29.08790 -25.42480 -24.57747 -24.21559 -22.25326 -19.69558 -19.37395 -18.78659 -18.17813 -17.65694 -17.30947 -16.73679 -16.63428 -15.95548 -15.60521 -15.08762 -14.60903 -14.55945 -14.29413 -13.98181 -13.89727 -13.65693 -13.40266 -12.99593 -12.45915 -12.45578 -11.95350 -11.78117 -11.61704 -11.58712 -11.34669 -11.09912 -10.83936 -10.44211 -10.38951 -10.23456 -9.77992 -9.61426 -9.03180 -8.65558 -8.10494 -7.87018 -6.49491 -3.91632 0.16473 0.60878 1.28403 2.10656 2.19303 2.40990 3.03036 3.13405 3.23976 3.29571 3.44110 3.58071 3.73308 4.11605 4.15540 4.40441 4.47990 4.83734 4.95040 5.02480 5.16012 5.19612 5.36847 5.65752 5.74366 5.86431 6.00458 6.13564 6.29137 7.45478 7.47978 7.68560 7.85180 7.92638 8.45474 9.05561 9.39962 9.88024 10.67296 Molecular weight = 313.06amu Principal moments of inertia in cm(-1) A = 0.022644 B = 0.003273 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.216009 B = 8553.448035 C = 9769.216545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.295 3.705 3 N -0.623 5.623 4 H 0.422 0.578 5 C 0.644 3.356 6 O -0.523 6.523 7 N -0.560 5.560 8 C 0.237 3.763 9 S 0.170 5.830 10 C -0.164 4.164 11 C 0.449 3.551 12 O -0.587 6.587 13 N -0.545 5.545 14 C -0.305 4.305 15 H 0.107 0.893 16 C 0.026 3.974 17 N -0.894 5.894 18 Si 0.933 3.067 19 H -0.277 1.277 20 H -0.283 1.283 21 H -0.268 1.268 22 C -0.286 4.286 23 C 0.552 3.448 24 O -0.524 6.524 25 O -0.491 6.491 26 H 0.078 0.922 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.397 0.603 32 H 0.274 0.726 33 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.476 3.665 0.006 22.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.172 3.828 3 N -0.261 5.261 4 H 0.262 0.738 5 C 0.342 3.658 6 O -0.397 6.397 7 N -0.304 5.304 8 C -0.035 4.035 9 S 0.410 5.590 10 C -0.316 4.316 11 C 0.233 3.767 12 O -0.474 6.474 13 N -0.180 5.180 14 C -0.434 4.434 15 H 0.125 0.875 16 C -0.177 4.177 17 N -0.534 5.534 18 Si 0.760 3.240 19 H -0.202 1.202 20 H -0.208 1.208 21 H -0.192 1.192 22 C -0.301 4.301 23 C 0.397 3.603 24 O -0.416 6.416 25 O -0.303 6.303 26 H 0.097 0.903 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.230 0.770 32 H 0.084 0.916 33 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -21.432 3.072 0.010 21.651 hybrid contribution -0.005 1.297 -0.010 1.297 sum -21.437 4.369 0.000 21.878 Atomic orbital electron populations 1.21402 0.85448 1.04186 1.07190 1.21226 0.95689 0.84717 0.81195 1.44395 1.10487 1.09133 1.62042 0.73828 1.18087 0.78712 0.90208 0.78777 1.91046 1.68182 1.28209 1.52278 1.70500 1.33333 0.96214 1.30344 1.26699 0.93466 0.99760 0.83538 1.87009 0.95359 0.95299 1.81307 1.24057 0.95957 1.03193 1.08381 1.18936 0.83305 0.88363 0.86092 1.90554 1.79554 1.20118 1.57134 1.41769 1.03550 1.10204 1.62467 1.19758 0.85560 0.89810 1.48302 0.87535 1.25336 0.98164 0.97441 0.96760 1.69623 1.17409 1.17176 1.49156 0.85809 0.79302 0.80393 0.78502 1.20248 1.20820 1.19239 1.19596 0.91658 0.90984 1.27815 1.19599 0.84619 0.83917 0.72191 1.90888 1.14382 1.88081 1.48271 1.84636 1.43696 1.16728 1.85216 0.90307 0.86862 0.86863 0.86844 0.86841 0.76959 0.91567 0.72236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.59 8.51 36.01 0.31 -0.28 16 2 C 0.30 2.47 6.91 -81.17 -0.56 1.91 16 3 N -0.62 -5.90 5.18 -12.69 -0.07 -5.97 16 4 H 0.42 2.58 8.60 -40.82 -0.35 2.22 16 5 C 0.64 9.68 8.53 -88.89 -0.76 8.92 16 6 O -0.52 -9.65 18.00 4.99 0.09 -9.56 16 7 N -0.56 -9.01 9.34 -13.88 -0.13 -9.14 16 8 C 0.24 3.32 7.23 -13.70 -0.10 3.22 16 9 S 0.17 2.63 18.32 -107.50 -1.97 0.66 16 10 C -0.16 -2.99 5.36 36.01 0.19 -2.80 16 11 C 0.45 10.39 7.80 -10.98 -0.09 10.30 16 12 O -0.59 -15.15 15.44 5.54 0.09 -15.06 16 13 N -0.55 -13.70 5.29 -10.96 -0.06 -13.76 16 14 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 15 H 0.11 3.01 7.16 -52.48 -0.38 2.64 16 16 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 17 N -0.89 -24.13 13.05 55.50 0.72 -23.40 16 18 Si 0.93 20.62 29.55 -169.99 -5.02 15.60 16 19 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 22 C -0.29 -3.13 6.05 -102.78 -0.62 -3.75 16 23 C 0.55 5.50 8.24 34.32 0.28 5.78 16 24 O -0.52 -5.35 14.38 -19.31 -0.28 -5.63 16 25 O -0.49 -4.42 10.33 -40.73 -0.42 -4.84 16 26 H 0.08 0.15 7.93 -51.93 -0.41 -0.27 16 27 H 0.11 0.56 7.41 -51.93 -0.38 0.17 16 28 H 0.11 0.56 7.40 -51.93 -0.38 0.18 16 29 H 0.11 1.98 8.14 -51.92 -0.42 1.56 16 30 H 0.11 1.98 8.14 -51.92 -0.42 1.56 16 31 H 0.40 9.67 7.90 -40.82 -0.32 9.35 16 32 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.42 1.76 9.11 45.56 0.42 2.17 16 LS Contribution 314.11 15.07 4.73 4.73 Total: -1.00 -35.86 314.11 -5.69 -41.55 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -1.79 Total: 9.39 kcal Atomic # 6 Polarization: 17.01 SS G_CDS: -1.58 Total: 15.42 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: 0.47 Total: -52.27 kcal Atomic # 8 Polarization: -34.56 SS G_CDS: -0.52 Total: -35.08 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -1.97 Total: 0.66 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -35.86 -5.69 -41.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037404714.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.487 kcal (2) G-P(sol) polarization free energy of solvation -35.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds