Wall clock time and date at job start Fri Apr 10 2020 14:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86805 * 119.99737 * 2 1 4 4 H 1.48497 * 109.47108 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47015 * 300.00209 * 3 2 1 6 6 H 1.48500 * 109.46858 * 59.99879 * 3 2 1 7 7 C 1.38949 * 120.00524 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00202 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99723 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99580 * 179.97438 * 9 7 2 11 11 O 1.21285 * 120.00355 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99566 * 180.02562 * 10 9 7 13 13 O 1.45202 * 109.46859 * 180.02562 * 12 10 9 14 14 C 1.34230 * 116.99836 * 180.02562 * 13 12 10 15 15 O 1.20833 * 119.99930 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00262 * 180.27336 * 14 13 12 17 17 C 1.50693 * 109.47486 * 179.72204 * 16 14 13 18 18 C 1.38283 * 119.94004 * 269.72633 * 17 16 14 19 19 C 1.38152 * 120.07792 * 179.72396 * 18 17 16 20 20 C 1.38712 * 119.95539 * 0.54884 * 19 18 17 21 21 O 1.35922 * 120.05692 * 179.70611 * 20 19 18 22 22 C 1.38812 * 119.87878 * 359.72432 * 20 19 18 23 23 Cl 1.73597 * 120.03596 * 179.97438 * 22 20 19 24 24 C 1.38249 * 119.94505 * 89.99869 * 17 16 14 25 25 H 0.96995 * 120.00385 * 359.97438 * 1 2 3 26 26 H 0.97001 * 119.99596 * 0.02562 * 9 7 2 27 27 H 1.08998 * 109.47259 * 60.00127 * 12 10 9 28 28 H 1.09004 * 109.46840 * 299.99907 * 12 10 9 29 29 H 1.09004 * 109.46801 * 299.72165 * 16 14 13 30 30 H 1.09000 * 109.47461 * 59.71633 * 16 14 13 31 31 H 1.08003 * 119.95730 * 359.97438 * 18 17 16 32 32 H 1.08002 * 120.02242 * 180.27071 * 19 18 17 33 33 H 0.96709 * 113.99716 * 270.01531 * 21 20 19 34 34 H 1.07998 * 119.97383 * 359.97438 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8892 2.3965 -1.2124 6 1 1.8892 2.3965 1.2125 7 6 2.0090 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3235 -2.3906 0.0005 10 6 1.9975 -3.5577 0.0005 11 8 3.2104 -3.5577 0.0010 12 6 1.2441 -4.8629 0.0000 13 8 2.1877 -5.9665 0.0007 14 6 1.6748 -7.2069 -0.0002 15 8 0.4769 -7.3652 -0.0012 16 6 2.5927 -8.4019 0.0067 17 6 1.7721 -9.6658 0.0110 18 6 1.3990 -10.2424 1.2112 19 6 0.6418 -11.3979 1.2185 20 6 0.2651 -11.9866 0.0203 21 8 -0.4748 -13.1268 0.0251 22 6 0.6453 -11.4095 -1.1835 23 17 0.1766 -12.1432 -2.6853 24 6 1.3982 -10.2500 -1.1850 25 1 -0.4850 0.8400 0.0004 26 1 0.3535 -2.3906 -0.0002 27 1 0.6178 -4.9205 -0.8903 28 1 0.6171 -4.9208 0.8897 29 1 3.2230 -8.3810 -0.8824 30 1 3.2202 -8.3731 0.8975 31 1 1.6965 -9.7865 2.1440 32 1 0.3473 -11.8450 2.1564 33 1 0.0522 -13.9377 0.0300 34 1 1.6942 -9.7999 -2.1211 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869736362.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:32:14 Heat of formation + Delta-G solvation = -170.917866 kcal Electronic energy + Delta-G solvation = -22044.572539 eV Core-core repulsion = 18160.765183 eV Total energy + Delta-G solvation = -3883.807357 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.060 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.77744 -40.78509 -40.00203 -38.13897 -37.53217 -37.28473 -36.03061 -33.45092 -33.27230 -31.87839 -30.24545 -28.24739 -26.49711 -24.00489 -23.47675 -21.76571 -21.41484 -20.07458 -19.54614 -18.86065 -18.02928 -17.90937 -17.26869 -17.10454 -16.89922 -16.45369 -16.33943 -15.76574 -15.72724 -15.05743 -14.84714 -14.65511 -14.15517 -13.91376 -13.57988 -13.49551 -13.45728 -13.12301 -12.94373 -12.67961 -12.46655 -12.42867 -12.10824 -12.10465 -11.84866 -11.65323 -11.58341 -11.55112 -10.51286 -10.12087 -9.93691 -9.58669 -8.52702 -6.03360 -0.06191 0.13291 1.07071 1.13991 1.34826 1.40272 1.48488 1.60237 1.86913 2.28891 2.48102 3.08026 3.11460 3.12987 3.47229 3.74626 3.78923 4.09783 4.11816 4.16232 4.18393 4.22411 4.35779 4.56417 4.64525 4.82194 4.98660 5.15858 5.34716 5.36963 5.38622 5.64486 5.89160 6.45602 6.67107 6.71567 7.02856 7.39905 7.93010 8.64594 Molecular weight = 313.06amu Principal moments of inertia in cm(-1) A = 0.033606 B = 0.002153 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.982359 B =12999.983202 C =13174.407237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.010 4.010 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.336 4.336 8 H 0.085 0.915 9 N -0.560 5.560 10 C 0.437 3.563 11 O -0.617 6.617 12 C 0.072 3.928 13 O -0.343 6.343 14 C 0.458 3.542 15 O -0.531 6.531 16 C -0.065 4.065 17 C -0.081 4.081 18 C -0.082 4.082 19 C -0.134 4.134 20 C 0.115 3.885 21 O -0.497 6.497 22 C -0.080 4.080 23 Cl -0.064 7.064 24 C -0.089 4.089 25 H 0.281 0.719 26 H 0.399 0.601 27 H 0.103 0.897 28 H 0.105 0.895 29 H 0.141 0.859 30 H 0.150 0.850 31 H 0.156 0.844 32 H 0.161 0.839 33 H 0.412 0.588 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.449 -25.363 1.011 25.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.211 4.211 3 Si 0.821 3.179 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.465 4.465 8 H 0.103 0.897 9 N -0.197 5.197 10 C 0.224 3.776 11 O -0.503 6.503 12 C -0.005 4.005 13 O -0.258 6.258 14 C 0.303 3.697 15 O -0.421 6.421 16 C -0.101 4.101 17 C -0.082 4.082 18 C -0.100 4.100 19 C -0.153 4.153 20 C 0.069 3.931 21 O -0.311 6.311 22 C -0.108 4.108 23 Cl -0.035 7.035 24 C -0.107 4.107 25 H 0.090 0.910 26 H 0.234 0.766 27 H 0.121 0.879 28 H 0.123 0.877 29 H 0.159 0.841 30 H 0.167 0.833 31 H 0.173 0.827 32 H 0.179 0.821 33 H 0.271 0.729 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.226 -24.924 0.868 24.970 hybrid contribution -0.292 0.550 -0.350 0.715 sum 0.933 -24.374 0.518 24.397 Atomic orbital electron populations 1.69677 1.06992 1.29666 1.49338 1.26143 0.96580 1.02656 0.95710 0.84791 0.78114 0.76551 0.78405 1.19447 1.19527 1.19475 1.19760 0.92947 0.83347 1.50474 0.89683 1.41774 1.09565 1.04280 1.64086 1.20126 0.88088 0.85395 0.84009 1.90522 1.15397 1.87710 1.56714 1.22474 0.90214 0.82676 1.05161 1.86553 1.40626 1.15048 1.83568 1.24444 0.89106 0.84531 0.71649 1.90689 1.18140 1.86786 1.46436 1.20423 0.95884 0.83888 1.09949 1.19348 0.99972 0.95676 0.93183 1.21357 0.95617 0.94549 0.98485 1.21606 0.98393 0.97276 0.97989 1.18366 0.93655 0.90319 0.90774 1.84813 1.35064 1.15001 1.96198 1.21486 1.03416 0.98467 0.87385 1.98366 1.91192 1.82369 1.31556 1.21020 0.96642 0.93594 0.99468 0.90989 0.76620 0.87916 0.87696 0.84088 0.83270 0.82666 0.82148 0.72872 0.83934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.61 13.05 21.66 0.28 -48.33 16 2 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 3 Si 1.00 41.78 29.55 68.60 2.03 43.81 16 4 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 7 C -0.34 -18.74 9.68 84.04 0.81 -17.93 16 8 H 0.09 5.03 7.16 -2.91 -0.02 5.01 16 9 N -0.56 -28.51 5.29 -306.99 -1.62 -30.13 16 10 C 0.44 21.03 7.86 87.66 0.69 21.72 16 11 O -0.62 -34.45 16.08 15.75 0.25 -34.20 16 12 C 0.07 2.65 5.94 71.24 0.42 3.07 16 13 O -0.34 -11.76 9.75 -45.06 -0.44 -12.20 16 14 C 0.46 12.58 7.95 71.23 0.57 13.15 16 15 O -0.53 -17.27 15.78 21.94 0.35 -16.93 16 16 C -0.06 -1.08 5.94 29.10 0.17 -0.91 16 17 C -0.08 -1.43 4.38 -19.85 -0.09 -1.52 16 18 C -0.08 -1.25 9.69 22.26 0.22 -1.04 16 19 C -0.13 -1.99 9.99 22.36 0.22 -1.77 16 20 C 0.11 2.00 6.70 22.52 0.15 2.15 16 21 O -0.50 -7.47 12.96 -92.67 -1.20 -8.67 16 22 C -0.08 -1.57 6.33 22.41 0.14 -1.43 16 23 Cl -0.06 -1.23 28.50 -2.72 -0.08 -1.31 16 24 C -0.09 -1.68 9.48 22.28 0.21 -1.47 16 25 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 26 H 0.40 19.25 7.90 -92.71 -0.73 18.52 16 27 H 0.10 3.44 8.13 -2.39 -0.02 3.42 16 28 H 0.11 3.47 8.13 -2.38 -0.02 3.45 16 29 H 0.14 1.79 8.08 -2.38 -0.02 1.77 16 30 H 0.15 1.68 8.08 -2.39 -0.02 1.66 16 31 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 32 H 0.16 1.62 8.06 -2.91 -0.02 1.59 16 33 H 0.41 2.16 9.06 -74.05 -0.67 1.49 16 34 H 0.14 2.44 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -74.17 330.77 3.33 -70.83 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: -0.22 Total: 23.18 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: 3.99 Total: 13.95 kcal Atomic # 7 Polarization: -77.12 SS G_CDS: -1.34 Total: -78.46 kcal Atomic # 8 Polarization: -70.95 SS G_CDS: -1.04 Total: -72.00 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.08 Total: -1.31 kcal Total: -74.17 3.33 -70.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869736362.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.086 kcal (2) G-P(sol) polarization free energy of solvation -74.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds